Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001580

Physical Location & Seq

Genomic Coordinates Reverse (-)

16297928 .. 16302647

Gene Structure 4720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG087500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2235 bp

ATGCTACTGACTATACCAAAATTAAATAGAAAAAGGGATAAAAATGCAATCCAAGGATATTTACGAGCTGAGTCGAAATTCGAATGTTCTCTCGAGGCACAGCCGGTCGCGGTTGAACTCTTTATGAGTCTTTCTTGTCACTCCCGGTCCTTGTTCTCCACTCTCCAACACCACACTCGTCTAAAGGACCTCCAAAGAGGCAAACCCCTCCACGCTCACATCATCACAACCGGTTCCTCCTCTTGCGTCTACATTGCCAATGCCCTCATCAACCTCTACGTCAAATCCGGACACTTACACACAGCCCACCTCGTATTCGAAACCATACCTCACAAAGACGTGGTCTCATGGAACACCCTCATCAATGGCTACTCTCAACAGGGCTTCAGATACTCCTCGTTTGTGTTGGACCTTTTTCGACGCATGCGGGGTGAGAACGCCTCCCCGGATTCGCACACTTTTGCTGGAGTTTGTAATGCTGCTTCATATGTAAAGGATGTTTTGGGTGGCCGGCAAGTTCACACGGTTGCTGTTAAGGCTGTGGGCTGTTTTGATGTGTTTGTTGGAAGCTCTCTTGTTAATATGTATTGTAAGATGGGTCTTGTGGGGGATGCACGTAAGGTGTTCGATGAAATGCTTGTGAGGAATTCGGTTACTTGGGCTACTGTGATTTCTGGGTATGCAATGCAACAGTTGGGTGCAAATGCGTTCGAGGTTTTTATGCTGCTGCGTAGGAGTGAGGAGAGGGAAGAAGAGAATGAGTTTGTTTTGACCGCGGTTCTTAGTGGTTTGGGGGTTCCTGAATTTGTTGATACAGGCAAGCAGATTCATTGTCTTGCGGTGAAAAATGGGCTGATGTGTAATGTTTCTGTTGGGAATGCGCTTGTCACGATGTATGCGAAATGTGGGAGTTTAGATGATGCGCTTAGAACTTTTGAGCTGTCTGGCGATAAGAATTCCATCACATGGTCTGCGATGATATCTGGTTTTGCGCAGAGTGGGGATTCGGAAAAGGCTTTGGACTTGTTTTCAGACATGCATTTTTCTGGGATAGTGCCGACTGAGTTTGCGTTTGGTGGGGTCATTAGTGCCTGTAGTGACATTAATGCTCTTGAACAAGGAAAGCAAGTGCATAGTTATGTGCTCAAGTTGGGATTTGAATTCCAATTATATATAATTTCAGCTTTGGTTGACATGTATGGCAAATGTGGTAGCGTTAGTGATGCTCGGAAAGGGTTTGATTGTATAAAAGAGCCTGATATTGTTCTTTGGAGTTCTATGATCGGAGGGTATGTACAAAATGCCGAGAATGAAGCTGCTTTGAGTTTATACTGTAGAATGCAGAGGGAGGGATTTTTGCCCAATGAACTCACTATGGCCAGTCTCCTGAAAGCATGTTCAAGCCTATGTGCTTTTGAACAAGGAAAGCAAATCCATGTGCATACCATTAAGTATGGATTCAGTCTTGAATTTCCAATTGGAAGTGCTCTTTTCACTATGTATGCAAAGTGTGGGAATTTGGAAGATGGGAAGTTAGTGTTTAGGAGAATGCCTACGAGAGATGTAGTGTCTTGGAATGCAATGATATCTGGGCTTTCACAAAATGGGCAGGGTAACGAAGCTCTAGAGCTCTTTGAGGAGATGCGATTGGGTGGCACAGAGCCGGATTACGTTACATTTGTGAATGTTCTCTCTGCTTGCAGCCATATGGGATCTGTGGAGAGAGGATGGATTTATTTCAAGATGATGTCTAATGAATTTGGCATTGCCCCAAGGGTGGAGCATTATGCTTGCATGGTTGATGTCCTGAGCCGAGCTGGGAAGTTAGATGAAGCCAAAGATTTCATAGAGTCAGCAACTATTGATCATGGCATCTGTTTATGGCGTATTTTATTAAGTGCTTGTCGAAACTATCGGAATTATGAATTGGGAGCATATGCCGGAGAGAAGTTAATGGAGTTAGGTTCACTAGAATCACAGTCTTACGTGCTATTGTCAAGCATCTATACTTCCCTGGGTAGGCGGGAAGATGTTGAGCGGGTAAGGAGGATGATGAAACTTCGAGGGGTGAGTAAGAAGCCTGGCTGTAGCTGGATTGAGTTGAAGAGTCAGGTTCATGTGTTTGTTGTTGGTGATTTGATGCATCCACAGATCGATAGTATAGGTGTTGAGATCCGAAGGTTAATCAAGCATATGAAGGATGAAGGATACCAACCTTCCTCTATCACTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

744

Amino Acids

82.77

Weight (kDa)

6.63

Isoelectric Point (pI)

41.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	112 - 155	4.7e-06	PPR repeat family
PPR_2	PF13041	318 - 366	1.4e-09	PPR repeat family
PPR	PF01535	321 - 351	9.6e-08	PPR repeat
PPR_2	PF13041	419 - 467	1.7e-10	PPR repeat family
PPR_2	PF13041	520 - 568	3.3e-13	PPR repeat family
PPR_1	PF12854	521 - 549	1.6e-06	PPR repeat
PPR	PF01535	523 - 549	4.7e-09	PPR repeat
E_motif	PF20431	638 - 700	1.1e-19	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680
fragaria_vesca	FvH4_7g03841 FvH4_7g03850
malus_domestica	MD02G1276700.v1.1
prunus_persica	Prupe.2G043400_v2.0.a1
pyrus_communis	pycom02g23700
rosa_chinensis	RchiOBHm_Chr1g0326811 RchiOBHm_Chr1g0326821 RchiOBHm_Chr1g0327271 RchiOBHm_Chr1g0327321
rosa_laevigata	RLG00000030002 RLG00000030005 RLG00000030054
rosa_multiflora	Rmu_sc0001021.1_g000002 Rmu_sc0003600.1_g000043 Rmu_sc0005038.1_g000015 Rmu_sc0010151.1_g000003 Rmu_sc0010151.1_g000004 Rmu_sc0020365.1_g000001
rosa_roxburghii	Rroxscaffold_2G00128000 Rroxscaffold_4G00322770 Rroxscaffold_4G00322870
rosa_rugosa	Rorug01G0064900 Rorug01G0065300 Rorug01G0065400 Rorug01G0065500 Rorug01G0065500
rosa_samantha	Rh1AG082500 Rh1AG083100 Rh1BG065600 Rh1BG065900 Rh1BG066000 Rh1CG080500 Rh1DG087500 Rh2AG148500 Rh2AG148600 Rh2BG154000 Rh2DG154200 Rh3CG329400
rosa_wichuraiana	Rw1G006500 Rw1G006530 Rw2G011590 Rw2G011600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	993
AccB7I	CCANNNNNTGG	1 cut(s)	966
AccBSI	CCGCTC	1 cut(s)	2038
AccI	GTMKAC	1 cut(s)	249
AccII	CGCG	2 cut(s)	110, 776
AccIII	TCCGGA	1 cut(s)	287
AciI	CCGC	7 cut(s)	110, 427, 774, 776, 839, 2023, 2038
AclWI	GGATC	2 cut(s)	1720, 2167
AcoI	YGGCCR	2 cut(s)	508, 1377
AcsI	RAATTY	8 cut(s)	77, 646, 803, 955, 1160, 1469, 1516, 1757
AcuI	CTGAAG	1 cut(s)	370
AfaI	GTAC	1 cut(s)	1296
AfiI	CCNNNNNNNGG	3 cut(s)	966, 1777, 2019
AflIII	ACRYGT	1 cut(s)	1194
AgeI	ACCGGT	1 cut(s)	230
AgsI	TTSAA	8 cut(s)	116, 1115, 1160, 1401, 1418, 1469, 1741, 2104
AjiI	CACGTC	1 cut(s)	340
AjnI	CCWGG	2 cut(s)	2013, 2080
AjuI	GAANNNNNNNTTGG	4 cut(s)	1461, 1493, 1910, 1942
AluBI	AGCT	9 cut(s)	68, 570, 940, 1184, 1316, 1622, 1630, 1817, 2091
AluI	AGCT	9 cut(s)	68, 570, 940, 1184, 1316, 1622, 1630, 1817, 2091
Alw21I	GWGCWC	3 cut(s)	1146, 1489, 1632
Alw26I	GTCTC	2 cut(s)	349, 1388
AlwI	GGATC	2 cut(s)	1720, 2167
Ama87I	CYCGRG	1 cut(s)	92
Aor13HI	TCCGGA	1 cut(s)	287
AoxI	GGCC	2 cut(s)	508, 1377
ApeKI	GCWGC	5 cut(s)	479, 724, 727, 1316, 1701
ApoI	RAATTY	8 cut(s)	77, 646, 803, 955, 1160, 1469, 1516, 1757
ArsI	GACNNNNNNTTYG	2 cut(s)	327, 359
AseI	ATTAAT	1 cut(s)	1104
AsiGI	ACCGGT	1 cut(s)	230
AspLEI	GCGC	3 cut(s)	883, 925, 994
AspS9I	GGNCC	3 cut(s)	147, 187, 409
AsuC2I	CCSGG	2 cut(s)	145, 446
AsuHPI	GGTGA	4 cut(s)	443, 853, 2080, 2144
AsuII	TTCGAA	2 cut(s)	81, 318
AvaI	CYCGRG	1 cut(s)	92
AvaII	GGWCC	3 cut(s)	147, 187, 409
BalI	TGGCCA	1 cut(s)	1379
BanII	GRGCYC	1 cut(s)	1632
BarI	GAAGNNNNNNTAC	2 cut(s)	466, 498
Bbv12I	GWGCWC	3 cut(s)	1146, 1489, 1632
BbvI	GCAGC	5 cut(s)	466, 711, 714, 1303, 1713
BccI	CCATC	4 cut(s)	589, 968, 1520, 1722
BciT130I	CCWGG	2 cut(s)	2015, 2082
BciVI	GTATCC	1 cut(s)	2201
BclI	TGATCA	1 cut(s)	1864
BcnI	CCSGG	2 cut(s)	145, 446
BcoDI	GTCTC	2 cut(s)	349, 1388
BfaI	CTAG	2 cut(s)	1625, 1970
BfmI	CTRYAG	3 cut(s)	1093, 1333, 2086
BfuI	GTATCC	1 cut(s)	2201
BisI	GCNGC	5 cut(s)	480, 725, 728, 1317, 1702
BlsI	GCNGC	5 cut(s)	481, 726, 729, 1318, 1703
Bme1390I	CCNGG	4 cut(s)	145, 446, 2015, 2082
Bme18I	GGWCC	3 cut(s)	147, 187, 409
BmeT110I	CYCGRG	1 cut(s)	92
BmgBI	CACGTC	1 cut(s)	340
BmgT120I	GGNCC	3 cut(s)	147, 187, 409
BmiI	GGNNCC	2 cut(s)	235, 798
BmrFI	CCNGG	4 cut(s)	145, 446, 2015, 2082
BmsI	GCATC	8 cut(s)	601, 910, 1213, 1632, 1881, 2010, 2130, 2152
BplI	GAGNNNNNCTC	2 cut(s)	425, 457
BpmI	CTGGAG	1 cut(s)	486
Bpu10I	CCTNAGC	1 cut(s)	1808
Bpu14I	TTCGAA	2 cut(s)	81, 318
BpuEI	CTTGAG	1 cut(s)	1130
BpuMI	CCSGG	2 cut(s)	145, 446
Bsa29I	ATCGAT	1 cut(s)	2154
BsaAI	YACGTR	2 cut(s)	617, 1987
BsaI	GGTCTC	1 cut(s)	349
BsaJI	CCNNGG	6 cut(s)	52, 444, 774, 1772, 2013, 2014
BsaWI	WCCGGW	2 cut(s)	230, 287
BsaXI	ACNNNNNCTCC	2 cut(s)	1278, 1308
Bsc4I	CCNNNNNNNGG	3 cut(s)	966, 1777, 2019
Bse118I	RCCGGY	3 cut(s)	103, 230, 510
Bse1I	ACTGG	1 cut(s)	1380
Bse3DI	GCAATG	4 cut(s)	252, 690, 1587, 1764
BseAI	TCCGGA	1 cut(s)	287
BseBI	CCWGG	2 cut(s)	2015, 2082
BseCI	ATCGAT	1 cut(s)	2154
BseDI	CCNNGG	6 cut(s)	52, 444, 774, 1772, 2013, 2014
BseGI	GGATG	6 cut(s)	502, 616, 1733, 2055, 2143, 2206
BseLI	CCNNNNNNNGG	3 cut(s)	966, 1777, 2019
BseMI	GCAATG	4 cut(s)	252, 690, 1587, 1764
BseMII	CTCAG	3 cut(s)	60, 1053, 1799
BseNI	ACTGG	1 cut(s)	1380
BseRI	GAGGAG	4 cut(s)	229, 385, 755, 1652
BseXI	GCAGC	5 cut(s)	466, 711, 714, 1303, 1713
BseYI	CCCAGC	1 cut(s)	1817
Bsh1236I	CGCG	2 cut(s)	110, 776
Bsh1285I	CGRYCG	1 cut(s)	108
BshFI	GGCC	2 cut(s)	510, 1379
BshTI	ACCGGT	1 cut(s)	230
BshVI	ATCGAT	1 cut(s)	2154
BsiEI	CGRYCG	1 cut(s)	108
BsiHKAI	GWGCWC	3 cut(s)	1146, 1489, 1632
BsiHKCI	CYCGRG	1 cut(s)	92
BsiSI	CCGG	8 cut(s)	104, 145, 231, 288, 446, 511, 1664, 1941
BslI	CCNNNNNNNGG	3 cut(s)	966, 1777, 2019
BsmAI	GTCTC	2 cut(s)	349, 1388
BsmI	GAATGC	4 cut(s)	883, 1344, 1554, 1582
BsnI	GGCC	2 cut(s)	510, 1379
Bso31I	GGTCTC	1 cut(s)	349
BsoBI	CYCGRG	1 cut(s)	92
Bsp119I	TTCGAA	2 cut(s)	81, 318
Bsp1286I	GDGCHC	3 cut(s)	1146, 1489, 1632
Bsp13I	TCCGGA	1 cut(s)	287
Bsp1407I	TGTACA	1 cut(s)	1294
Bsp143I	GATC	5 cut(s)	1281, 1712, 1864, 2151, 2172
BspACI	CCGC	7 cut(s)	110, 427, 774, 776, 839, 2023, 2038
BspANI	GGCC	2 cut(s)	510, 1379
BspCNI	CTCAG	3 cut(s)	61, 1054, 1800
BspDI	ATCGAT	1 cut(s)	2154
BspEI	TCCGGA	1 cut(s)	287
BspFNI	CGCG	2 cut(s)	110, 776
BspLI	GGNNCC	2 cut(s)	235, 798
BspPI	GGATC	2 cut(s)	1720, 2167
BspT104I	TTCGAA	2 cut(s)	81, 318
BspTNI	GGTCTC	1 cut(s)	349
BsrBI	CCGCTC	1 cut(s)	2038
BsrDI	GCAATG	4 cut(s)	252, 690, 1587, 1764
BsrFI	RCCGGY	3 cut(s)	103, 230, 510
BsrGI	TGTACA	1 cut(s)	1294
BsrI	ACTGG	1 cut(s)	1380
BssAI	RCCGGY	3 cut(s)	103, 230, 510
BssECI	CCNNGG	6 cut(s)	52, 444, 774, 1772, 2013, 2014
BssMI	GATC	5 cut(s)	1281, 1712, 1864, 2151, 2172
BssT1I	CCWWGG	2 cut(s)	52, 1772
Bst2UI	CCWGG	2 cut(s)	2015, 2082
Bst4CI	ACNGT	5 cut(s)	526, 667, 693, 1334, 1980
Bst6I	CTCTTC	2 cut(s)	747, 2099
BstAUI	TGTACA	1 cut(s)	1294
BstBAI	YACGTR	2 cut(s)	617, 1987
BstBI	TTCGAA	2 cut(s)	81, 318
BstC8I	GCNNGC	5 cut(s)	425, 512, 821, 1699, 1792
BstDEI	CTNAG	5 cut(s)	69, 782, 926, 1062, 1808
BstDSI	CCRYGG	1 cut(s)	774
BstF5I	GGATG	6 cut(s)	502, 616, 1733, 2055, 2143, 2206
BstFNI	CGCG	2 cut(s)	110, 776
BstHHI	GCGC	3 cut(s)	883, 925, 994
BstKTI	GATC	5 cut(s)	1284, 1715, 1867, 2154, 2175
BstMAI	GTCTC	2 cut(s)	349, 1388
BstMBI	GATC	5 cut(s)	1281, 1712, 1864, 2151, 2172
BstMCI	CGRYCG	1 cut(s)	108
BstMWI	GCNNNNNNNGC	1 cut(s)	536
BstNI	CCWGG	2 cut(s)	2015, 2082
BstNSI	RCATGY	4 cut(s)	427, 1039, 1198, 1398
BstSCI	CCNGG	4 cut(s)	143, 444, 2013, 2080
BstSFI	CTRYAG	3 cut(s)	1093, 1333, 2086
BstUI	CGCG	2 cut(s)	110, 776
BstV1I	GCAGC	5 cut(s)	466, 711, 714, 1303, 1713
BstX2I	RGATCY	2 cut(s)	1712, 2172
BstYI	RGATCY	2 cut(s)	1712, 2172
Bsu15I	ATCGAT	1 cut(s)	2154
BsuI	GTATCC	1 cut(s)	2201
BsuRI	GGCC	2 cut(s)	510, 1379
BsuTUI	ATCGAT	1 cut(s)	2154
BtgI	CCRYGG	1 cut(s)	774
BtgZI	GCGATG	1 cut(s)	989
BtrI	CACGTC	1 cut(s)	340
BtsCI	GGATG	6 cut(s)	502, 616, 1733, 2055, 2143, 2206
Cac8I	GCNNGC	5 cut(s)	425, 512, 821, 1699, 1792
CfoI	GCGC	3 cut(s)	883, 925, 994
Cfr10I	RCCGGY	3 cut(s)	103, 230, 510
Cfr13I	GGNCC	3 cut(s)	147, 187, 409
Cfr42I	CCGCGG	1 cut(s)	777
ClaI	ATCGAT	1 cut(s)	2154
CseI	GACGC	2 cut(s)	235, 429
Csp6I	GTAC	1 cut(s)	1295
CspAI	ACCGGT	1 cut(s)	230
CviQI	GTAC	1 cut(s)	1295
DdeI	CTNAG	5 cut(s)	69, 782, 926, 1062, 1808
DpnI	GATC	5 cut(s)	1283, 1714, 1866, 2153, 2174
DpnII	GATC	5 cut(s)	1281, 1712, 1864, 2151, 2172
EaeI	YGGCCR	2 cut(s)	508, 1377
Eam1104I	CTCTTC	2 cut(s)	747, 2099
EarI	CTCTTC	2 cut(s)	747, 2099
Ecl136II	GAGCTC	1 cut(s)	1630
Eco130I	CCWWGG	2 cut(s)	52, 1772
Eco24I	GRGCYC	1 cut(s)	1632
Eco31I	GGTCTC	1 cut(s)	349
Eco32I	GATATC	2 cut(s)	981, 1587
Eco47I	GGWCC	3 cut(s)	147, 187, 409
Eco53kI	GAGCTC	1 cut(s)	1630
Eco57I	CTGAAG	1 cut(s)	370
Eco88I	CYCGRG	1 cut(s)	92
EcoICRI	GAGCTC	1 cut(s)	1630
EcoO109I	RGGNCCY	1 cut(s)	187
EcoRI	GAATTC	3 cut(s)	646, 955, 1160
EcoRII	CCWGG	2 cut(s)	2013, 2080
EcoRV	GATATC	2 cut(s)	981, 1587
EcoT14I	CCWWGG	2 cut(s)	52, 1772
EcoT22I	ATGCAT	2 cut(s)	1041, 2145
EcoT38I	GRGCYC	1 cut(s)	1632
ErhI	CCWWGG	2 cut(s)	52, 1772
FauI	CCCGC	3 cut(s)	420, 2016, 2031
FauNDI	CATATG	4 cut(s)	487, 1707, 1936, 2193
FbaI	TGATCA	1 cut(s)	1864
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	5 cut(s)	480, 725, 728, 1317, 1702
FokI	GGATG	6 cut(s)	509, 623, 1740, 2062, 2130, 2213
FriOI	GRGCYC	1 cut(s)	1632
Fsp4HI	GCNGC	5 cut(s)	480, 725, 728, 1317, 1702
FspBI	CTAG	2 cut(s)	1625, 1970
FspI	TGCGCA	1 cut(s)	993
GlaI	GCGC	3 cut(s)	882, 924, 993
GluI	GCNGC	5 cut(s)	480, 725, 728, 1317, 1702
GsaI	CCCAGC	1 cut(s)	1821
GsuI	CTGGAG	1 cut(s)	486
HaeIII	GGCC	2 cut(s)	510, 1379
HapII	CCGG	8 cut(s)	104, 145, 231, 288, 446, 511, 1664, 1941
HgaI	GACGC	2 cut(s)	235, 429
HhaI	GCGC	3 cut(s)	883, 925, 994
Hin6I	GCGC	3 cut(s)	881, 923, 992
HinP1I	GCGC	3 cut(s)	881, 923, 992
HincII	GTYRAC	1 cut(s)	1192
HindII	GTYRAC	1 cut(s)	1192
HinfI	GANTC	9 cut(s)	71, 127, 449, 826, 1004, 1458, 1850, 1973, 2107
HpaII	CCGG	8 cut(s)	104, 145, 231, 288, 446, 511, 1664, 1941
HphI	GGTGA	4 cut(s)	443, 853, 2080, 2144
Hpy166II	GTNNAC	4 cut(s)	250, 520, 1192, 1967
Hpy188I	TCNGA	7 cut(s)	389, 1009, 1033, 1230, 1286, 1917, 2177
Hpy8I	GTNNAC	4 cut(s)	250, 520, 1192, 1967
Hpy99I	CGWCG	1 cut(s)	423
HpyAV	CCTTC	4 cut(s)	2172, 2191, 2198, 2226
HpyCH4III	ACNGT	5 cut(s)	526, 667, 693, 1334, 1980
HpyCH4IV	ACGT	5 cut(s)	279, 339, 616, 1671, 1986
HpyF10VI	GCNNNNNNNGC	1 cut(s)	536
HpyF3I	CTNAG	5 cut(s)	69, 782, 926, 1062, 1808
HpySE526I	ACGT	5 cut(s)	279, 339, 616, 1671, 1986
HspAI	GCGC	3 cut(s)	881, 923, 992
Kpn2I	TCCGGA	1 cut(s)	287
KroI	GCCGGC	1 cut(s)	510
KroNI	GCCGGC	1 cut(s)	512
Ksp22I	TGATCA	1 cut(s)	1864
KspI	CCGCGG	1 cut(s)	777
Kzo9I	GATC	5 cut(s)	1281, 1712, 1864, 2151, 2172
LmnI	GCTCC	2 cut(s)	1780, 1931
Lsp1109I	GCAGC	5 cut(s)	466, 711, 714, 1303, 1713
LweI	GCATC	8 cut(s)	601, 910, 1213, 1632, 1881, 2010, 2130, 2152
MaeI	CTAG	2 cut(s)	1625, 1970
MaeII	ACGT	5 cut(s)	279, 339, 616, 1671, 1986
MaeIII	GTNAC	6 cut(s)	137, 652, 886, 1097, 1613, 1672
MalI	GATC	5 cut(s)	1283, 1714, 1866, 2153, 2174
MbiI	CCGCTC	1 cut(s)	2038
MboI	GATC	5 cut(s)	1281, 1712, 1864, 2151, 2172
MboII	GAAGA	5 cut(s)	761, 764, 1535, 2039, 2116
MfeI	CAATTG	1 cut(s)	1476
MflI	RGATCY	2 cut(s)	1712, 2172
MhlI	GDGCHC	3 cut(s)	1146, 1489, 1632
MlsI	TGGCCA	1 cut(s)	1379
MluNI	TGGCCA	1 cut(s)	1379
MlyI	GAGTC	4 cut(s)	80, 136, 1859, 2116
MmeI	TCCRAC	3 cut(s)	190, 387, 544
Mox20I	TGGCCA	1 cut(s)	1379
Mph1103I	ATGCAT	2 cut(s)	1041, 2145
MroI	TCCGGA	1 cut(s)	287
MroNI	GCCGGC	1 cut(s)	510
MscI	TGGCCA	1 cut(s)	1379
MseI	TTAA	8 cut(s)	23, 534, 579, 1104, 1449, 1895, 1952, 2183
MslI	CAYNNNNRTG	1 cut(s)	1137
Msp20I	TGGCCA	1 cut(s)	1379
MspA1I	CMGCKG	1 cut(s)	776
MspI	CCGG	8 cut(s)	104, 145, 231, 288, 446, 511, 1664, 1941
MspR9I	CCNGG	4 cut(s)	145, 446, 2015, 2082
MunI	CAATTG	1 cut(s)	1476
Mva1269I	GAATGC	4 cut(s)	883, 1344, 1554, 1582
MvaI	CCWGG	2 cut(s)	2015, 2082
MvnI	CGCG	2 cut(s)	110, 776
MwoI	GCNNNNNNNGC	1 cut(s)	536
NaeI	GCCGGC	1 cut(s)	512
NciI	CCSGG	2 cut(s)	145, 446
NdeI	CATATG	4 cut(s)	487, 1707, 1936, 2193
NdeII	GATC	5 cut(s)	1281, 1712, 1864, 2151, 2172
NgoMIV	GCCGGC	1 cut(s)	510
NlaIV	GGNNCC	2 cut(s)	235, 798
NmeAIII	GCCGAG	2 cut(s)	1330, 1838
NmuCI	GTSAC	3 cut(s)	137, 886, 1097
NsbI	TGCGCA	1 cut(s)	993
NsiI	ATGCAT	2 cut(s)	1041, 2145
NspI	RCATGY	4 cut(s)	427, 1039, 1198, 1398
NspV	TTCGAA	2 cut(s)	81, 318
PaeI	GCATGC	1 cut(s)	427
PaeR7I	CTCGAG	1 cut(s)	92
PasI	CCCWGGG	1 cut(s)	2014
PciI	ACATGT	1 cut(s)	1194
PcsI	WCGNNNNNNNCGW	1 cut(s)	896
PctI	GAATGC	4 cut(s)	883, 1344, 1554, 1582
PdiI	GCCGGC	1 cut(s)	512
PfeI	GAWTC	5 cut(s)	449, 826, 1004, 1458, 1973
PflFI	GACNNNGTC	1 cut(s)	341
PflMI	CCANNNNNTGG	1 cut(s)	966
PinAI	ACCGGT	1 cut(s)	230
PkrI	GCNGC	5 cut(s)	481, 726, 729, 1318, 1703
PleI	GAGTC	4 cut(s)	79, 135, 1858, 2115
PpsI	GAGTC	4 cut(s)	79, 135, 1858, 2115
Ppu21I	YACGTR	2 cut(s)	617, 1987
PpuMI	RGGWCCY	1 cut(s)	187
PscI	ACATGT	1 cut(s)	1194
PshBI	ATTAAT	1 cut(s)	1104
Psp124BI	GAGCTC	1 cut(s)	1632
Psp5II	RGGWCCY	1 cut(s)	187
Psp6I	CCWGG	2 cut(s)	2013, 2080
PspFI	CCCAGC	1 cut(s)	1817
PspGI	CCWGG	2 cut(s)	2013, 2080
PspN4I	GGNNCC	2 cut(s)	235, 798
PspPI	GGNCC	3 cut(s)	147, 187, 409
PspPPI	RGGWCCY	1 cut(s)	187
PsuI	RGATCY	2 cut(s)	1712, 2172
PsyI	GACNNNGTC	1 cut(s)	341
RsaI	GTAC	1 cut(s)	1296
RsaNI	GTAC	1 cut(s)	1295
RseI	CAYNNNNRTG	1 cut(s)	1137
SacI	GAGCTC	1 cut(s)	1632
SacII	CCGCGG	1 cut(s)	777
SaqAI	TTAA	8 cut(s)	23, 534, 579, 1104, 1449, 1895, 1952, 2183
SatI	GCNGC	5 cut(s)	480, 725, 728, 1317, 1702
Sau3AI	GATC	5 cut(s)	1281, 1712, 1864, 2151, 2172
Sau96I	GGNCC	3 cut(s)	147, 187, 409
SchI	GAGTC	4 cut(s)	80, 136, 1859, 2116
ScrFI	CCNGG	4 cut(s)	145, 446, 2015, 2082
SduI	GDGCHC	3 cut(s)	1146, 1489, 1632
SfaNI	GCATC	8 cut(s)	601, 910, 1213, 1632, 1881, 2010, 2130, 2152
SfcI	CTRYAG	3 cut(s)	1093, 1333, 2086
Sfr274I	CTCGAG	1 cut(s)	92
Sfr303I	CCGCGG	1 cut(s)	777
SfuI	TTCGAA	2 cut(s)	81, 318
SgrBI	CCGCGG	1 cut(s)	777
SinI	GGWCC	3 cut(s)	147, 187, 409
SlaI	CTCGAG	1 cut(s)	92
SmiMI	CAYNNNNRTG	1 cut(s)	1137
SmlI	CTYRAG	2 cut(s)	92, 1145
SmoI	CTYRAG	2 cut(s)	92, 1145
SphI	GCATGC	1 cut(s)	427
SsiI	CCGC	7 cut(s)	110, 427, 774, 776, 839, 2023, 2038
SspMI	CTAG	2 cut(s)	1625, 1970
SstI	GAGCTC	1 cut(s)	1632
StyD4I	CCNGG	4 cut(s)	143, 444, 2013, 2080
StyI	CCWWGG	2 cut(s)	52, 1772
TaaI	ACNGT	5 cut(s)	526, 667, 693, 1334, 1980
TaiI	ACGT	5 cut(s)	282, 342, 619, 1674, 1989
TatI	WGTACW	1 cut(s)	1294
TfiI	GAWTC	5 cut(s)	449, 826, 1004, 1458, 1973
Tru1I	TTAA	8 cut(s)	23, 534, 579, 1104, 1449, 1895, 1952, 2183
Tru9I	TTAA	8 cut(s)	23, 534, 579, 1104, 1449, 1895, 1952, 2183
TseFI	GTSAC	3 cut(s)	137, 886, 1097
TseI	GCWGC	5 cut(s)	479, 724, 727, 1316, 1701
Tsp45I	GTSAC	3 cut(s)	137, 886, 1097
Tth111I	GACNNNGTC	1 cut(s)	341
Van91I	CCANNNNNTGG	1 cut(s)	966
VpaK11BI	GGWCC	3 cut(s)	147, 187, 409
VspI	ATTAAT	1 cut(s)	1104
XapI	RAATTY	8 cut(s)	77, 646, 803, 955, 1160, 1469, 1516, 1757
XbaI	TCTAGA	1 cut(s)	1624
XceI	RCATGY	4 cut(s)	427, 1039, 1198, 1398
XhoI	CTCGAG	1 cut(s)	92
XmiI	GTMKAC	1 cut(s)	249
XspI	CTAG	2 cut(s)	1625, 1970
Zsp2I	ATGCAT	2 cut(s)	1041, 2145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.