Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001580

Physical Location & Seq

Genomic Coordinates Reverse (-)

13325877 .. 13327982

Gene Structure 2106 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G006500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2106 bp

ATGAATCTTTCATCTCTTCCTTTTCACTTCCGTTCCTTAATCACAACCCTCATCCACTACAGTCGTCAAAAACACCTCCAAAACGGCAAAGCTGTCCACGCTCACATCATCAAAACCGGGTCCTCTTCTTCCGTCTATGTCGCCAACAGCCTCGTCAACCTCTACGTCAAATGTGGAGACTTACCCACAGCCAAGCTCGTGTTCGAGGCCACACCCAACAAGGACGTGGTCTCATGGAACAATCTCATCAATGCCTACTCTCACCAAGGCTCCTCCTCACTTGTTATGGACCTTTTTCGACGCATGAGGGCAGACAACACCAACCCAAATGCCCACACTTTCGCTGGAGTCTTCACTGCTGCTTCCCATGAAGCGTCTGGCGTTTTTGGGGGGCAGAAGATTCATGCTCTTGCGATCAAAGCAGCGAGCTTTTTCGACGTGTTTGTTGGGAGTTCTTTACTTAATATGTACTGTAAAATGGGTCTTGTGGGGGATGCACGTAAGGTGTTTGATAGAATGCCTGAGAGGAATTCGGTTTCGTGGGCTACTATGATTTCGGGGTATGCAATGCAACGCCTGGCTGGAGATGCGTTGGAGCTTTTCGGGTTGATGCGTAGAAGTGAGGAGAATGAGGGAGAGAATGAGTTTATTTTGACTAGTGTTGTGAGTGCCTTGGCTGTTCCTGAGTTTGTTGATACGGGGAAGCAAATTCACTGTCTTGCGGTGAAAAATGGGCTGATGAGTTTTGTTTCTGTTGGGAATGCGGTTGTTACAATGTATGCGAAATGTGGAAATTTGTACGATGCGCTTAGAACTTTTGAATTGTGTGGTGATAAGAATTCCATCACATGGTCTGCGATGATATGTGGTTTTGCACAGAGTGGGGATTCCTGGAAGGCTTTGAACTTGCTTCGAGACATGCATTTTTCGGGGATAAAGCCAAGCCAGTACACGTTTGTTGGGGTCATCAATGCTTGCGGTGACATTGGTGCTCTTAAAGAAGGACAACAAGTGCATGGTTATTTGTTGAAGATGGGATTCGAATTGCAGGTATATATAATGTCAGCTTTGGTTGACATGTATGCCAAATGCGGTAGAGTTTGTGGGTTTGATTATTTAAAAGAACCTGATGTTGTTCTTTGGACTTCTATGATTGGAGGGTACGTACAAAATGGGGAGTATGAAGCTGCTTTGGGTTTGTACTGCAGAATGCACAAAGAGGGAATCATGCCCAATGAACTTACTATGGCTAGTGTCTTAAAAGCATGCTCGAGCCTAAGTTCTTTTGAACAAGGAAAGCAAATCCATGCCCGTACAATCAAGTATGGATTCAGTCTTGAAGTTCCAATTGGAAGTGCTCTTTCCACCATGTATGCAAAGTGTGGGAATTTGGAAGATGGGAATCTTGTATTTAGGAGGATGCCAGTGAGGGATGTAGTAGCTTGGAATGGAATAATCTCTGGCCTTTCGCAAAATGGTCGAGGGACAGAAGCTTTAGAGCTCTTTGAGGAGATGCGAATGGGGGATACAAAGCCGGATTACGTCACATTTGTGAATGTCCTCTCCGCTTGCAGCCATATGGGATTTGTTGAGAGAGGATGGATTTATTTCAAGATGATGTATAATGAATTTGGCATAGCCCCAAGGGTGGAGCATTATGCTTGCATGGTTGATGTCCTGAGCCGCGCTGGGAGGTTAGATGAAGCCAAAGACTTCATAGAATCAGCAACTATCGATCATGGCATTTGTTTATGGCGTATTTTATTAAGTGCTTGTCGTAACTATCGGAATTATGAATTGGGAGCTTATGCTGGAGAGAAACTTATTGAGTTAGGAACACCGGAATCATCTACGTATGTGTTGTTGTCAAGCATATATACTTCCTTGGGCAGGCGGGAAGATGTAGAGCGGGTAAGGAGGATGATGAATCTTAGAGGGTTGAGTAAGGAGCCTGGGTGTAGCTGGATTGAGTTGAAGAGTCAGGTTCATGTGTTTGTTGTTCATGATGAGATGCATCCGCATATTGAAAATATATATGCTGAGATCCGAAGGTTAAAAAAGCATATGAAGGATGAAGGTTACCAACCTTCTAGTATCACCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

701

Amino Acids

78.14

Weight (kDa)

7.29

Isoelectric Point (pI)

45.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	74 - 120	2.8e-09	PPR repeat family
PPR_2	PF13041	279 - 326	2.5e-09	PPR repeat family
PPR_2	PF13041	376 - 424	1.6e-12	PPR repeat family
PPR	PF01535	379 - 409	8.3e-08	PPR repeat
PPR_2	PF13041	477 - 525	1.2e-10	PPR repeat family
PPR	PF01535	480 - 506	9.4e-07	PPR repeat
E_motif	PF20431	595 - 657	4.3e-18	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680
fragaria_vesca	FvH4_7g03841 FvH4_7g03850
malus_domestica	MD02G1276700.v1.1
prunus_persica	Prupe.2G043400_v2.0.a1
pyrus_communis	pycom02g23700
rosa_chinensis	RchiOBHm_Chr1g0326811 RchiOBHm_Chr1g0326821 RchiOBHm_Chr1g0327271 RchiOBHm_Chr1g0327321
rosa_laevigata	RLG00000030002 RLG00000030005 RLG00000030054
rosa_multiflora	Rmu_sc0001021.1_g000002 Rmu_sc0003600.1_g000043 Rmu_sc0005038.1_g000015 Rmu_sc0010151.1_g000003 Rmu_sc0010151.1_g000004 Rmu_sc0020365.1_g000001
rosa_roxburghii	Rroxscaffold_2G00128000 Rroxscaffold_4G00322770 Rroxscaffold_4G00322870
rosa_rugosa	Rorug01G0064900 Rorug01G0065300 Rorug01G0065400 Rorug01G0065500 Rorug01G0065500
rosa_samantha	Rh1AG082500 Rh1AG083100 Rh1BG065600 Rh1BG065900 Rh1BG066000 Rh1CG080500 Rh1DG087500 Rh2AG148500 Rh2AG148600 Rh2BG154000 Rh2DG154200 Rh3CG329400
rosa_wichuraiana	Rw1G006500 Rw1G006530 Rw2G011590 Rw2G011600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1039
AccB7I	CCANNNNNTGG	1 cut(s)	849
AccBSI	CCGCTC	1 cut(s)	1909
AccII	CGCG	1 cut(s)	1686
AciI	CCGC	9 cut(s)	722, 764, 978, 1092, 1566, 1684, 1894, 1909, 2018
AclWI	GGATC	1 cut(s)	2038
AcsI	RAATTY	6 cut(s)	529, 708, 793, 838, 1387, 1628
AdeI	CACNNNGTG	1 cut(s)	881
AfaI	GTAC	7 cut(s)	470, 800, 950, 1163, 1167, 1202, 1315
AfiI	CCNNNNNNNGG	3 cut(s)	849, 1648, 1890
AflIII	ACRYGT	3 cut(s)	438, 951, 1077
AgsI	TTSAA	8 cut(s)	821, 904, 1030, 1289, 1340, 1612, 1975, 2027
AhlI	ACTAGT	1 cut(s)	656
AjiI	CACGTC	2 cut(s)	226, 439
AjnI	CCWGG	3 cut(s)	576, 890, 1951
AjuI	GAANNNNNNNTTGG	6 cut(s)	185, 217, 1332, 1364, 1781, 1813
AleI	CACNNNNGTG	1 cut(s)	1550
Alw21I	GWGCWC	3 cut(s)	994, 1360, 1503
Alw26I	GTCTC	3 cut(s)	171, 235, 909
AlwI	GGATC	1 cut(s)	2038
Ama87I	CYCGRG	1 cut(s)	1270
AoxI	GGCC	2 cut(s)	207, 1462
ApeKI	GCWGC	4 cut(s)	359, 422, 1187, 1572
ApoI	RAATTY	6 cut(s)	529, 708, 793, 838, 1387, 1628
ArsI	GACNNNNNNTTYG	2 cut(s)	700, 732
AspLEI	GCGC	2 cut(s)	808, 1688
AspS9I	GGNCC	2 cut(s)	120, 289
AsuC2I	CCSGG	1 cut(s)	118
AsuHPI	GGTGA	5 cut(s)	254, 736, 842, 992, 2089
AsuII	TTCGAA	1 cut(s)	1041
AvaI	CYCGRG	1 cut(s)	1270
AvaII	GGWCC	2 cut(s)	120, 289
BanII	GRGCYC	1 cut(s)	1503
BauI	CACGAG	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	343
Bbv12I	GWGCWC	3 cut(s)	994, 1360, 1503
BbvI	GCAGC	4 cut(s)	346, 434, 1174, 1584
BccI	CCATC	4 cut(s)	851, 1027, 1391, 1593
BceAI	ACGGC	1 cut(s)	100
BcgI	CGANNNNNNTGC	2 cut(s)	1460, 1494
BciT130I	CCWGG	3 cut(s)	578, 892, 1953
BciVI	GTATCC	1 cut(s)	1519
BcnI	CCSGG	1 cut(s)	118
BcoDI	GTCTC	3 cut(s)	171, 235, 909
BcuI	ACTAGT	1 cut(s)	656
BfaI	CTAG	3 cut(s)	657, 1251, 2091
BfmI	CTRYAG	2 cut(s)	58, 1204
BfuAI	ACCTGC	1 cut(s)	1039
BfuI	GTATCC	1 cut(s)	1519
BisI	GCNGC	5 cut(s)	360, 423, 1188, 1573, 1684
BlsI	GCNGC	5 cut(s)	361, 424, 1189, 1574, 1685
Bme1390I	CCNGG	4 cut(s)	118, 578, 892, 1953
Bme18I	GGWCC	2 cut(s)	120, 289
BmeT110I	CYCGRG	1 cut(s)	1270
BmgBI	CACGTC	2 cut(s)	226, 439
BmgT120I	GGNCC	2 cut(s)	120, 289
BmiI	GGNNCC	3 cut(s)	121, 271, 1950
BmrFI	CCNGG	4 cut(s)	118, 578, 892, 1953
BmsI	GCATC	8 cut(s)	484, 577, 600, 793, 1410, 1503, 2001, 2023
BpiI	GAAGAC	1 cut(s)	343
BpmI	CTGGAG	3 cut(s)	366, 603, 1833
Bpu10I	CCTNAGC	1 cut(s)	1679
Bpu14I	TTCGAA	1 cut(s)	1041
BpuMI	CCSGG	1 cut(s)	118
Bsa29I	ATCGAT	1 cut(s)	1734
BsaAI	YACGTR	3 cut(s)	500, 1165, 1854
BsaBI	GATNNNNATC	1 cut(s)	1401
BsaI	GGTCTC	1 cut(s)	235
BsaJI	CCNNGG	5 cut(s)	265, 672, 1643, 1884, 1952
BsaWI	WCCGGW	1 cut(s)	1840
BsaXI	ACNNNNNCTCC	6 cut(s)	254, 284, 1149, 1179, 1940, 1970
Bsc4I	CCNNNNNNNGG	3 cut(s)	849, 1648, 1890
Bse1I	ACTGG	2 cut(s)	946, 1424
Bse3DI	GCAATG	1 cut(s)	573
Bse8I	GATNNNNATC	1 cut(s)	1401
BseBI	CCWGG	3 cut(s)	578, 892, 1953
BseCI	ATCGAT	1 cut(s)	1734
BseDI	CCNNGG	5 cut(s)	265, 672, 1643, 1884, 1952
BseGI	GGATG	8 cut(s)	51, 499, 1425, 1438, 1604, 1926, 2014, 2077
BseJI	GATNNNNATC	1 cut(s)	1401
BseLI	CCNNNNNNNGG	3 cut(s)	849, 1648, 1890
BseMI	GCAATG	1 cut(s)	573
BseMII	CTCAG	4 cut(s)	513, 675, 1670, 2031
BseNI	ACTGG	2 cut(s)	946, 1424
BseRI	GAGGAG	4 cut(s)	262, 265, 638, 1523
BseXI	GCAGC	4 cut(s)	346, 434, 1174, 1584
BseYI	CCCAGC	1 cut(s)	1688
Bsh1236I	CGCG	1 cut(s)	1686
BshFI	GGCC	2 cut(s)	209, 1464
BshVI	ATCGAT	1 cut(s)	1734
BsiHKAI	GWGCWC	3 cut(s)	994, 1360, 1503
BsiHKCI	CYCGRG	1 cut(s)	1270
BsiSI	CCGG	3 cut(s)	117, 1535, 1841
BslFI	GGGAC	1 cut(s)	1498
BslI	CCNNNNNNNGG	3 cut(s)	849, 1648, 1890
BsmAI	GTCTC	3 cut(s)	171, 235, 909
BsmFI	GGGAC	1 cut(s)	1498
BsmI	GAATGC	3 cut(s)	522, 766, 1215
BsnI	GGCC	2 cut(s)	209, 1464
Bso31I	GGTCTC	1 cut(s)	235
BsoBI	CYCGRG	1 cut(s)	1270
Bsp119I	TTCGAA	1 cut(s)	1041
Bsp1286I	GDGCHC	3 cut(s)	994, 1360, 1503
Bsp143I	GATC	3 cut(s)	414, 1735, 2043
BspACI	CCGC	9 cut(s)	722, 764, 978, 1092, 1566, 1684, 1894, 1909, 2018
BspANI	GGCC	2 cut(s)	209, 1464
BspCNI	CTCAG	4 cut(s)	514, 676, 1671, 2032
BspDI	ATCGAT	1 cut(s)	1734
BspFNI	CGCG	1 cut(s)	1686
BspHI	TCATGA	1 cut(s)	2002
BspLI	GGNNCC	3 cut(s)	121, 271, 1950
BspMAI	CTGCAG	1 cut(s)	1208
BspMI	ACCTGC	1 cut(s)	1039
BspPI	GGATC	1 cut(s)	2038
BspT104I	TTCGAA	1 cut(s)	1041
BspTNI	GGTCTC	1 cut(s)	235
BsrBI	CCGCTC	1 cut(s)	1909
BsrDI	GCAATG	1 cut(s)	573
BsrI	ACTGG	2 cut(s)	946, 1424
BssECI	CCNNGG	5 cut(s)	265, 672, 1643, 1884, 1952
BssMI	GATC	3 cut(s)	414, 1735, 2043
BssSI	CACGAG	1 cut(s)	197
BssT1I	CCWWGG	4 cut(s)	265, 672, 1643, 1884
Bst2BI	CACGAG	1 cut(s)	197
Bst2UI	CCWGG	3 cut(s)	578, 892, 1953
Bst4CI	ACNGT	3 cut(s)	62, 473, 716
Bst6I	CTCTTC	3 cut(s)	21, 130, 1970
BstBAI	YACGTR	3 cut(s)	500, 1165, 1854
BstBI	TTCGAA	1 cut(s)	1041
BstC8I	GCNNGC	6 cut(s)	427, 976, 1267, 1570, 1663, 1892
BstDEI	CTNAG	7 cut(s)	522, 684, 809, 1277, 1679, 1931, 2040
BstEII	GGTNACC	1 cut(s)	2078
BstENI	CCTNNNNNAGG	1 cut(s)	1888
BstF5I	GGATG	8 cut(s)	51, 499, 1425, 1438, 1604, 1926, 2014, 2077
BstFNI	CGCG	1 cut(s)	1686
BstHHI	GCGC	2 cut(s)	808, 1688
BstKTI	GATC	3 cut(s)	417, 1738, 2046
BstMAI	GTCTC	3 cut(s)	171, 235, 909
BstMBI	GATC	3 cut(s)	414, 1735, 2043
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 419, 587
BstNI	CCWGG	3 cut(s)	578, 892, 1953
BstNSI	RCATGY	3 cut(s)	922, 1081, 1269
BstPI	GGTNACC	1 cut(s)	2078
BstSCI	CCNGG	4 cut(s)	116, 576, 890, 1951
BstSFI	CTRYAG	2 cut(s)	58, 1204
BstSNI	TACGTA	2 cut(s)	1165, 1854
BstUI	CGCG	1 cut(s)	1686
BstV1I	GCAGC	4 cut(s)	346, 434, 1174, 1584
BstV2I	GAAGAC	1 cut(s)	343
BstX2I	RGATCY	1 cut(s)	2043
BstYI	RGATCY	1 cut(s)	2043
Bsu15I	ATCGAT	1 cut(s)	1734
BsuI	GTATCC	1 cut(s)	1519
BsuRI	GGCC	2 cut(s)	209, 1464
BsuTUI	ATCGAT	1 cut(s)	1734
BtgZI	GCGATG	1 cut(s)	872
BtrI	CACGTC	2 cut(s)	226, 439
BtsCI	GGATG	8 cut(s)	51, 499, 1425, 1438, 1604, 1926, 2014, 2077
BtsI	GCAGTG	1 cut(s)	354
BtsIMutI	CAGTG	3 cut(s)	354, 712, 1431
BveI	ACCTGC	1 cut(s)	1039
Cac8I	GCNNGC	6 cut(s)	427, 976, 1267, 1570, 1663, 1892
CciI	TCATGA	1 cut(s)	2002
CfoI	GCGC	2 cut(s)	808, 1688
Cfr13I	GGNCC	2 cut(s)	120, 289
ClaI	ATCGAT	1 cut(s)	1734
CseI	GACGC	2 cut(s)	309, 363
Csp6I	GTAC	7 cut(s)	469, 799, 949, 1162, 1166, 1201, 1314
CviQI	GTAC	7 cut(s)	469, 799, 949, 1162, 1166, 1201, 1314
DdeI	CTNAG	7 cut(s)	522, 684, 809, 1277, 1679, 1931, 2040
DpnI	GATC	3 cut(s)	416, 1737, 2045
DpnII	GATC	3 cut(s)	414, 1735, 2043
DraI	TTTAAA	1 cut(s)	1119
DraIII	CACNNNGTG	1 cut(s)	881
Eam1104I	CTCTTC	3 cut(s)	21, 130, 1970
EarI	CTCTTC	3 cut(s)	21, 130, 1970
Ecl136II	GAGCTC	1 cut(s)	1501
Eco105I	TACGTA	2 cut(s)	1165, 1854
Eco130I	CCWWGG	4 cut(s)	265, 672, 1643, 1884
Eco24I	GRGCYC	1 cut(s)	1503
Eco31I	GGTCTC	1 cut(s)	235
Eco47I	GGWCC	2 cut(s)	120, 289
Eco53kI	GAGCTC	1 cut(s)	1501
Eco88I	CYCGRG	1 cut(s)	1270
Eco91I	GGTNACC	1 cut(s)	2078
EcoICRI	GAGCTC	1 cut(s)	1501
EcoNI	CCTNNNNNAGG	1 cut(s)	1888
EcoO109I	RGGNCCY	1 cut(s)	120
EcoO65I	GGTNACC	1 cut(s)	2078
EcoRI	GAATTC	2 cut(s)	529, 838
EcoRII	CCWGG	3 cut(s)	576, 890, 1951
EcoT14I	CCWWGG	4 cut(s)	265, 672, 1643, 1884
EcoT22I	ATGCAT	2 cut(s)	924, 2016
EcoT38I	GRGCYC	1 cut(s)	1503
ErhI	CCWWGG	4 cut(s)	265, 672, 1643, 1884
FaqI	GGGAC	1 cut(s)	1498
FauI	CCCGC	2 cut(s)	1887, 1902
FauNDI	CATATG	2 cut(s)	1578, 2064
Fnu4HI	GCNGC	5 cut(s)	360, 423, 1188, 1573, 1684
FokI	GGATG	8 cut(s)	38, 506, 1432, 1445, 1611, 1933, 2001, 2084
FriOI	GRGCYC	1 cut(s)	1503
Fsp4HI	GCNGC	5 cut(s)	360, 423, 1188, 1573, 1684
FspBI	CTAG	3 cut(s)	657, 1251, 2091
GlaI	GCGC	2 cut(s)	807, 1687
GluI	GCNGC	5 cut(s)	360, 423, 1188, 1573, 1684
GsaI	CCCAGC	1 cut(s)	1692
GsuI	CTGGAG	3 cut(s)	366, 603, 1833
HaeIII	GGCC	2 cut(s)	209, 1464
HapII	CCGG	3 cut(s)	117, 1535, 1841
HgaI	GACGC	2 cut(s)	309, 363
HhaI	GCGC	2 cut(s)	808, 1688
Hin6I	GCGC	2 cut(s)	806, 1686
HinP1I	GCGC	2 cut(s)	806, 1686
HincII	GTYRAC	2 cut(s)	157, 1075
HindII	GTYRAC	2 cut(s)	157, 1075
HindIII	AAGCTT	1 cut(s)	1491
HpaII	CCGG	3 cut(s)	117, 1535, 1841
HphI	GGTGA	5 cut(s)	254, 736, 842, 992, 2089
Hpy166II	GTNNAC	4 cut(s)	97, 157, 951, 1075
Hpy188I	TCNGA	2 cut(s)	1788, 2048
Hpy188III	TCNNGA	6 cut(s)	683, 914, 1337, 1612, 1678, 2003
Hpy8I	GTNNAC	4 cut(s)	97, 157, 951, 1075
Hpy99I	CGWCG	2 cut(s)	303, 440
HpyAV	CCTTC	6 cut(s)	889, 995, 2043, 2062, 2069, 2097
HpyCH4III	ACNGT	3 cut(s)	62, 473, 716
HpyCH4IV	ACGT	8 cut(s)	165, 225, 438, 499, 953, 1164, 1542, 1853
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 419, 587
HpyF3I	CTNAG	7 cut(s)	522, 684, 809, 1277, 1679, 1931, 2040
HpySE526I	ACGT	8 cut(s)	165, 225, 438, 499, 953, 1164, 1542, 1853
HspAI	GCGC	2 cut(s)	806, 1686
Kzo9I	GATC	3 cut(s)	414, 1735, 2043
LmnI	GCTCC	5 cut(s)	275, 595, 1651, 1802, 1948
Lsp1109I	GCAGC	4 cut(s)	346, 434, 1174, 1584
LweI	GCATC	8 cut(s)	484, 577, 600, 793, 1410, 1503, 2001, 2023
MaeI	CTAG	3 cut(s)	657, 1251, 2091
MaeII	ACGT	8 cut(s)	165, 225, 438, 499, 953, 1164, 1542, 1853
MaeIII	GTNAC	5 cut(s)	769, 980, 1543, 1778, 2078
MalI	GATC	3 cut(s)	416, 1737, 2045
MbiI	CCGCTC	1 cut(s)	1909
MboI	GATC	3 cut(s)	414, 1735, 2043
MboII	GAAGA	9 cut(s)	8, 117, 120, 343, 409, 1042, 1406, 1910, 1987
MfeI	CAATTG	1 cut(s)	1347
MflI	RGATCY	1 cut(s)	2043
MhlI	GDGCHC	3 cut(s)	994, 1360, 1503
MlyI	GAGTC	2 cut(s)	357, 1987
MmeI	TCCRAC	1 cut(s)	573
Mph1103I	ATGCAT	2 cut(s)	924, 2016
MseI	TTAA	7 cut(s)	38, 462, 996, 1118, 1259, 1766, 2054
MslI	CAYNNNNRTG	1 cut(s)	1550
MspI	CCGG	3 cut(s)	117, 1535, 1841
MspR9I	CCNGG	4 cut(s)	118, 578, 892, 1953
MunI	CAATTG	1 cut(s)	1347
Mva1269I	GAATGC	3 cut(s)	522, 766, 1215
MvaI	CCWGG	3 cut(s)	578, 892, 1953
MvnI	CGCG	1 cut(s)	1686
MwoI	GCNNNNNNNGC	3 cut(s)	98, 419, 587
NciI	CCSGG	1 cut(s)	118
NdeI	CATATG	2 cut(s)	1578, 2064
NdeII	GATC	3 cut(s)	414, 1735, 2043
NlaIV	GGNNCC	3 cut(s)	121, 271, 1950
NmuCI	GTSAC	2 cut(s)	980, 1543
NsiI	ATGCAT	2 cut(s)	924, 2016
NspI	RCATGY	3 cut(s)	922, 1081, 1269
NspV	TTCGAA	1 cut(s)	1041
OliI	CACNNNNGTG	1 cut(s)	1550
PaeI	GCATGC	1 cut(s)	1269
PaeR7I	CTCGAG	1 cut(s)	1270
PagI	TCATGA	1 cut(s)	2002
PciI	ACATGT	1 cut(s)	1077
PctI	GAATGC	3 cut(s)	522, 766, 1215
PflFI	GACNNNGTC	1 cut(s)	227
PflMI	CCANNNNNTGG	1 cut(s)	849
PfoI	TCCNGGA	1 cut(s)	890
PkrI	GCNGC	5 cut(s)	361, 424, 1189, 1574, 1685
PleI	GAGTC	2 cut(s)	356, 1986
PpsI	GAGTC	2 cut(s)	356, 1986
Ppu21I	YACGTR	3 cut(s)	500, 1165, 1854
PpuMI	RGGWCCY	1 cut(s)	120
PscI	ACATGT	1 cut(s)	1077
Psp124BI	GAGCTC	1 cut(s)	1503
Psp5II	RGGWCCY	1 cut(s)	120
Psp6I	CCWGG	3 cut(s)	576, 890, 1951
PspEI	GGTNACC	1 cut(s)	2078
PspFI	CCCAGC	1 cut(s)	1688
PspGI	CCWGG	3 cut(s)	576, 890, 1951
PspN4I	GGNNCC	3 cut(s)	121, 271, 1950
PspPI	GGNCC	2 cut(s)	120, 289
PspPPI	RGGWCCY	1 cut(s)	120
PspXI	VCTCGAGB	1 cut(s)	1270
PstI	CTGCAG	1 cut(s)	1208
PsuI	RGATCY	1 cut(s)	2043
PsyI	GACNNNGTC	1 cut(s)	227
RsaI	GTAC	7 cut(s)	470, 800, 950, 1163, 1167, 1202, 1315
RsaNI	GTAC	7 cut(s)	469, 799, 949, 1162, 1166, 1201, 1314
RseI	CAYNNNNRTG	1 cut(s)	1550
SacI	GAGCTC	1 cut(s)	1503
SaqAI	TTAA	7 cut(s)	38, 462, 996, 1118, 1259, 1766, 2054
SatI	GCNGC	5 cut(s)	360, 423, 1188, 1573, 1684
Sau3AI	GATC	3 cut(s)	414, 1735, 2043
Sau96I	GGNCC	2 cut(s)	120, 289
SchI	GAGTC	2 cut(s)	357, 1987
ScrFI	CCNGG	4 cut(s)	118, 578, 892, 1953
SduI	GDGCHC	3 cut(s)	994, 1360, 1503
SfaNI	GCATC	8 cut(s)	484, 577, 600, 793, 1410, 1503, 2001, 2023
SfcI	CTRYAG	2 cut(s)	58, 1204
Sfr274I	CTCGAG	1 cut(s)	1270
SfuI	TTCGAA	1 cut(s)	1041
SinI	GGWCC	2 cut(s)	120, 289
SlaI	CTCGAG	1 cut(s)	1270
SmiMI	CAYNNNNRTG	1 cut(s)	1550
SmlI	CTYRAG	1 cut(s)	1270
SmoI	CTYRAG	1 cut(s)	1270
SnaBI	TACGTA	2 cut(s)	1165, 1854
SpeI	ACTAGT	1 cut(s)	656
SphI	GCATGC	1 cut(s)	1269
SsiI	CCGC	9 cut(s)	722, 764, 978, 1092, 1566, 1684, 1894, 1909, 2018
SspMI	CTAG	3 cut(s)	657, 1251, 2091
SstI	GAGCTC	1 cut(s)	1503
StyD4I	CCNGG	4 cut(s)	116, 576, 890, 1951
StyI	CCWWGG	4 cut(s)	265, 672, 1643, 1884
TaaI	ACNGT	3 cut(s)	62, 473, 716
TaiI	ACGT	8 cut(s)	168, 228, 441, 502, 956, 1167, 1545, 1856
TaqI	TCGA	8 cut(s)	204, 298, 435, 913, 1041, 1271, 1480, 1734
TatI	WGTACW	3 cut(s)	468, 948, 1200
TauI	GCSGC	1 cut(s)	1686
Tru1I	TTAA	7 cut(s)	38, 462, 996, 1118, 1259, 1766, 2054
Tru9I	TTAA	7 cut(s)	38, 462, 996, 1118, 1259, 1766, 2054
TscAI	CASTG	3 cut(s)	361, 719, 1431
TseFI	GTSAC	2 cut(s)	980, 1543
TseI	GCWGC	4 cut(s)	359, 422, 1187, 1572
Tsp45I	GTSAC	2 cut(s)	980, 1543
TspGWI	ACGGA	2 cut(s)	20, 121
TspRI	CASTG	3 cut(s)	361, 719, 1431
Tth111I	GACNNNGTC	1 cut(s)	227
Van91I	CCANNNNNTGG	1 cut(s)	849
VpaK11BI	GGWCC	2 cut(s)	120, 289
XagI	CCTNNNNNAGG	1 cut(s)	1888
XapI	RAATTY	6 cut(s)	529, 708, 793, 838, 1387, 1628
XceI	RCATGY	3 cut(s)	922, 1081, 1269
XcmI	CCANNNNNNNNNTGG	3 cut(s)	223, 341, 374
XhoI	CTCGAG	1 cut(s)	1270
XspI	CTAG	3 cut(s)	657, 1251, 2091
Zsp2I	ATGCAT	2 cut(s)	924, 2016

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.