Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001580

Physical Location & Seq

Genomic Coordinates Reverse (-)

11682096 .. 11687475

Gene Structure 5380 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G011590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGCTGAGGATATTGAGGATGGGCCAATTGAAATAAAGGATGATTCTGATGAAGAAGATATGGGCAGTGAAGACCATGAACTGGGGGATGAAGACAAAAAAGTGGTAGACCTAGACCATGATGTGCCAATTGAAGTCCATGAAGTTAGGAAAACCACAGACATTGGGCCACATGCTGGAGGAGCAGAACAGGGGGCCCAAGCAACGTCAATAGTGACTGAACAGCCCAACAGAAATGGGATAACATCAACAAGCCATAAGGAAAAACAGAAAACAATGGATAATGGAAAAAAGAAACCAGCCCAGCCACCATCTGCTGAGGTTCAAGCTGATAATGTTGAACCTGAAGCTGTTCCAGCAAAGAATGTTCAAGAAGATGTTCCAGCCCCTGATCCAACTCTTGCTGAAGTGCCTAATGTGGTATCACAACAGTTCAGCGATGTTTTTCACCCAACACAGTTTGGTAACCAATTTAGGCGCCAAACTGTCAAAGTACTTCACAACACTGTTCAATTGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

173

Amino Acids

18.93

Weight (kDa)

4.5

Isoelectric Point (pI)

49.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680
fragaria_vesca	FvH4_7g03841 FvH4_7g03850
malus_domestica	MD02G1276700.v1.1
prunus_persica	Prupe.2G043400_v2.0.a1
pyrus_communis	pycom02g23700
rosa_chinensis	RchiOBHm_Chr1g0326811 RchiOBHm_Chr1g0326821 RchiOBHm_Chr1g0327271 RchiOBHm_Chr1g0327321
rosa_laevigata	RLG00000030002 RLG00000030005 RLG00000030054
rosa_multiflora	Rmu_sc0001021.1_g000002 Rmu_sc0003600.1_g000043 Rmu_sc0005038.1_g000015 Rmu_sc0010151.1_g000003 Rmu_sc0010151.1_g000004 Rmu_sc0020365.1_g000001
rosa_roxburghii	Rroxscaffold_2G00128000 Rroxscaffold_4G00322770 Rroxscaffold_4G00322870
rosa_rugosa	Rorug01G0064900 Rorug01G0065300 Rorug01G0065400 Rorug01G0065500 Rorug01G0065500
rosa_samantha	Rh1AG082500 Rh1AG083100 Rh1BG065600 Rh1BG065900 Rh1BG066000 Rh1CG080500 Rh1DG087500 Rh2AG148500 Rh2AG148600 Rh2BG154000 Rh2DG154200 Rh3CG329400
rosa_wichuraiana	Rw1G006500 Rw1G006530 Rw2G011590 Rw2G011600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	477
AccB7I	CCANNNNNTGG	2 cut(s)	82, 176
AccI	GTMKAC	1 cut(s)	108
AclWI	GGATC	1 cut(s)	386
AcuI	CTGAAG	2 cut(s)	366, 426
AcyI	GRCGYC	1 cut(s)	478
AfaI	GTAC	1 cut(s)	495
AfiI	CCNNNNNNNGG	2 cut(s)	82, 176
AgsI	TTSAA	6 cut(s)	32, 134, 326, 341, 371, 512
AluBI	AGCT	2 cut(s)	329, 350
AluI	AGCT	2 cut(s)	329, 350
AlwI	GGATC	1 cut(s)	386
AlwNI	CAGNNNCTG	1 cut(s)	389
AoxI	GGCC	3 cut(s)	23, 167, 195
ApaI	GGGCCC	1 cut(s)	199
Asp700I	GAANNNNTTC	2 cut(s)	351, 378
AspLEI	GCGC	1 cut(s)	480
AspS9I	GGNCC	4 cut(s)	23, 167, 195, 196
AsuHPI	GGTGA	1 cut(s)	440
BaeGI	GKGCMC	1 cut(s)	199
BanI	GGYRCC	1 cut(s)	477
BanII	GRGCYC	1 cut(s)	199
BbsI	GAAGAC	2 cut(s)	78, 99
BbvCI	CCTCAGC	2 cut(s)	6, 318
BccI	CCATC	2 cut(s)	14, 319
BfaI	CTAG	1 cut(s)	113
BfoI	RGCGCY	1 cut(s)	481
BmcAI	AGTACT	1 cut(s)	495
BmgT120I	GGNCC	4 cut(s)	23, 167, 195, 196
BmiI	GGNNCC	3 cut(s)	196, 197, 479
BmrI	ACTGGG	1 cut(s)	92
BmuI	ACTGGG	1 cut(s)	92
BpiI	GAAGAC	2 cut(s)	78, 99
BpmI	CTGGAG	1 cut(s)	198
Bpu10I	CCTNAGC	2 cut(s)	6, 318
BsaHI	GRCGYC	1 cut(s)	478
Bsc4I	CCNNNNNNNGG	2 cut(s)	82, 176
Bse1I	ACTGG	1 cut(s)	87
BseGI	GGATG	3 cut(s)	25, 46, 94
BseLI	CCNNNNNNNGG	2 cut(s)	82, 176
BseMII	CTCAG	1 cut(s)	309
BseNI	ACTGG	1 cut(s)	87
BseRI	GAGGAG	1 cut(s)	195
BseSI	GKGCMC	1 cut(s)	199
BseYI	CCCAGC	1 cut(s)	303
BshFI	GGCC	3 cut(s)	25, 169, 197
BshNI	GGYRCC	1 cut(s)	477
BslI	CCNNNNNNNGG	2 cut(s)	82, 176
BsnI	GGCC	3 cut(s)	25, 169, 197
Bsp120I	GGGCCC	1 cut(s)	195
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp143I	GATC	1 cut(s)	391
BspANI	GGCC	3 cut(s)	25, 169, 197
BspCNI	CTCAG	1 cut(s)	310
BspLI	GGNNCC	3 cut(s)	196, 197, 479
BspPI	GGATC	1 cut(s)	386
BspT107I	GGYRCC	1 cut(s)	477
BsrI	ACTGG	1 cut(s)	87
BssMI	GATC	1 cut(s)	391
BssNI	GRCGYC	1 cut(s)	478
Bst4CI	ACNGT	4 cut(s)	432, 459, 487, 508
BstACI	GRCGYC	1 cut(s)	478
BstDEI	CTNAG	2 cut(s)	6, 318
BstEII	GGTNACC	1 cut(s)	464
BstF5I	GGATG	3 cut(s)	25, 46, 94
BstH2I	RGCGCY	1 cut(s)	481
BstHHI	GCGC	1 cut(s)	480
BstKTI	GATC	1 cut(s)	394
BstMBI	GATC	1 cut(s)	391
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 356
BstNSI	RCATGY	1 cut(s)	176
BstPI	GGTNACC	1 cut(s)	464
BstSLI	GKGCMC	1 cut(s)	199
BstV2I	GAAGAC	2 cut(s)	78, 99
BsuRI	GGCC	3 cut(s)	25, 169, 197
BtgZI	GCGATG	1 cut(s)	453
BtsCI	GGATG	3 cut(s)	25, 46, 94
BtsI	GCAGTG	1 cut(s)	73
BtsIMutI	CAGTG	2 cut(s)	73, 504
CaiI	CAGNNNCTG	1 cut(s)	389
CfoI	GCGC	1 cut(s)	480
Cfr13I	GGNCC	4 cut(s)	23, 167, 195, 196
Csp6I	GTAC	1 cut(s)	494
CspCI	CAANNNNNGTGG	2 cut(s)	145, 180
CviAII	CATG	4 cut(s)	77, 119, 140, 173
CviQI	GTAC	1 cut(s)	494
DdeI	CTNAG	2 cut(s)	6, 318
DinI	GGCGCC	1 cut(s)	479
DpnI	GATC	1 cut(s)	393
DpnII	GATC	1 cut(s)	391
Eco24I	GRGCYC	1 cut(s)	199
Eco57I	CTGAAG	2 cut(s)	366, 426
Eco91I	GGTNACC	1 cut(s)	464
EcoO109I	RGGNCCY	1 cut(s)	195
EcoO65I	GGTNACC	1 cut(s)	464
EcoT38I	GRGCYC	1 cut(s)	199
EgeI	GGCGCC	1 cut(s)	479
EheI	GGCGCC	1 cut(s)	479
FaeI	CATG	4 cut(s)	80, 122, 143, 176
FaiI	YATR	6 cut(s)	62, 78, 120, 141, 174, 258
FatI	CATG	4 cut(s)	76, 118, 139, 172
FblI	GTMKAC	1 cut(s)	108
FokI	GGATG	3 cut(s)	32, 53, 101
FriOI	GRGCYC	1 cut(s)	199
FspBI	CTAG	1 cut(s)	113
GlaI	GCGC	1 cut(s)	479
GsaI	CCCAGC	1 cut(s)	307
GsuI	CTGGAG	1 cut(s)	198
HaeII	RGCGCY	1 cut(s)	481
HaeIII	GGCC	3 cut(s)	25, 169, 197
HhaI	GCGC	1 cut(s)	480
Hin1I	GRCGYC	1 cut(s)	478
Hin1II	CATG	4 cut(s)	80, 122, 143, 176
Hin6I	GCGC	1 cut(s)	478
HinP1I	GCGC	1 cut(s)	478
HinfI	GANTC	1 cut(s)	44
HphI	GGTGA	1 cut(s)	440
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	1 cut(s)	49
Hpy188III	TCNNGA	1 cut(s)	371
Hpy8I	GTNNAC	1 cut(s)	109
HpyCH4III	ACNGT	4 cut(s)	432, 459, 487, 508
HpyCH4IV	ACGT	1 cut(s)	206
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 356
HpyF3I	CTNAG	2 cut(s)	6, 318
HpySE526I	ACGT	1 cut(s)	206
Hsp92I	GRCGYC	1 cut(s)	478
Hsp92II	CATG	4 cut(s)	80, 122, 143, 176
HspAI	GCGC	1 cut(s)	478
KasI	GGCGCC	1 cut(s)	477
Kzo9I	GATC	1 cut(s)	391
LmnI	GCTCC	1 cut(s)	182
LpnPI	CCDG	9 cut(s)	68, 162, 176, 312, 317, 357, 369, 396, 402
MaeI	CTAG	1 cut(s)	113
MaeII	ACGT	1 cut(s)	206
MaeIII	GTNAC	2 cut(s)	214, 464
MalI	GATC	1 cut(s)	393
MboI	GATC	1 cut(s)	391
MboII	GAAGA	5 cut(s)	65, 68, 83, 104, 386
MfeI	CAATTG	3 cut(s)	27, 129, 512
MhlI	GDGCHC	1 cut(s)	199
MluCI	AATT	4 cut(s)	27, 129, 470, 512
Mly113I	GGCGCC	1 cut(s)	478
MmeI	TCCRAC	1 cut(s)	419
MnlI	CCTC	3 cut(s)	10, 173, 313
MroXI	GAANNNNTTC	2 cut(s)	351, 378
MunI	CAATTG	3 cut(s)	27, 129, 512
MwoI	GCNNNNNNNGC	2 cut(s)	182, 356
NarI	GGCGCC	1 cut(s)	478
NdeII	GATC	1 cut(s)	391
NlaIII	CATG	4 cut(s)	80, 122, 143, 176
NlaIV	GGNNCC	3 cut(s)	196, 197, 479
NmuCI	GTSAC	1 cut(s)	214
NspI	RCATGY	1 cut(s)	176
PdmI	GAANNNNTTC	2 cut(s)	351, 378
PfeI	GAWTC	1 cut(s)	44
PflMI	CCANNNNNTGG	2 cut(s)	82, 176
PluTI	GGCGCC	1 cut(s)	481
PspEI	GGTNACC	1 cut(s)	464
PspFI	CCCAGC	1 cut(s)	303
PspN4I	GGNNCC	3 cut(s)	196, 197, 479
PspOMI	GGGCCC	1 cut(s)	195
PspPI	GGNCC	4 cut(s)	23, 167, 195, 196
PstNI	CAGNNNCTG	1 cut(s)	389
RsaI	GTAC	1 cut(s)	495
RsaNI	GTAC	1 cut(s)	494
Sau3AI	GATC	1 cut(s)	391
Sau96I	GGNCC	4 cut(s)	23, 167, 195, 196
ScaI	AGTACT	1 cut(s)	495
SduI	GDGCHC	1 cut(s)	199
SetI	ASST	6 cut(s)	114, 209, 324, 331, 346, 352
SfoI	GGCGCC	1 cut(s)	479
Sse9I	AATT	4 cut(s)	27, 129, 470, 512
SspDI	GGCGCC	1 cut(s)	477
SspMI	CTAG	1 cut(s)	113
TaaI	ACNGT	4 cut(s)	432, 459, 487, 508
TaiI	ACGT	1 cut(s)	209
TasI	AATT	4 cut(s)	27, 129, 470, 512
TatI	WGTACW	1 cut(s)	493
TfiI	GAWTC	1 cut(s)	44
TscAI	CASTG	2 cut(s)	73, 511
TseFI	GTSAC	1 cut(s)	214
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	4 cut(s)	66, 93, 105, 156
TspRI	CASTG	2 cut(s)	73, 511
Van91I	CCANNNNNTGG	2 cut(s)	82, 176
XceI	RCATGY	1 cut(s)	176
XmiI	GTMKAC	1 cut(s)	108
XmnI	GAANNNNTTC	2 cut(s)	351, 378
XspI	CTAG	1 cut(s)	113
ZrmI	AGTACT	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.