Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020365.1

Orthogroup ID

OG0001580

Physical Location & Seq

Genomic Coordinates Reverse (-)

209 .. 628

Gene Structure 420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020365.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

atgctgctgcgtaggagtgaggagagggaagaagagaatgagtttgttttgaccgcggttcttagtggtttgggggttcctgaatttgttgatacaggcaagcagattcattgtcttgcggtgaaaaatgggctgatgtgtaatgtttctgttgggaatgcacttgtcacgatgtatgcgaaatgtggtagtttagatgatgcgcttagaacttttgagctgtctgacgataagaattctatcacatggtctgcgatgatatctggttttgcgcagagtggggattcggaaaaggctttggactcgttttcagacatgcatttttctgggatagtgccgactgagtttgcgtttggtggggtcattagtgcctgtagtgacattaatgctcttgaacaaggaaagcaagttgggatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

139

Amino Acids

14.92

Weight (kDa)

4.46

Isoelectric Point (pI)

48.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680
fragaria_vesca	FvH4_7g03841 FvH4_7g03850
malus_domestica	MD02G1276700.v1.1
prunus_persica	Prupe.2G043400_v2.0.a1
pyrus_communis	pycom02g23700
rosa_chinensis	RchiOBHm_Chr1g0326811 RchiOBHm_Chr1g0326821 RchiOBHm_Chr1g0327271 RchiOBHm_Chr1g0327321
rosa_laevigata	RLG00000030002 RLG00000030005 RLG00000030054
rosa_multiflora	Rmu_sc0001021.1_g000002 Rmu_sc0003600.1_g000043 Rmu_sc0005038.1_g000015 Rmu_sc0010151.1_g000003 Rmu_sc0010151.1_g000004 Rmu_sc0020365.1_g000001
rosa_roxburghii	Rroxscaffold_2G00128000 Rroxscaffold_4G00322770 Rroxscaffold_4G00322870
rosa_rugosa	Rorug01G0064900 Rorug01G0065300 Rorug01G0065400 Rorug01G0065500 Rorug01G0065500
rosa_samantha	Rh1AG082500 Rh1AG083100 Rh1BG065600 Rh1BG065900 Rh1BG066000 Rh1CG080500 Rh1DG087500 Rh2AG148500 Rh2AG148600 Rh2BG154000 Rh2DG154200 Rh3CG329400
rosa_wichuraiana	Rw1G006500 Rw1G006530 Rw2G011590 Rw2G011600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	273
AccII	CGCG	1 cut(s)	56
AciI	CCGC	3 cut(s)	54, 56, 119
AcsI	RAATTY	2 cut(s)	83, 235
AgsI	TTSAA	1 cut(s)	395
AluBI	AGCT	1 cut(s)	220
AluI	AGCT	1 cut(s)	220
ApeKI	GCWGC	2 cut(s)	4, 7
ApoI	RAATTY	2 cut(s)	83, 235
AseI	ATTAAT	1 cut(s)	384
AspLEI	GCGC	2 cut(s)	205, 274
AsuHPI	GGTGA	1 cut(s)	133
BfmI	CTRYAG	1 cut(s)	373
BisI	GCNGC	2 cut(s)	5, 8
BlsI	GCNGC	2 cut(s)	6, 9
BmiI	GGNNCC	1 cut(s)	78
BmsI	GCATC	1 cut(s)	190
BsaJI	CCNNGG	1 cut(s)	54
BseDI	CCNNGG	1 cut(s)	54
BseMII	CTCAG	1 cut(s)	333
BseRI	GAGGAG	1 cut(s)	35
Bsh1236I	CGCG	1 cut(s)	56
BsmI	GAATGC	1 cut(s)	163
BspACI	CCGC	3 cut(s)	54, 56, 119
BspCNI	CTCAG	1 cut(s)	334
BspFNI	CGCG	1 cut(s)	56
BspLI	GGNNCC	1 cut(s)	78
BssECI	CCNNGG	1 cut(s)	54
Bst6I	CTCTTC	1 cut(s)	27
BstC8I	GCNNGC	1 cut(s)	101
BstDEI	CTNAG	3 cut(s)	62, 206, 342
BstDSI	CCRYGG	1 cut(s)	54
BstFNI	CGCG	1 cut(s)	56
BstHHI	GCGC	2 cut(s)	205, 274
BstNSI	RCATGY	1 cut(s)	319
BstSFI	CTRYAG	1 cut(s)	373
BstUI	CGCG	1 cut(s)	56
BtgI	CCRYGG	1 cut(s)	54
BtgZI	GCGATG	1 cut(s)	269
Cac8I	GCNNGC	1 cut(s)	101
CfoI	GCGC	2 cut(s)	205, 274
Cfr42I	CCGCGG	1 cut(s)	57
CviAII	CATG	2 cut(s)	246, 316
CviJI	RGCY	3 cut(s)	133, 220, 296
CviKI_1	RGCY	3 cut(s)	133, 220, 296
DdeI	CTNAG	3 cut(s)	62, 206, 342
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
Eco32I	GATATC	1 cut(s)	261
EcoRI	GAATTC	1 cut(s)	235
EcoRV	GATATC	1 cut(s)	261
EcoT22I	ATGCAT	1 cut(s)	321
FaeI	CATG	2 cut(s)	249, 319
FaiI	YATR	3 cut(s)	177, 247, 317
FatI	CATG	2 cut(s)	245, 315
Fnu4HI	GCNGC	2 cut(s)	5, 8
Fsp4HI	GCNGC	2 cut(s)	5, 8
FspI	TGCGCA	1 cut(s)	273
GlaI	GCGC	2 cut(s)	204, 273
GluI	GCNGC	2 cut(s)	5, 8
HhaI	GCGC	2 cut(s)	205, 274
Hin1II	CATG	2 cut(s)	249, 319
Hin6I	GCGC	2 cut(s)	203, 272
HinP1I	GCGC	2 cut(s)	203, 272
HinfI	GANTC	3 cut(s)	106, 284, 302
HphI	GGTGA	1 cut(s)	133
Hpy188I	TCNGA	3 cut(s)	226, 289, 313
Hpy188III	TCNNGA	3 cut(s)	80, 169, 392
HpyCH4V	TGCA	2 cut(s)	161, 319
HpyF3I	CTNAG	3 cut(s)	62, 206, 342
Hsp92II	CATG	2 cut(s)	249, 319
HspAI	GCGC	2 cut(s)	203, 272
KspI	CCGCGG	1 cut(s)	57
LpnPI	CCDG	5 cut(s)	81, 93, 249, 312, 385
LweI	GCATC	1 cut(s)	190
MaeIII	GTNAC	2 cut(s)	166, 377
MboII	GAAGA	2 cut(s)	41, 44
MluCI	AATT	2 cut(s)	83, 235
MlyI	GAGTC	1 cut(s)	296
MnlI	CCTC	2 cut(s)	13, 18
Mph1103I	ATGCAT	1 cut(s)	321
MseI	TTAA	1 cut(s)	384
MspA1I	CMGCKG	1 cut(s)	56
Mva1269I	GAATGC	1 cut(s)	163
MvnI	CGCG	1 cut(s)	56
NlaIII	CATG	2 cut(s)	249, 319
NlaIV	GGNNCC	1 cut(s)	78
NmuCI	GTSAC	2 cut(s)	166, 377
NsbI	TGCGCA	1 cut(s)	273
NsiI	ATGCAT	1 cut(s)	321
NspI	RCATGY	1 cut(s)	319
PcsI	WCGNNNNNNNCGW	1 cut(s)	176
PctI	GAATGC	1 cut(s)	163
PfeI	GAWTC	2 cut(s)	106, 284
PkrI	GCNGC	2 cut(s)	6, 9
PleI	GAGTC	1 cut(s)	296
PpsI	GAGTC	1 cut(s)	296
PshBI	ATTAAT	1 cut(s)	384
PspN4I	GGNNCC	1 cut(s)	78
SacII	CCGCGG	1 cut(s)	57
SaqAI	TTAA	1 cut(s)	384
SatI	GCNGC	2 cut(s)	5, 8
SchI	GAGTC	1 cut(s)	296
SetI	ASST	1 cut(s)	222
SfaNI	GCATC	1 cut(s)	190
SfcI	CTRYAG	1 cut(s)	373
Sfr303I	CCGCGG	1 cut(s)	57
SgrBI	CCGCGG	1 cut(s)	57
Sse9I	AATT	2 cut(s)	83, 235
SsiI	CCGC	3 cut(s)	54, 56, 119
TasI	AATT	2 cut(s)	83, 235
TfiI	GAWTC	2 cut(s)	106, 284
Tru1I	TTAA	1 cut(s)	384
Tru9I	TTAA	1 cut(s)	384
TseFI	GTSAC	2 cut(s)	166, 377
TseI	GCWGC	2 cut(s)	4, 7
Tsp45I	GTSAC	2 cut(s)	166, 377
TspDTI	ATGAA	1 cut(s)	98
VspI	ATTAAT	1 cut(s)	384
XapI	RAATTY	2 cut(s)	83, 235
XceI	RCATGY	1 cut(s)	319
Zsp2I	ATGCAT	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.