Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001580

Physical Location & Seq

Genomic Coordinates Forward (+)

10577847 .. 10578690

Gene Structure 844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0065400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGCAACCTTGCAAAAATTCAAGCTCCTCGCCACTCAATGCTCCGTCGTCGCCGGAAGCCCCACGCGCAGCCCATCCGCCAGCCCCGTCATCCACCTCCGCCGCCGCAAAACCCTCAGAATGTTCCTCACCCGCCCCGACCGCCGCCGAATGCCTCGCCGGAGTACCTCCTCCGATGCTCCCAACGACGACGACGACGATCGCGAAAATGACGACCCGCCGGAGAGGAAGAACAGCAAGGAGCAGGCTCGGGTCCGCCGTAAGCTCAGGGACCTGTTCGTGTCGTCGCCGCCGCCGCTGGAGGATGGAAGGAGAGGCCGAGAGGTGGAAGATGGAGAGGAGCGAGGATTGCTGTCGGCGACGGACGTCGGCGGTGGCGTCGGTGGCTTGGCGAGGACTCGGCGCGGCGGGTTTTTAAGTCGACCCCTGACGGCGTCGTTTAGGTGTAGATTGCTGAAGAGGGCTTGGCGACCTGTGCTGGTTCCTATTCCCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

165

Amino Acids

18.61

Weight (kDa)

11.25

Isoelectric Point (pI)

83.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680
fragaria_vesca	FvH4_7g03841 FvH4_7g03850
malus_domestica	MD02G1276700.v1.1
prunus_persica	Prupe.2G043400_v2.0.a1
pyrus_communis	pycom02g23700
rosa_chinensis	RchiOBHm_Chr1g0326811 RchiOBHm_Chr1g0326821 RchiOBHm_Chr1g0327271 RchiOBHm_Chr1g0327321
rosa_laevigata	RLG00000030002 RLG00000030005 RLG00000030054
rosa_multiflora	Rmu_sc0001021.1_g000002 Rmu_sc0003600.1_g000043 Rmu_sc0005038.1_g000015 Rmu_sc0010151.1_g000003 Rmu_sc0010151.1_g000004 Rmu_sc0020365.1_g000001
rosa_roxburghii	Rroxscaffold_2G00128000 Rroxscaffold_4G00322770 Rroxscaffold_4G00322870
rosa_rugosa	Rorug01G0064900 Rorug01G0065300 Rorug01G0065400 Rorug01G0065500 Rorug01G0065500
rosa_samantha	Rh1AG082500 Rh1AG083100 Rh1BG065600 Rh1BG065900 Rh1BG066000 Rh1CG080500 Rh1DG087500 Rh2AG148500 Rh2AG148600 Rh2BG154000 Rh2DG154200 Rh3CG329400
rosa_wichuraiana	Rw1G006500 Rw1G006530 Rw2G011590 Rw2G011600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	369
AccI	GTMKAC	1 cut(s)	421
AccII	CGCG	3 cut(s)	67, 204, 405
AcsI	RAATTY	1 cut(s)	17
AcuI	CTGAAG	1 cut(s)	476
AcyI	GRCGYC	3 cut(s)	366, 378, 434
AfaI	GTAC	1 cut(s)	166
AfiI	CCNNNNNNNGG	1 cut(s)	325
AgsI	TTSAA	1 cut(s)	22
AluBI	AGCT	2 cut(s)	25, 265
AluI	AGCT	2 cut(s)	25, 265
Ama87I	CYCGRG	2 cut(s)	249, 491
AoxI	GGCC	1 cut(s)	316
ApeKI	GCWGC	1 cut(s)	69
ApoI	RAATTY	1 cut(s)	17
AspLEI	GCGC	2 cut(s)	69, 405
AspS9I	GGNCC	2 cut(s)	253, 271
AsuHPI	GGTGA	1 cut(s)	121
AvaI	CYCGRG	2 cut(s)	249, 491
AvaII	GGWCC	2 cut(s)	253, 271
BbvI	GCAGC	1 cut(s)	81
BccI	CCATC	3 cut(s)	82, 299, 326
BceAI	ACGGC	2 cut(s)	243, 447
BisI	GCNGC	8 cut(s)	70, 103, 106, 145, 290, 293, 296, 406
BlsI	GCNGC	8 cut(s)	71, 104, 107, 146, 291, 294, 297, 407
Bme18I	GGWCC	2 cut(s)	253, 271
BmeT110I	CYCGRG	2 cut(s)	249, 491
BmgT120I	GGNCC	2 cut(s)	253, 271
BmiI	GGNNCC	3 cut(s)	254, 272, 483
BmsI	GCATC	1 cut(s)	166
BoxI	GACNNNNGTC	1 cut(s)	365
BpmI	CTGGAG	1 cut(s)	320
Bpu10I	CCTNAGC	1 cut(s)	266
BsaHI	GRCGYC	3 cut(s)	366, 378, 434
Bsc4I	CCNNNNNNNGG	1 cut(s)	325
BseGI	GGATG	3 cut(s)	74, 90, 310
BseLI	CCNNNNNNNGG	1 cut(s)	325
BseMII	CTCAG	2 cut(s)	130, 280
BseRI	GAGGAG	3 cut(s)	17, 160, 353
BseXI	GCAGC	1 cut(s)	81
Bsh1236I	CGCG	3 cut(s)	67, 204, 405
Bsh1285I	CGRYCG	2 cut(s)	142, 202
BshFI	GGCC	1 cut(s)	318
BsiEI	CGRYCG	2 cut(s)	142, 202
BsiHKCI	CYCGRG	2 cut(s)	249, 491
BsiSI	CCGG	3 cut(s)	54, 160, 221
BslFI	GGGAC	1 cut(s)	284
BslI	CCNNNNNNNGG	1 cut(s)	325
BsmFI	GGGAC	1 cut(s)	284
BsmI	GAATGC	1 cut(s)	156
BsnI	GGCC	1 cut(s)	318
BsoBI	CYCGRG	2 cut(s)	249, 491
Bsp143I	GATC	1 cut(s)	199
Bsp68I	TCGCGA	1 cut(s)	204
BspANI	GGCC	1 cut(s)	318
BspCNI	CTCAG	2 cut(s)	129, 279
BspFNI	CGCG	3 cut(s)	67, 204, 405
BspLI	GGNNCC	3 cut(s)	254, 272, 483
BssMI	GATC	1 cut(s)	199
BssNI	GRCGYC	3 cut(s)	366, 378, 434
Bst6I	CTCTTC	1 cut(s)	452
BstACI	GRCGYC	3 cut(s)	366, 378, 434
BstC8I	GCNNGC	2 cut(s)	82, 246
BstDEI	CTNAG	2 cut(s)	116, 266
BstF5I	GGATG	3 cut(s)	74, 90, 310
BstFNI	CGCG	3 cut(s)	67, 204, 405
BstHHI	GCGC	2 cut(s)	69, 405
BstKTI	GATC	1 cut(s)	202
BstMBI	GATC	1 cut(s)	199
BstMCI	CGRYCG	2 cut(s)	142, 202
BstMWI	GCNNNNNNNGC	6 cut(s)	66, 141, 295, 349, 384, 475
BstPAI	GACNNNNGTC	1 cut(s)	365
BstUI	CGCG	3 cut(s)	67, 204, 405
BstV1I	GCAGC	1 cut(s)	81
BsuRI	GGCC	1 cut(s)	318
BtsCI	GGATG	3 cut(s)	74, 90, 310
BtuMI	TCGCGA	1 cut(s)	204
Cac8I	GCNNGC	2 cut(s)	82, 246
CfoI	GCGC	2 cut(s)	69, 405
Cfr13I	GGNCC	2 cut(s)	253, 271
CseI	GACGC	2 cut(s)	367, 423
Csp6I	GTAC	1 cut(s)	165
CviJI	RGCY	9 cut(s)	25, 60, 72, 84, 248, 265, 318, 387, 464
CviKI_1	RGCY	9 cut(s)	25, 60, 72, 84, 248, 265, 318, 387, 464
CviQI	GTAC	1 cut(s)	165
DdeI	CTNAG	2 cut(s)	116, 266
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
Eam1104I	CTCTTC	1 cut(s)	452
EarI	CTCTTC	1 cut(s)	452
EciI	GGCGGA	3 cut(s)	67, 89, 245
Eco47I	GGWCC	2 cut(s)	253, 271
Eco57I	CTGAAG	1 cut(s)	476
Eco88I	CYCGRG	2 cut(s)	249, 491
EcoO109I	RGGNCCY	1 cut(s)	271
FaqI	GGGAC	1 cut(s)	284
FauI	CCCGC	3 cut(s)	140, 225, 401
FblI	GTMKAC	1 cut(s)	421
Fnu4HI	GCNGC	8 cut(s)	70, 103, 106, 145, 290, 293, 296, 406
FokI	GGATG	3 cut(s)	61, 77, 317
Fsp4HI	GCNGC	8 cut(s)	70, 103, 106, 145, 290, 293, 296, 406
GlaI	GCGC	2 cut(s)	68, 404
GluI	GCNGC	8 cut(s)	70, 103, 106, 145, 290, 293, 296, 406
GsuI	CTGGAG	1 cut(s)	320
HaeIII	GGCC	1 cut(s)	318
HapII	CCGG	3 cut(s)	54, 160, 221
HgaI	GACGC	2 cut(s)	367, 423
HhaI	GCGC	2 cut(s)	69, 405
Hin1I	GRCGYC	3 cut(s)	366, 378, 434
Hin6I	GCGC	2 cut(s)	67, 403
HinP1I	GCGC	2 cut(s)	67, 403
HincII	GTYRAC	1 cut(s)	422
HindII	GTYRAC	1 cut(s)	422
HinfI	GANTC	1 cut(s)	397
HpaII	CCGG	3 cut(s)	54, 160, 221
HphI	GGTGA	1 cut(s)	121
Hpy166II	GTNNAC	1 cut(s)	422
Hpy188I	TCNGA	2 cut(s)	119, 175
Hpy188III	TCNNGA	2 cut(s)	203, 491
Hpy8I	GTNNAC	1 cut(s)	422
HpyAV	CCTTC	1 cut(s)	303
HpyCH4IV	ACGT	1 cut(s)	366
HpyCH4V	TGCA	1 cut(s)	13
HpyF10VI	GCNNNNNNNGC	6 cut(s)	66, 141, 295, 349, 384, 475
HpyF3I	CTNAG	2 cut(s)	116, 266
HpySE526I	ACGT	1 cut(s)	366
Hsp92I	GRCGYC	3 cut(s)	366, 378, 434
HspAI	GCGC	2 cut(s)	67, 403
Kzo9I	GATC	1 cut(s)	199
LmnI	GCTCC	5 cut(s)	30, 47, 184, 241, 340
Lsp1109I	GCAGC	1 cut(s)	81
LweI	GCATC	1 cut(s)	166
MaeII	ACGT	1 cut(s)	366
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MboII	GAAGA	3 cut(s)	241, 341, 469
MluCI	AATT	1 cut(s)	17
MlyI	GAGTC	1 cut(s)	391
MseI	TTAA	1 cut(s)	416
MspA1I	CMGCKG	1 cut(s)	298
MspI	CCGG	3 cut(s)	54, 160, 221
Mva1269I	GAATGC	1 cut(s)	156
MvnI	CGCG	3 cut(s)	67, 204, 405
MwoI	GCNNNNNNNGC	6 cut(s)	66, 141, 295, 349, 384, 475
NdeII	GATC	1 cut(s)	199
NlaIV	GGNNCC	3 cut(s)	254, 272, 483
NmeAIII	GCCGAG	2 cut(s)	344, 379
NruI	TCGCGA	1 cut(s)	204
PcsI	WCGNNNNNNNCGW	5 cut(s)	192, 195, 201, 256, 375
PctI	GAATGC	1 cut(s)	156
PflFI	GACNNNGTC	1 cut(s)	433
PkrI	GCNGC	8 cut(s)	71, 104, 107, 146, 291, 294, 297, 407
Ple19I	CGATCG	1 cut(s)	202
PleI	GAGTC	1 cut(s)	391
PpsI	GAGTC	1 cut(s)	391
PpuMI	RGGWCCY	1 cut(s)	271
PshAI	GACNNNNGTC	1 cut(s)	365
Psp5II	RGGWCCY	1 cut(s)	271
PspN4I	GGNNCC	3 cut(s)	254, 272, 483
PspPI	GGNCC	2 cut(s)	253, 271
PspPPI	RGGWCCY	1 cut(s)	271
PsyI	GACNNNGTC	1 cut(s)	433
PvuI	CGATCG	1 cut(s)	202
RruI	TCGCGA	1 cut(s)	204
RsaI	GTAC	1 cut(s)	166
RsaNI	GTAC	1 cut(s)	165
SalI	GTCGAC	1 cut(s)	420
SaqAI	TTAA	1 cut(s)	416
SatI	GCNGC	8 cut(s)	70, 103, 106, 145, 290, 293, 296, 406
Sau3AI	GATC	1 cut(s)	199
Sau96I	GGNCC	2 cut(s)	253, 271
SchI	GAGTC	1 cut(s)	391
SfaNI	GCATC	1 cut(s)	166
SinI	GGWCC	2 cut(s)	253, 271
Sse9I	AATT	1 cut(s)	17
TaiI	ACGT	1 cut(s)	369
TaqI	TCGA	1 cut(s)	421
TasI	AATT	1 cut(s)	17
TauI	GCSGC	7 cut(s)	105, 108, 147, 292, 295, 298, 408
Tru1I	TTAA	1 cut(s)	416
Tru9I	TTAA	1 cut(s)	416
TseI	GCWGC	1 cut(s)	69
TspGWI	ACGGA	2 cut(s)	34, 377
Tth111I	GACNNNGTC	1 cut(s)	433
VpaK11BI	GGWCC	2 cut(s)	253, 271
XapI	RAATTY	1 cut(s)	17
XmiI	GTMKAC	1 cut(s)	421
ZraI	GACGTC	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.