RLG00000030002

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
53160731 .. 53162469
1739 bp
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UTR
Exon/CDS
Intron
RLM00000030002

Sequence Viewer

Length: 1569 bp
ATGATTTCTGGGTATGCAATGCACCAGTTGGGTGGAAATGTGTTAGAGGTTTTTATACTGATGCGTAGGAGTGAGGAGAGGGAAGAAGAGAATGAGTTTGTTCTGACCGCGGTTCTTAGTGGTTTGGCGGTTCCTGAATTTGTTGATACAGGCAAGCAGATTCATTGCCTTGCGGTGAAAAATGGGCTGATGTGTAATGTTTCTGTTGGGAATGCGCTTGTCACGATGTATGCGAAATGTGGGAGTTTAGATTATGCGCTTAGAATTTTTGAGCTGTCTGGTGATAAGAATTCTATCACATGGTCTGCGATGATATCTGGTTTTGCGCAGAGTAGGGATTCGCAAAAGGCTTTGGACTTGTTTTCAGACATGCATTTTTCTGGGATAATGCCGACGGAGTTTGCGTTTGGTGGGGTCATCAGTGCCTGTAGTGACATCAATGCTCTTGAACAAGGAAAGCAAGTGCATAGTTATCTGCTCAAGTTGGGATTTGAATTCCAATTATATATAATTTCAGCTTTGGTTGACATGTATGGCAAATGTGGTAGCGTTAGTGATGCTCGGAAAGGGTTTGATTGTATAAAAGAGCCTGATATTGTTCTTTGGAGTTCTATGATCGGAGGGTATGTACAAAATGGGGAGAATGAAGCTGCTTTGAGTTTATACTGTAGAATGCAGAGGGAGGGATTTTTGCCCAATGAACTCACTATGGCCAGTCTCCTGAAAGCATGTTCAAGCCTATGTGCTTTTGAACAAGGAAAGCAAATCCATGTGAGTACCATTAAGTATGGATTCAGTCTTGAATTTCCAATTGGAAGTTCTCTTTTCACTATGTATGCAAAGTGTGGGAATTTGGAAGATGGGAAGTTAGTGTTTAGGAGAATGCCTACGAGAGATGTAGTGTCTTGGAATGCAATGATATCTGGGCTTTCACAAAATGGGCAGGGTAACGAAGCTCTAGAGCTCTTTGAGGAGATGCGATTGGGTGGCACAGAGCCAGATTACGTTACATTTGTGAATGTTCTCTCTGCTTGCAGCCATATGGGGTCTGTGGAGAGAGGATGGATTTATTTCAAGATGATGTCTAATGAATTTGGCATTTCCCCAAGGGTGGAGCATTATGCTTGCATGGTTGATGTCCTGAGCCGTGCTGGGAAGTTAGATGAAGCCAAAGATTTCATAGAGTCAGCAACTATTGATCATGGCATCTGTTTATGGCGTATTTTATTAAGTGCTTGTCGAAATTATCGGAATTATGAATTGGGAGCATATGCCGGAGAGAAGCTAATGGAGTTAGGTTCACTAGAATCACAGGCTTACGTGCTATTGTCAAGCATCTATACTTCCCTGGGTTGGCGGGAAGATGTTGAGCGGGTAAGGAGGATGATGAAACTTCGAGGGGTGAGTAAGAAGCCTGGCTGTAGCTGGATTGAGTTGAAGAGTCAGGTTCATGTGTTTGTTGTTGGTGATGTGATGCATCCACAGATTGATAGTATTGGTGTTGAGATCCGAAGGTTAATCAAGCATATGAAGGATGAAGGATACCAACCTTCCTCTACCACTTTTTGA

Protein Analysis

523

Amino Acids

58.22

Weight (kDa)

5.59

Isoelectric Point (pI)

44.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 96 - 144 7.5e-09 PPR repeat family
PPR PF01535 99 - 129 2.2e-06 PPR repeat
PPR_2 PF13041 197 - 245 7.4e-12 PPR repeat family
PPR PF01535 200 - 230 2.9e-07 PPR repeat
PPR_2 PF13041 298 - 346 2.1e-13 PPR repeat family
PPR_1 PF12854 299 - 327 1e-06 PPR repeat
PPR PF01535 301 - 327 3e-09 PPR repeat
E_motif PF20431 416 - 478 2.2e-18 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 327
AccBSI CCGCTC 1 cut(s) 1372
AccII CGCG 1 cut(s) 110
AciI CCGC 6 cut(s) 108, 110, 128, 173, 1357, 1372
AclWI GGATC 1 cut(s) 1501
AcoI YGGCCR 1 cut(s) 711
AcsI RAATTY 7 cut(s) 137, 264, 289, 494, 803, 850, 1091
AfaI GTAC 2 cut(s) 630, 778
AfiI CCNNNNNNNGG 2 cut(s) 1111, 1353
AflIII ACRYGT 1 cut(s) 528
AgsI TTSAA 7 cut(s) 449, 494, 735, 752, 803, 1075, 1438
AjnI CCWGG 2 cut(s) 1347, 1414
AjuI GAANNNNNNNTTGG 6 cut(s) 795, 802, 827, 834, 1244, 1276
AluBI AGCT 7 cut(s) 274, 518, 650, 956, 964, 1285, 1425
AluI AGCT 7 cut(s) 274, 518, 650, 956, 964, 1285, 1425
Alw21I GWGCWC 1 cut(s) 966
Alw26I GTCTC 1 cut(s) 722
AlwI GGATC 1 cut(s) 1501
AlwNI CAGNNNCTG 1 cut(s) 426
AoxI GGCC 1 cut(s) 711
ApeKI GCWGC 2 cut(s) 650, 1035
ApoI RAATTY 7 cut(s) 137, 264, 289, 494, 803, 850, 1091
AspLEI GCGC 3 cut(s) 217, 259, 328
AsuHPI GGTGA 4 cut(s) 187, 293, 1414, 1478
BalI TGGCCA 1 cut(s) 713
BanII GRGCYC 1 cut(s) 966
Bbv12I GWGCWC 1 cut(s) 966
BbvI GCAGC 2 cut(s) 637, 1047
BccI CCATC 2 cut(s) 854, 1056
BceAI ACGGC 1 cut(s) 1131
BciT130I CCWGG 2 cut(s) 1349, 1416
BciVI GTATCC 1 cut(s) 1535
BclI TGATCA 1 cut(s) 1198
BcoDI GTCTC 1 cut(s) 722
BfaI CTAG 2 cut(s) 959, 1304
BfmI CTRYAG 3 cut(s) 427, 667, 1420
BfuI GTATCC 1 cut(s) 1535
BisI GCNGC 2 cut(s) 651, 1036
BlsI GCNGC 2 cut(s) 652, 1037
Bme1390I CCNGG 2 cut(s) 1349, 1416
BmiI GGNNCC 1 cut(s) 132
BmrFI CCNGG 2 cut(s) 1349, 1416
BmsI GCATC 7 cut(s) 51, 547, 966, 1215, 1344, 1464, 1486
Bpu10I CCTNAGC 1 cut(s) 1142
BpuEI CTTGAG 1 cut(s) 464
BsaAI YACGTR 1 cut(s) 1321
BsaJI CCNNGG 4 cut(s) 108, 1106, 1347, 1348
BsaXI ACNNNNNCTCC 4 cut(s) 389, 419, 612, 642
Bsc4I CCNNNNNNNGG 2 cut(s) 1111, 1353
Bse1I ACTGG 2 cut(s) 25, 714
Bse3DI GCAATG 3 cut(s) 24, 163, 921
BseBI CCWGG 2 cut(s) 1349, 1416
BseDI CCNNGG 4 cut(s) 108, 1106, 1347, 1348
BseGI GGATG 4 cut(s) 1067, 1389, 1477, 1540
BseLI CCNNNNNNNGG 2 cut(s) 1111, 1353
BseMI GCAATG 3 cut(s) 24, 163, 921
BseMII CTCAG 1 cut(s) 1133
BseNI ACTGG 2 cut(s) 25, 714
BseRI GAGGAG 2 cut(s) 89, 986
BseXI GCAGC 2 cut(s) 637, 1047
BseYI CCCAGC 1 cut(s) 1151
Bsh1236I CGCG 1 cut(s) 110
BshFI GGCC 1 cut(s) 713
BsiHKAI GWGCWC 1 cut(s) 966
BsiSI CCGG 1 cut(s) 1275
BslI CCNNNNNNNGG 2 cut(s) 1111, 1353
BsmAI GTCTC 1 cut(s) 722
BsmI GAATGC 4 cut(s) 217, 678, 888, 916
BsnI GGCC 1 cut(s) 713
Bsp1286I GDGCHC 1 cut(s) 966
Bsp1407I TGTACA 1 cut(s) 628
Bsp143I GATC 3 cut(s) 615, 1198, 1506
BspACI CCGC 6 cut(s) 108, 110, 128, 173, 1357, 1372
BspANI GGCC 1 cut(s) 713
BspCNI CTCAG 1 cut(s) 1134
BspFNI CGCG 1 cut(s) 110
BspLI GGNNCC 1 cut(s) 132
BspPI GGATC 1 cut(s) 1501
BsrBI CCGCTC 1 cut(s) 1372
BsrDI GCAATG 3 cut(s) 24, 163, 921
BsrGI TGTACA 1 cut(s) 628
BsrI ACTGG 2 cut(s) 25, 714
BssECI CCNNGG 4 cut(s) 108, 1106, 1347, 1348
BssMI GATC 3 cut(s) 615, 1198, 1506
BssT1I CCWWGG 1 cut(s) 1106
Bst2UI CCWGG 2 cut(s) 1349, 1416
Bst4CI ACNGT 1 cut(s) 668
Bst6I CTCTTC 2 cut(s) 81, 1433
BstAUI TGTACA 1 cut(s) 628
BstBAI YACGTR 1 cut(s) 1321
BstC8I GCNNGC 3 cut(s) 155, 1033, 1126
BstDEI CTNAG 3 cut(s) 116, 260, 1142
BstDSI CCRYGG 1 cut(s) 108
BstF5I GGATG 4 cut(s) 1067, 1389, 1477, 1540
BstFNI CGCG 1 cut(s) 110
BstHHI GCGC 3 cut(s) 217, 259, 328
BstKTI GATC 3 cut(s) 618, 1201, 1509
BstMAI GTCTC 1 cut(s) 722
BstMBI GATC 3 cut(s) 615, 1198, 1506
BstNI CCWGG 2 cut(s) 1349, 1416
BstNSI RCATGY 3 cut(s) 373, 532, 732
BstSCI CCNGG 2 cut(s) 1347, 1414
BstSFI CTRYAG 3 cut(s) 427, 667, 1420
BstUI CGCG 1 cut(s) 110
BstV1I GCAGC 2 cut(s) 637, 1047
BstX2I RGATCY 1 cut(s) 1506
BstXI CCANNNNNNTGG 1 cut(s) 32
BstYI RGATCY 1 cut(s) 1506
BsuI GTATCC 1 cut(s) 1535
BsuRI GGCC 1 cut(s) 713
BtgI CCRYGG 1 cut(s) 108
BtgZI GCGATG 1 cut(s) 323
BtsCI GGATG 4 cut(s) 1067, 1389, 1477, 1540
BtsIMutI CAGTG 1 cut(s) 427
Cac8I GCNNGC 3 cut(s) 155, 1033, 1126
CaiI CAGNNNCTG 1 cut(s) 426
CfoI GCGC 3 cut(s) 217, 259, 328
Cfr42I CCGCGG 1 cut(s) 111
Csp6I GTAC 2 cut(s) 629, 777
CviAII CATG 8 cut(s) 300, 370, 529, 729, 770, 1129, 1202, 1451
CviQI GTAC 2 cut(s) 629, 777
DdeI CTNAG 3 cut(s) 116, 260, 1142
DpnI GATC 3 cut(s) 617, 1200, 1508
DpnII GATC 3 cut(s) 615, 1198, 1506
EaeI YGGCCR 1 cut(s) 711
Eam1104I CTCTTC 2 cut(s) 81, 1433
EarI CTCTTC 2 cut(s) 81, 1433
Ecl136II GAGCTC 1 cut(s) 964
Eco130I CCWWGG 1 cut(s) 1106
Eco24I GRGCYC 1 cut(s) 966
Eco32I GATATC 2 cut(s) 315, 921
Eco53kI GAGCTC 1 cut(s) 964
EcoICRI GAGCTC 1 cut(s) 964
EcoRI GAATTC 2 cut(s) 289, 494
EcoRII CCWGG 2 cut(s) 1347, 1414
EcoRV GATATC 2 cut(s) 315, 921
EcoT14I CCWWGG 1 cut(s) 1106
EcoT22I ATGCAT 2 cut(s) 375, 1479
EcoT38I GRGCYC 1 cut(s) 966
ErhI CCWWGG 1 cut(s) 1106
FaeI CATG 8 cut(s) 303, 373, 532, 732, 773, 1132, 1205, 1454
FatI CATG 8 cut(s) 299, 369, 528, 728, 769, 1128, 1201, 1450
FauI CCCGC 2 cut(s) 1350, 1365
FauNDI CATATG 3 cut(s) 1041, 1270, 1527
FbaI TGATCA 1 cut(s) 1198
Fnu4HI GCNGC 2 cut(s) 651, 1036
FokI GGATG 4 cut(s) 1074, 1396, 1464, 1547
FriOI GRGCYC 1 cut(s) 966
Fsp4HI GCNGC 2 cut(s) 651, 1036
FspBI CTAG 2 cut(s) 959, 1304
FspI TGCGCA 1 cut(s) 327
GlaI GCGC 3 cut(s) 216, 258, 327
GluI GCNGC 2 cut(s) 651, 1036
GsaI CCCAGC 1 cut(s) 1155
HaeIII GGCC 1 cut(s) 713
HapII CCGG 1 cut(s) 1275
HhaI GCGC 3 cut(s) 217, 259, 328
Hin1II CATG 8 cut(s) 303, 373, 532, 732, 773, 1132, 1205, 1454
Hin6I GCGC 3 cut(s) 215, 257, 326
HinP1I GCGC 3 cut(s) 215, 257, 326
HincII GTYRAC 1 cut(s) 526
HindII GTYRAC 1 cut(s) 526
HinfI GANTC 6 cut(s) 160, 338, 792, 1184, 1307, 1441
HpaII CCGG 1 cut(s) 1275
HphI GGTGA 4 cut(s) 187, 293, 1414, 1478
Hpy166II GTNNAC 2 cut(s) 526, 1301
Hpy188I TCNGA 6 cut(s) 105, 367, 564, 620, 1251, 1511
Hpy188III TCNNGA 8 cut(s) 134, 223, 446, 721, 800, 959, 1075, 1141
Hpy8I GTNNAC 2 cut(s) 526, 1301
Hpy99I CGWCG 1 cut(s) 397
HpyAV CCTTC 4 cut(s) 1506, 1525, 1532, 1560
HpyCH4III ACNGT 1 cut(s) 668
HpyCH4IV ACGT 2 cut(s) 1005, 1320
HpyF3I CTNAG 3 cut(s) 116, 260, 1142
HpySE526I ACGT 2 cut(s) 1005, 1320
Hsp92II CATG 8 cut(s) 303, 373, 532, 732, 773, 1132, 1205, 1454
HspAI GCGC 3 cut(s) 215, 257, 326
Ksp22I TGATCA 1 cut(s) 1198
KspI CCGCGG 1 cut(s) 111
Kzo9I GATC 3 cut(s) 615, 1198, 1506
LmnI GCTCC 2 cut(s) 1114, 1265
Lsp1109I GCAGC 2 cut(s) 637, 1047
LweI GCATC 7 cut(s) 51, 547, 966, 1215, 1344, 1464, 1486
MaeI CTAG 2 cut(s) 959, 1304
MaeII ACGT 2 cut(s) 1005, 1320
MaeIII GTNAC 4 cut(s) 220, 431, 947, 1006
MalI GATC 3 cut(s) 617, 1200, 1508
MbiI CCGCTC 1 cut(s) 1372
MboI GATC 3 cut(s) 615, 1198, 1506
MboII GAAGA 5 cut(s) 95, 98, 869, 1373, 1450
MfeI CAATTG 1 cut(s) 810
MflI RGATCY 1 cut(s) 1506
MhlI GDGCHC 1 cut(s) 966
MlsI TGGCCA 1 cut(s) 713
MluNI TGGCCA 1 cut(s) 713
MlyI GAGTC 2 cut(s) 1193, 1450
Mox20I TGGCCA 1 cut(s) 713
Mph1103I ATGCAT 2 cut(s) 375, 1479
MscI TGGCCA 1 cut(s) 713
MseI TTAA 3 cut(s) 783, 1229, 1517
Msp20I TGGCCA 1 cut(s) 713
MspA1I CMGCKG 1 cut(s) 110
MspI CCGG 1 cut(s) 1275
MspR9I CCNGG 2 cut(s) 1349, 1416
MunI CAATTG 1 cut(s) 810
Mva1269I GAATGC 4 cut(s) 217, 678, 888, 916
MvaI CCWGG 2 cut(s) 1349, 1416
MvnI CGCG 1 cut(s) 110
NdeI CATATG 3 cut(s) 1041, 1270, 1527
NdeII GATC 3 cut(s) 615, 1198, 1506
NlaIII CATG 8 cut(s) 303, 373, 532, 732, 773, 1132, 1205, 1454
NlaIV GGNNCC 1 cut(s) 132
NmuCI GTSAC 2 cut(s) 220, 431
NsbI TGCGCA 1 cut(s) 327
NsiI ATGCAT 2 cut(s) 375, 1479
NspI RCATGY 3 cut(s) 373, 532, 732
PasI CCCWGGG 1 cut(s) 1348
PciI ACATGT 1 cut(s) 528
PcsI WCGNNNNNNNCGW 2 cut(s) 230, 401
PctI GAATGC 4 cut(s) 217, 678, 888, 916
PfeI GAWTC 4 cut(s) 160, 338, 792, 1307
PkrI GCNGC 2 cut(s) 652, 1037
PleI GAGTC 2 cut(s) 1192, 1449
PpsI GAGTC 2 cut(s) 1192, 1449
Ppu21I YACGTR 1 cut(s) 1321
PscI ACATGT 1 cut(s) 528
Psp124BI GAGCTC 1 cut(s) 966
Psp6I CCWGG 2 cut(s) 1347, 1414
PspFI CCCAGC 1 cut(s) 1151
PspGI CCWGG 2 cut(s) 1347, 1414
PspN4I GGNNCC 1 cut(s) 132
PstNI CAGNNNCTG 1 cut(s) 426
PsuI RGATCY 1 cut(s) 1506
RsaI GTAC 2 cut(s) 630, 778
RsaNI GTAC 2 cut(s) 629, 777
SacI GAGCTC 1 cut(s) 966
SacII CCGCGG 1 cut(s) 111
SaqAI TTAA 3 cut(s) 783, 1229, 1517
SatI GCNGC 2 cut(s) 651, 1036
Sau3AI GATC 3 cut(s) 615, 1198, 1506
SchI GAGTC 2 cut(s) 1193, 1450
ScrFI CCNGG 2 cut(s) 1349, 1416
SduI GDGCHC 1 cut(s) 966
SfaNI GCATC 7 cut(s) 51, 547, 966, 1215, 1344, 1464, 1486
SfcI CTRYAG 3 cut(s) 427, 667, 1420
Sfr303I CCGCGG 1 cut(s) 111
SgrBI CCGCGG 1 cut(s) 111
SmlI CTYRAG 1 cut(s) 479
SmoI CTYRAG 1 cut(s) 479
SsiI CCGC 6 cut(s) 108, 110, 128, 173, 1357, 1372
SspMI CTAG 2 cut(s) 959, 1304
SstI GAGCTC 1 cut(s) 966
StyD4I CCNGG 2 cut(s) 1347, 1414
StyI CCWWGG 1 cut(s) 1106
TaaI ACNGT 1 cut(s) 668
TaiI ACGT 2 cut(s) 1008, 1323
TaqI TCGA 2 cut(s) 1240, 1396
TatI WGTACW 1 cut(s) 628
TfiI GAWTC 4 cut(s) 160, 338, 792, 1307
Tru1I TTAA 3 cut(s) 783, 1229, 1517
Tru9I TTAA 3 cut(s) 783, 1229, 1517
TscAI CASTG 1 cut(s) 427
TseFI GTSAC 2 cut(s) 220, 431
TseI GCWGC 2 cut(s) 650, 1035
Tsp45I GTSAC 2 cut(s) 220, 431
TspGWI ACGGA 1 cut(s) 410
TspRI CASTG 1 cut(s) 427
XapI RAATTY 7 cut(s) 137, 264, 289, 494, 803, 850, 1091
XbaI TCTAGA 1 cut(s) 958
XceI RCATGY 3 cut(s) 373, 532, 732
XspI CTAG 2 cut(s) 959, 1304
Zsp2I ATGCAT 2 cut(s) 375, 1479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.