Rorug01G0065500

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
10594633 .. 10649796
55164 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0065500.1

Sequence Viewer

Length: 1557 bp
ATGTCTGTCCCTGATTTAGCGTCTGACCTAGTTCAAACCCCGAATATTACTGCCACTCCTGATGTTACTCGATGTTCAGCTAATTTTTCCCCGGGCATTTGGGGTGATCATTTTCTGTCATATGCTTCCACGGAAGCGGCAGACAGTAAAAGTATGAACCATGTCAAAGACTTGAAGGAAGAACTGAAGAGGATGATAATGGCTCCAGCGAAAAGGCCTTCACAAAAGTTGCACTTCATCAACCACATTCAGCGCTTAGGTGTCTCATACCATTTCGAAGATGAGATTGACCAAATTTTGCAGCAAGTTCACCGAGAAGAAGAATATGATGATCTTTGCACCACTGCTCTAAGCTTTCGATTGCTTAGACAACATGGTTATAACGCTTCATGCAATATGTTTAACAAGTTCAAGGATGGTGATGGGAAATTTAAAGAATCGCTTGTTAATGATGTAGTCGGCCTGTTAAGCTTGTATGAAGCCTCGCATCTTCAGATGCCTGGGGAGGATTTACTAAACGAGGCACTAACCTTCTCCACCGCTCATCTCATGTCTGCAGCACACCGTTTAAGCTCATCATCTCAGCTTTCAAAACAAGTAACTCATGCCTTGTATCAGCCCCTTTGGAAGGGCATGCCAAGGATTGAAGCGAGGCATCACTTGTCTCTTTACCAAGAAGATGATGCACATAACGAAACTCTTCTGAATTTTGCAAAGTTCGATTTTAACACTGTGCAGAAAGTCCATCAGAAAGAACTGAGCGAAATTACGAGGTGGTGGAAGGATTTCGACTTTGCAAACAAGCTACCTTTTGCAAGAGACAGGGTAGTTGAGGCCTATTTTTGGGCTTTGGCAGTCTACTTTGAGCCGGAATATTTCTTTGCCCGGATGGTGTCAGCCAAAGCTACTGCTATAATTACAGTCATTGACGACATATACGATGTGCATGGCACGTATGAAGAATTAGAGAACTTTACTGAAGCTATTGAGAGGTGGAACATTTCTGTCGTTGATCAACTACCAGATTATATGAAAGTGTGTTATGAAGTGCTGTTGAATTTCTTCACCGAACTTGAAGAAAGTCTAGCGAATAAGGGAATCTTATACCGCCTCCACTATGCGAGAGAAGCATTTAAGGTTCAAGTCAGAGGTTACTTCCAGGAAGCGAAATGGTTGAAACAAAAGTACACACCAACAATGGAAGAGTATATGTCTGTGGAACGCAATACATCCTTCTTCATGTTGGCAGTAGTGTCATTTGTTGGAATGGGAGTTATTGTTACAAAAGACTCCATGGATTGGGTTTTCAATGAACCTAAGATTTTAAAGGCCACATCTATAATTGGCAGACTCATGAATGACCTAGTAGGCCATAAGTTTGAGCAAAAGAGAGAACACATTGCATCAGCAGTGGAATGCTACATGAAGCAATGTGGTGTCACAGAAGAAGAAGCAGAAGTCGAGAAAACTAAACAAGTGAATGACGCATGGCAAGACATAAACGAAGAGTGGCTCGATGCCACCTCTATCCCTAGGCCCCGGCCCTACTCTTGCTGA

Protein Analysis

518

Amino Acids

60.05

Weight (kDa)

5.39

Isoelectric Point (pI)

48.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 33 - 204 2.1e-58 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 261 - 499 3.2e-93 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 301 - 499 3.7e-55 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 381
AccB7I CCANNNNNTGG 1 cut(s) 1299
AccBSI CCGCTC 1 cut(s) 542
AccI GTMKAC 1 cut(s) 858
AciI CCGC 3 cut(s) 137, 540, 1108
AcsI RAATTY 4 cut(s) 294, 428, 706, 1057
AcuI CTGAAG 3 cut(s) 206, 476, 999
AfaI GTAC 1 cut(s) 1187
AfeI AGCGCT 1 cut(s) 254
AfiI CCNNNNNNNGG 3 cut(s) 628, 843, 1299
AjnI CCWGG 2 cut(s) 499, 1158
AluBI AGCT 8 cut(s) 80, 354, 471, 573, 586, 805, 905, 983
AluI AGCT 8 cut(s) 80, 354, 471, 573, 586, 805, 905, 983
Alw26I GTCTC 3 cut(s) 268, 669, 813
Ama87I CYCGRG 1 cut(s) 91
Aor51HI AGCGCT 1 cut(s) 254
AoxI GGCC 7 cut(s) 215, 460, 834, 1329, 1369, 1535, 1541
ApeKI GCWGC 2 cut(s) 301, 557
ApoI RAATTY 4 cut(s) 294, 428, 706, 1057
Asp700I GAANNNNTTC 3 cut(s) 699, 785, 1061
AspA2I CCTAGG 1 cut(s) 1532
AspLEI GCGC 1 cut(s) 255
AspS9I GGNCC 2 cut(s) 1536, 1542
AsuC2I CCSGG 4 cut(s) 92, 93, 886, 1540
AsuHPI GGTGA 4 cut(s) 116, 302, 431, 1057
AsuII TTCGAA 1 cut(s) 276
AvaI CYCGRG 1 cut(s) 91
AvrII CCTAGG 1 cut(s) 1532
BbvI GCAGC 2 cut(s) 313, 569
BccI CCATC 4 cut(s) 410, 416, 753, 883
BciT130I CCWGG 2 cut(s) 501, 1160
BclI TGATCA 2 cut(s) 106, 1012
BcnI CCSGG 4 cut(s) 92, 93, 886, 1540
BcoDI GTCTC 3 cut(s) 268, 669, 813
BfaI CTAG 4 cut(s) 29, 1085, 1364, 1533
BfmI CTRYAG 1 cut(s) 555
BfoI RGCGCY 1 cut(s) 256
BisI GCNGC 3 cut(s) 138, 302, 558
BlnI CCTAGG 1 cut(s) 1532
BlsI GCNGC 3 cut(s) 139, 303, 559
Bme1390I CCNGG 6 cut(s) 92, 93, 501, 886, 1160, 1540
BmeT110I CYCGRG 1 cut(s) 91
BmgT120I GGNCC 2 cut(s) 1536, 1542
BmiI GGNNCC 2 cut(s) 204, 1538
BmrFI CCNGG 6 cut(s) 92, 93, 501, 886, 1160, 1540
BmsI GCATC 6 cut(s) 486, 496, 664, 673, 1412, 1507
BpmI CTGGAG 1 cut(s) 189
Bpu10I CCTNAGC 1 cut(s) 256
Bpu14I TTCGAA 1 cut(s) 276
BpuMI CCSGG 4 cut(s) 92, 93, 886, 1540
BsaAI YACGTR 1 cut(s) 954
BsaJI CCNNGG 8 cut(s) 90, 91, 129, 500, 638, 1293, 1532, 1538
BsaXI ACNNNNNCTCC 4 cut(s) 40, 70, 1263, 1293
Bsc4I CCNNNNNNNGG 3 cut(s) 628, 843, 1299
Bse3DI GCAATG 2 cut(s) 1398, 1436
BseBI CCWGG 2 cut(s) 501, 1160
BseDI CCNNGG 8 cut(s) 90, 91, 129, 500, 638, 1293, 1532, 1538
BseGI GGATG 4 cut(s) 198, 421, 894, 1229
BseLI CCNNNNNNNGG 3 cut(s) 628, 843, 1299
BseMI GCAATG 2 cut(s) 1398, 1436
BseMII CTCAG 2 cut(s) 596, 749
BseXI GCAGC 2 cut(s) 313, 569
BsgI GTGCAG 1 cut(s) 755
BshFI GGCC 7 cut(s) 217, 462, 836, 1331, 1371, 1537, 1543
BsiHKCI CYCGRG 1 cut(s) 91
BsiSI CCGG 4 cut(s) 92, 869, 886, 1540
BslI CCNNNNNNNGG 3 cut(s) 628, 843, 1299
BsmAI GTCTC 3 cut(s) 268, 669, 813
BsmI GAATGC 1 cut(s) 1421
BsnI GGCC 7 cut(s) 217, 462, 836, 1331, 1371, 1537, 1543
BsoBI CYCGRG 1 cut(s) 91
Bsp119I TTCGAA 1 cut(s) 276
Bsp143I GATC 3 cut(s) 106, 331, 1012
Bsp19I CCATGG 1 cut(s) 1293
BspACI CCGC 3 cut(s) 137, 540, 1108
BspANI GGCC 7 cut(s) 217, 462, 836, 1331, 1371, 1537, 1543
BspCNI CTCAG 2 cut(s) 595, 750
BspHI TCATGA 1 cut(s) 1353
BspLI GGNNCC 2 cut(s) 204, 1538
BspMAI CTGCAG 1 cut(s) 559
BspT104I TTCGAA 1 cut(s) 276
BsrBI CCGCTC 1 cut(s) 542
BsrDI GCAATG 2 cut(s) 1398, 1436
BssECI CCNNGG 8 cut(s) 90, 91, 129, 500, 638, 1293, 1532, 1538
BssMI GATC 3 cut(s) 106, 331, 1012
BssT1I CCWWGG 3 cut(s) 638, 1293, 1532
Bst2UI CCWGG 2 cut(s) 501, 1160
Bst4CI ACNGT 4 cut(s) 146, 566, 733, 922
Bst6I CTCTTC 4 cut(s) 182, 705, 1197, 1500
BstBAI YACGTR 1 cut(s) 954
BstBI TTCGAA 1 cut(s) 276
BstC8I GCNNGC 1 cut(s) 635
BstDEI CTNAG 6 cut(s) 256, 350, 365, 582, 758, 1317
BstDSI CCRYGG 2 cut(s) 129, 1293
BstENI CCTNNNNNAGG 1 cut(s) 626
BstF5I GGATG 4 cut(s) 198, 421, 894, 1229
BstH2I RGCGCY 1 cut(s) 256
BstHHI GCGC 1 cut(s) 255
BstKTI GATC 3 cut(s) 109, 334, 1015
BstMAI GTCTC 3 cut(s) 268, 669, 813
BstMBI GATC 3 cut(s) 106, 331, 1012
BstMWI GCNNNNNNNGC 2 cut(s) 468, 1127
BstNI CCWGG 2 cut(s) 501, 1160
BstNSI RCATGY 1 cut(s) 637
BstSCI CCNGG 6 cut(s) 90, 91, 499, 884, 1158, 1538
BstSFI CTRYAG 1 cut(s) 555
BstV1I GCAGC 2 cut(s) 313, 569
BsuRI GGCC 7 cut(s) 217, 462, 836, 1331, 1371, 1537, 1543
BtgI CCRYGG 2 cut(s) 129, 1293
BtsCI GGATG 4 cut(s) 198, 421, 894, 1229
BtsI GCAGTG 2 cut(s) 342, 1416
BtsIMutI CAGTG 3 cut(s) 342, 729, 1416
Cac8I GCNNGC 1 cut(s) 635
CciI TCATGA 1 cut(s) 1353
CfoI GCGC 1 cut(s) 255
Cfr13I GGNCC 2 cut(s) 1536, 1542
Cfr9I CCCGGG 1 cut(s) 91
CseI GACGC 2 cut(s) 9, 1493
Csp6I GTAC 1 cut(s) 1186
CviQI GTAC 1 cut(s) 1186
DdeI CTNAG 6 cut(s) 256, 350, 365, 582, 758, 1317
DpnI GATC 3 cut(s) 108, 333, 1014
DpnII GATC 3 cut(s) 106, 331, 1012
DraI TTTAAA 2 cut(s) 433, 1326
Eam1104I CTCTTC 4 cut(s) 182, 705, 1197, 1500
EarI CTCTTC 4 cut(s) 182, 705, 1197, 1500
Eco130I CCWWGG 3 cut(s) 638, 1293, 1532
Eco147I AGGCCT 2 cut(s) 217, 836
Eco47III AGCGCT 1 cut(s) 254
Eco57I CTGAAG 3 cut(s) 206, 476, 999
Eco88I CYCGRG 1 cut(s) 91
EcoNI CCTNNNNNAGG 1 cut(s) 626
EcoO109I RGGNCCY 1 cut(s) 1536
EcoRII CCWGG 2 cut(s) 499, 1158
EcoT14I CCWWGG 3 cut(s) 638, 1293, 1532
ErhI CCWWGG 3 cut(s) 638, 1293, 1532
FalI AAGNNNNNCTT 6 cut(s) 218, 250, 426, 458, 1085, 1117
FauNDI CATATG 1 cut(s) 121
FbaI TGATCA 2 cut(s) 106, 1012
FblI GTMKAC 1 cut(s) 858
Fnu4HI GCNGC 3 cut(s) 138, 302, 558
FokI GGATG 4 cut(s) 205, 428, 901, 1216
Fsp4HI GCNGC 3 cut(s) 138, 302, 558
FspBI CTAG 4 cut(s) 29, 1085, 1364, 1533
GlaI GCGC 1 cut(s) 254
GluI GCNGC 3 cut(s) 138, 302, 558
GsuI CTGGAG 1 cut(s) 189
HaeII RGCGCY 1 cut(s) 256
HaeIII GGCC 7 cut(s) 217, 462, 836, 1331, 1371, 1537, 1543
HapII CCGG 4 cut(s) 92, 869, 886, 1540
HgaI GACGC 2 cut(s) 9, 1493
HhaI GCGC 1 cut(s) 255
Hin6I GCGC 1 cut(s) 253
HinP1I GCGC 1 cut(s) 253
HindIII AAGCTT 2 cut(s) 352, 469
HinfI GANTC 4 cut(s) 437, 1098, 1289, 1350
HpaII CCGG 4 cut(s) 92, 869, 886, 1540
HphI GGTGA 4 cut(s) 116, 302, 431, 1057
Hpy166II GTNNAC 3 cut(s) 310, 859, 1188
Hpy188I TCNGA 5 cut(s) 25, 495, 705, 750, 1148
Hpy188III TCNNGA 3 cut(s) 59, 1354, 1462
Hpy8I GTNNAC 3 cut(s) 310, 859, 1188
HpyAV CCTTC 6 cut(s) 169, 228, 541, 622, 775, 1243
HpyCH4III ACNGT 4 cut(s) 146, 566, 733, 922
HpyCH4IV ACGT 1 cut(s) 953
HpyF10VI GCNNNNNNNGC 2 cut(s) 468, 1127
HpyF3I CTNAG 6 cut(s) 256, 350, 365, 582, 758, 1317
HpySE526I ACGT 1 cut(s) 953
HspAI GCGC 1 cut(s) 253
Ksp22I TGATCA 2 cut(s) 106, 1012
Kzo9I GATC 3 cut(s) 106, 331, 1012
LmnI GCTCC 1 cut(s) 208
Lsp1109I GCAGC 2 cut(s) 313, 569
LweI GCATC 6 cut(s) 486, 496, 664, 673, 1412, 1507
MaeI CTAG 4 cut(s) 29, 1085, 1364, 1533
MaeII ACGT 1 cut(s) 953
MaeIII GTNAC 5 cut(s) 64, 598, 1151, 1279, 1438
MalI GATC 3 cut(s) 108, 333, 1014
MbiI CCGCTC 1 cut(s) 542
MboI GATC 3 cut(s) 106, 331, 1012
MluCI AATT 9 cut(s) 82, 294, 428, 706, 765, 915, 962, 1057, 1341
MlyI GAGTC 2 cut(s) 1283, 1344
MmeI TCCRAC 1 cut(s) 1243
MroXI GAANNNNTTC 3 cut(s) 699, 785, 1061
MseI TTAA 8 cut(s) 402, 432, 447, 467, 569, 726, 1134, 1325
MspI CCGG 4 cut(s) 92, 869, 886, 1540
MspR9I CCNGG 6 cut(s) 92, 93, 501, 886, 1160, 1540
Mva1269I GAATGC 1 cut(s) 1421
MvaI CCWGG 2 cut(s) 501, 1160
MwoI GCNNNNNNNGC 2 cut(s) 468, 1127
NciI CCSGG 4 cut(s) 92, 93, 886, 1540
NcoI CCATGG 1 cut(s) 1293
NdeI CATATG 1 cut(s) 121
NdeII GATC 3 cut(s) 106, 331, 1012
NlaIV GGNNCC 2 cut(s) 204, 1538
NmuCI GTSAC 1 cut(s) 1438
NspI RCATGY 1 cut(s) 637
NspV TTCGAA 1 cut(s) 276
PaeI GCATGC 1 cut(s) 637
PagI TCATGA 1 cut(s) 1353
PceI AGGCCT 2 cut(s) 217, 836
PcsI WCGNNNNNNNCGW 1 cut(s) 936
PctI GAATGC 1 cut(s) 1421
PdmI GAANNNNTTC 3 cut(s) 699, 785, 1061
PfeI GAWTC 2 cut(s) 437, 1098
PflMI CCANNNNNTGG 1 cut(s) 1299
PfoI TCCNGGA 1 cut(s) 1158
PkrI GCNGC 3 cut(s) 139, 303, 559
PleI GAGTC 2 cut(s) 1283, 1344
PpsI GAGTC 2 cut(s) 1283, 1344
Ppu21I YACGTR 1 cut(s) 954
PsiI TTATAA 1 cut(s) 381
Psp6I CCWGG 2 cut(s) 499, 1158
PspGI CCWGG 2 cut(s) 499, 1158
PspN4I GGNNCC 2 cut(s) 204, 1538
PspPI GGNCC 2 cut(s) 1536, 1542
PstI CTGCAG 1 cut(s) 559
RsaI GTAC 1 cut(s) 1187
RsaNI GTAC 1 cut(s) 1186
SaqAI TTAA 8 cut(s) 402, 432, 447, 467, 569, 726, 1134, 1325
SatI GCNGC 3 cut(s) 138, 302, 558
Sau3AI GATC 3 cut(s) 106, 331, 1012
Sau96I GGNCC 2 cut(s) 1536, 1542
SchI GAGTC 2 cut(s) 1283, 1344
ScrFI CCNGG 6 cut(s) 92, 93, 501, 886, 1160, 1540
SfaNI GCATC 6 cut(s) 486, 496, 664, 673, 1412, 1507
SfcI CTRYAG 1 cut(s) 555
SfuI TTCGAA 1 cut(s) 276
SmaI CCCGGG 1 cut(s) 93
SphI GCATGC 1 cut(s) 637
Sse9I AATT 9 cut(s) 82, 294, 428, 706, 765, 915, 962, 1057, 1341
SseBI AGGCCT 2 cut(s) 217, 836
SsiI CCGC 3 cut(s) 137, 540, 1108
SspI AATATT 2 cut(s) 46, 875
SspMI CTAG 4 cut(s) 29, 1085, 1364, 1533
StuI AGGCCT 2 cut(s) 217, 836
StyD4I CCNGG 6 cut(s) 90, 91, 499, 884, 1158, 1538
StyI CCWWGG 3 cut(s) 638, 1293, 1532
TaaI ACNGT 4 cut(s) 146, 566, 733, 922
TaiI ACGT 1 cut(s) 956
TaqI TCGA 7 cut(s) 70, 276, 358, 720, 789, 1461, 1515
TasI AATT 9 cut(s) 82, 294, 428, 706, 765, 915, 962, 1057, 1341
TatI WGTACW 1 cut(s) 1185
TauI GCSGC 1 cut(s) 140
TfiI GAWTC 2 cut(s) 437, 1098
Tru1I TTAA 8 cut(s) 402, 432, 447, 467, 569, 726, 1134, 1325
Tru9I TTAA 8 cut(s) 402, 432, 447, 467, 569, 726, 1134, 1325
TscAI CASTG 3 cut(s) 349, 736, 1416
TseFI GTSAC 1 cut(s) 1438
TseI GCWGC 2 cut(s) 301, 557
Tsp45I GTSAC 1 cut(s) 1438
TspGWI ACGGA 1 cut(s) 146
TspMI CCCGGG 1 cut(s) 91
TspRI CASTG 3 cut(s) 349, 736, 1416
Van91I CCANNNNNTGG 1 cut(s) 1299
XagI CCTNNNNNAGG 1 cut(s) 626
XapI RAATTY 4 cut(s) 294, 428, 706, 1057
XceI RCATGY 1 cut(s) 637
XmaI CCCGGG 1 cut(s) 91
XmaJI CCTAGG 1 cut(s) 1532
XmiI GTMKAC 1 cut(s) 858
XmnI GAANNNNTTC 3 cut(s) 699, 785, 1061
XspI CTAG 4 cut(s) 29, 1085, 1364, 1533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.