Rroxscaffold_2G00128000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001580
Physical Location & Seq
Forward (+)
63579008 .. 63584498
5491 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00128000.1

Sequence Viewer

Length: 390 bp
ATGCATTATGCCCACAGAACTGAAGCAGTACGTGTAGGTTTTCCGCTGATTTTGCCGCAGGGGAATGGGCAATCAGAAAGGGCCAGCAGCATAATGCGGAAAAAGAATGAGGCCGAGAAGGGGAAAAAGAAGGCAGCTTTGCAAAGGGAAGTAGAAGGTCGGTGTGAAGAAGATGTTCTTGTACCTAGAAAAGAAAAGGCAAGCCTAGGAGGTATGCAACTAGGTTCGGAGGGGAGAGTTCTAATGCAGGAGCTACCGGGGCCGAAGTCTTATCAAGCTCCATCAAGCTCTGGATTTAAACAAAGGAGATTCAAATCTCTTGCACATAGGAAACCAAAGCATGCCAAGCAGCCACAAGCTCCTTTAACCGATGATGGTTTATCCGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.32

Weight (kDa)

10.0

Isoelectric Point (pI)

56.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 44, 56, 97
AcuI CTGAAG 1 cut(s) 42
AfaI GTAC 2 cut(s) 30, 183
AfiI CCNNNNNNNGG 1 cut(s) 120
AflIII ACRYGT 1 cut(s) 31
AgsI TTSAA 1 cut(s) 313
AluBI AGCT 5 cut(s) 137, 253, 278, 288, 359
AluI AGCT 5 cut(s) 137, 253, 278, 288, 359
AoxI GGCC 3 cut(s) 81, 111, 260
ApeKI GCWGC 3 cut(s) 87, 134, 349
Asp700I GAANNNNTTC 1 cut(s) 174
AspA2I CCTAGG 1 cut(s) 205
AspS9I GGNCC 2 cut(s) 81, 260
AsuC2I CCSGG 1 cut(s) 258
AvrII CCTAGG 1 cut(s) 205
BbvI GCAGC 3 cut(s) 99, 146, 361
BccI CCATC 2 cut(s) 289, 368
BcnI CCSGG 1 cut(s) 258
BfaI CTAG 3 cut(s) 186, 206, 221
BisI GCNGC 4 cut(s) 56, 88, 135, 350
BlnI CCTAGG 1 cut(s) 205
BlsI GCNGC 4 cut(s) 57, 89, 136, 351
Bme1390I CCNGG 1 cut(s) 258
BmgT120I GGNCC 2 cut(s) 81, 260
BmiI GGNNCC 1 cut(s) 261
BmrFI CCNGG 1 cut(s) 258
BpuMI CCSGG 1 cut(s) 258
BsaAI YACGTR 1 cut(s) 32
BsaBI GATNNNNATC 1 cut(s) 313
BsaJI CCNNGG 2 cut(s) 205, 257
Bsc4I CCNNNNNNNGG 1 cut(s) 120
Bse8I GATNNNNATC 1 cut(s) 313
BseDI CCNNGG 2 cut(s) 205, 257
BseJI GATNNNNATC 1 cut(s) 313
BseLI CCNNNNNNNGG 1 cut(s) 120
BseXI GCAGC 3 cut(s) 99, 146, 361
BshFI GGCC 3 cut(s) 83, 113, 262
BsiSI CCGG 1 cut(s) 257
BslI CCNNNNNNNGG 1 cut(s) 120
BsnI GGCC 3 cut(s) 83, 113, 262
BspACI CCGC 3 cut(s) 44, 56, 97
BspANI GGCC 3 cut(s) 83, 113, 262
BspLI GGNNCC 1 cut(s) 261
BssECI CCNNGG 2 cut(s) 205, 257
BssT1I CCWWGG 1 cut(s) 205
BstBAI YACGTR 1 cut(s) 32
BstC8I GCNNGC 3 cut(s) 85, 202, 342
BstMWI GCNNNNNNNGC 3 cut(s) 52, 259, 346
BstNSI RCATGY 1 cut(s) 344
BstSCI CCNGG 1 cut(s) 256
BstV1I GCAGC 3 cut(s) 99, 146, 361
BsuRI GGCC 3 cut(s) 83, 113, 262
Cac8I GCNNGC 3 cut(s) 85, 202, 342
Cfr13I GGNCC 2 cut(s) 81, 260
Csp6I GTAC 2 cut(s) 29, 182
CviAII CATG 1 cut(s) 341
CviQI GTAC 2 cut(s) 29, 182
DraI TTTAAA 1 cut(s) 298
Eco130I CCWWGG 1 cut(s) 205
Eco57I CTGAAG 1 cut(s) 42
EcoT14I CCWWGG 1 cut(s) 205
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 205
FaeI CATG 1 cut(s) 344
FaiI YATR 5 cut(s) 9, 92, 215, 327, 342
FalI AAGNNNNNCTT 2 cut(s) 162, 194
FatI CATG 1 cut(s) 340
Fnu4HI GCNGC 4 cut(s) 56, 88, 135, 350
Fsp4HI GCNGC 4 cut(s) 56, 88, 135, 350
FspBI CTAG 3 cut(s) 186, 206, 221
GluI GCNGC 4 cut(s) 56, 88, 135, 350
HaeIII GGCC 3 cut(s) 83, 113, 262
HapII CCGG 1 cut(s) 257
Hin1II CATG 1 cut(s) 344
HinfI GANTC 1 cut(s) 309
HpaII CCGG 1 cut(s) 257
Hpy188I TCNGA 3 cut(s) 76, 229, 385
Hpy188III TCNNGA 1 cut(s) 291
HpyAV CCTTC 3 cut(s) 112, 124, 149
HpyCH4IV ACGT 1 cut(s) 31
HpyCH4V TGCA 5 cut(s) 4, 142, 217, 247, 323
HpyF10VI GCNNNNNNNGC 3 cut(s) 52, 259, 346
HpySE526I ACGT 1 cut(s) 31
Hsp92II CATG 1 cut(s) 344
LmnI GCTCC 3 cut(s) 250, 283, 364
LpnPI CCDG 5 cut(s) 44, 97, 233, 270, 276
Lsp1109I GCAGC 3 cut(s) 99, 146, 361
MaeI CTAG 3 cut(s) 186, 206, 221
MaeII ACGT 1 cut(s) 31
MboII GAAGA 2 cut(s) 179, 182
MnlI CCTC 3 cut(s) 103, 203, 223
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 174
MseI TTAA 2 cut(s) 297, 365
MspA1I CMGCKG 1 cut(s) 46
MspI CCGG 1 cut(s) 257
MspR9I CCNGG 1 cut(s) 258
MwoI GCNNNNNNNGC 3 cut(s) 52, 259, 346
NciI CCSGG 1 cut(s) 258
NlaIII CATG 1 cut(s) 344
NlaIV GGNNCC 1 cut(s) 261
NmeAIII GCCGAG 1 cut(s) 139
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 344
PaeI GCATGC 1 cut(s) 344
PdmI GAANNNNTTC 1 cut(s) 174
PfeI GAWTC 1 cut(s) 309
PkrI GCNGC 4 cut(s) 57, 89, 136, 351
Ppu21I YACGTR 1 cut(s) 32
PspN4I GGNNCC 1 cut(s) 261
PspPI GGNCC 2 cut(s) 81, 260
RsaI GTAC 2 cut(s) 30, 183
RsaNI GTAC 2 cut(s) 29, 182
SaqAI TTAA 2 cut(s) 297, 365
SatI GCNGC 4 cut(s) 56, 88, 135, 350
Sau96I GGNCC 2 cut(s) 81, 260
ScrFI CCNGG 1 cut(s) 258
SphI GCATGC 1 cut(s) 344
SsiI CCGC 3 cut(s) 44, 56, 97
SspMI CTAG 3 cut(s) 186, 206, 221
StyD4I CCNGG 1 cut(s) 256
StyI CCWWGG 1 cut(s) 205
TaiI ACGT 1 cut(s) 34
TauI GCSGC 1 cut(s) 58
TfiI GAWTC 1 cut(s) 309
Tru1I TTAA 2 cut(s) 297, 365
Tru9I TTAA 2 cut(s) 297, 365
TseI GCWGC 3 cut(s) 87, 134, 349
XceI RCATGY 1 cut(s) 344
XmaJI CCTAGG 1 cut(s) 205
XmnI GAANNNNTTC 1 cut(s) 174
XspI CTAG 3 cut(s) 186, 206, 221
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.