Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001580

Physical Location & Seq

Genomic Coordinates Forward (+)

53478169 .. 53480286

Gene Structure 2118 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00322870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2118 bp

ATGAATCTTTCATCTCTTTCTTTTCACTTCCGATCCTTGATCACAACACTCATCCACTACAGTCGTCAAAAGCACCTCCAAAACGGCAAAGCTGTCCACGCCCACATCATCAAAACCGGGTCCTCTTCTTCCGTCTATGTCGCCAACAGCCTCGTCAACCTGTACGTCAAATGTGGAGACTTACCCACAGCCAAGCTCGTGTTCGAGGCCACACCCAACAAGGACGTGGTCTCATGGAACAATCTAATCAATGCCTGCTCTCACCTTGGCTCTTCCTCACTTGTTATGGACCTTTTTCGACGCATGAGGGCAGACAACACCAACCCAAATGCCCACACTTTTGCTGGAGTCTTCACTGCTGCTTCCCATGAAGCGTCTGACGTTTTTGGGGGGCAGAAGATTCATGCTCTTGCGATCAAAGCAGCGAGCTTTTTCGACGTGTTTGTTGGGAGTTCTCTACTGAATATGTACTGTAAAATGGGTCTTGTGGGGGATGCACGTAAGGTGTTTGATAGAATGCCTGAGAGGAATTCGGTTTCGTGGGCCACTATGATTTCGGGGTATGCAATGCAACGCCTGGCTGGAGATGCGTTGGAGCTTTTCGGGTTGATGCGTAGAAGTGAGGAGAATGAGGGAGAGAATGAGTTTATTTTGACTAGTGTTGTGAGTGCATTGGCTGTTCCTGAGTTTGTTGATACGGGGAAGCAAATTCACTGTCTTGCGGTGAAAAATGGGCTGATGAGTTTTGTTTCTGTTAGGAATGCGGTTGTTACAATGTATGCGAAATGTGGAAATTTGGACGATGCGCTTAGAACATTTGAATTGTGTGGTGATAAGAATTCCATCACATGGTCTGCGATGATATGTGGTTTTGCACAGAGTGGGGATTCCCGGAAGGCTTTGAACTTGCTTCGAGACATGCATTTTTCGGGGATAAAGCCAAGCCAGTACACGTTTGTTGGAGTCATCAATGCTTGCGGTGACATTGGTGCTCTTAAAGAAGGACAACAAGTGCATGGTTATTTGTTGAAGATGGGATTCGAATTGCAGGTATATATAATGTCAGCTTTGGTTGACATGTATGCCAAATGTGGTAGAGTTAGTGATGCTCGTAATGGGTTTGATTATTTAAAAGAACCTGATGTTGTTCTTTGGACTTCTATGATTGGAGGGTATGTACAAAATGGGGAGTATGAAGCTGCTTTGGGTTGGTACTGCAGAATGCACAAGGAGGGAATCACGCCCAATAAACTTACTATGGCCAGTGTCTTAAAAGCATGCTCGAGCTTAAGTTCTTTTGAACAAGGAAAGCAAATCCATGCCCGTACAATCAAGTATGGATTCAGTCTGGAAGTTCCAATTGGAAGTGCTCTTTCTACCATGTATGCAAAATGTGGGAATTTGGAAGATGGGAATCTTGTATTTAGGAGGATGCCGGTGAGGGATGTAGTAGCTTGGAATGGAATAATCTCTGGCCTTTCGCAAAATGGTCAAGGGACAGAAGCTTTAGAGCTCTTTGAGGAGATGCGAATGGGGGATACAAAGCCGGATTACGTCACATTTGTGAATGTCCTCTCCGCTTGCAGCCATATGGGATTTGTTGAGAGAGGATGGATTTATTTCAAGATGATGTATAATGAATTTGGCATAGCCCCAAGGGTGGAGCATTATGCTTGCATGGTTGATGTCCTGAGCCGCGCTGGGAGGTTAGATGAAGCCAAAGACTTCATAGAATCAGCAACTATCGATCATGGCATTTTTTTATGGCGTATTTTATTAAGTGCTTGTCGGAACTATCGGAATTATGAATTGGGAGCTTATGCTGGAGAGAAACTTATTGAGTTAGGAACACCGGAATCATCTACATATGTGTTGTTGTCAAGCATATATACTTCCTTGGGCAGGCGGGAAGATGTAGAGCGGGTAAGGAGGATGATGAATCTCAGAGGGGTGAGTAAGGAGCCTGGGTGTAGCTGGATTGAGTTGAAGAGTCAGGTTCATGTGTTTGTTGTTCATGATGAGATGCATCCGCATATTGAAAATATATATGCTGTGATCCGACGGTTAAAAAAGCATATGAAGGATGAAGGTTACCATCCTTCTAGTATCACCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

705

Amino Acids

78.59

Weight (kDa)

7.84

Isoelectric Point (pI)

44.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	74 - 120	5e-08	PPR repeat family
PPR_2	PF13041	279 - 326	1.7e-10	PPR repeat family
PPR	PF01535	282 - 312	8.7e-06	PPR repeat
PPR_2	PF13041	380 - 428	8.7e-12	PPR repeat family
PPR	PF01535	383 - 413	2.1e-07	PPR repeat
PPR_2	PF13041	481 - 529	9.9e-11	PPR repeat family
PPR	PF01535	484 - 510	1.2e-06	PPR repeat
E_motif	PF20431	599 - 661	2.8e-18	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680
fragaria_vesca	FvH4_7g03841 FvH4_7g03850
malus_domestica	MD02G1276700.v1.1
prunus_persica	Prupe.2G043400_v2.0.a1
pyrus_communis	pycom02g23700
rosa_chinensis	RchiOBHm_Chr1g0326811 RchiOBHm_Chr1g0326821 RchiOBHm_Chr1g0327271 RchiOBHm_Chr1g0327321
rosa_laevigata	RLG00000030002 RLG00000030005 RLG00000030054
rosa_multiflora	Rmu_sc0001021.1_g000002 Rmu_sc0003600.1_g000043 Rmu_sc0005038.1_g000015 Rmu_sc0010151.1_g000003 Rmu_sc0010151.1_g000004 Rmu_sc0020365.1_g000001
rosa_roxburghii	Rroxscaffold_2G00128000 Rroxscaffold_4G00322770 Rroxscaffold_4G00322870
rosa_rugosa	Rorug01G0064900 Rorug01G0065300 Rorug01G0065400 Rorug01G0065500 Rorug01G0065500
rosa_samantha	Rh1AG082500 Rh1AG083100 Rh1BG065600 Rh1BG065900 Rh1BG066000 Rh1CG080500 Rh1DG087500 Rh2AG148500 Rh2AG148600 Rh2BG154000 Rh2DG154200 Rh3CG329400
rosa_wichuraiana	Rw1G006500 Rw1G006530 Rw2G011590 Rw2G011600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1039
AccB7I	CCANNNNNTGG	1 cut(s)	849
AccBSI	CCGCTC	1 cut(s)	1921
AccII	CGCG	1 cut(s)	1698
AciI	CCGC	8 cut(s)	722, 764, 978, 1578, 1696, 1906, 1921, 2030
AclWI	GGATC	2 cut(s)	27, 2050
AcoI	YGGCCR	1 cut(s)	1260
AcsI	RAATTY	6 cut(s)	529, 708, 793, 838, 1399, 1640
AdeI	CACNNNGTG	1 cut(s)	881
AfaI	GTAC	6 cut(s)	164, 470, 950, 1179, 1214, 1327
AfiI	CCNNNNNNNGG	3 cut(s)	849, 1660, 1902
AflII	CTTAAG	1 cut(s)	1288
AflIII	ACRYGT	3 cut(s)	438, 951, 1077
AgsI	TTSAA	7 cut(s)	821, 904, 1030, 1301, 1624, 1987, 2039
AhlI	ACTAGT	1 cut(s)	656
AjiI	CACGTC	2 cut(s)	226, 439
AjnI	CCWGG	2 cut(s)	576, 1963
AjuI	GAANNNNNNNTTGG	6 cut(s)	185, 217, 1344, 1376, 1793, 1825
AleI	CACNNNNGTG	1 cut(s)	1562
Alw21I	GWGCWC	3 cut(s)	994, 1372, 1515
Alw26I	GTCTC	3 cut(s)	171, 235, 909
AlwI	GGATC	2 cut(s)	27, 2050
Ama87I	CYCGRG	1 cut(s)	1282
AoxI	GGCC	4 cut(s)	207, 543, 1260, 1474
ApeKI	GCWGC	4 cut(s)	359, 422, 1199, 1584
ApoI	RAATTY	6 cut(s)	529, 708, 793, 838, 1399, 1640
ArsI	GACNNNNNNTTYG	2 cut(s)	700, 732
AspLEI	GCGC	2 cut(s)	808, 1700
AspS9I	GGNCC	3 cut(s)	120, 289, 543
AsuC2I	CCSGG	2 cut(s)	118, 892
AsuHPI	GGTGA	7 cut(s)	254, 736, 842, 992, 1450, 1963, 2101
AsuII	TTCGAA	1 cut(s)	1041
AvaI	CYCGRG	1 cut(s)	1282
AvaII	GGWCC	2 cut(s)	120, 289
BalI	TGGCCA	1 cut(s)	1262
BanII	GRGCYC	1 cut(s)	1515
BauI	CACGAG	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	343
Bbv12I	GWGCWC	3 cut(s)	994, 1372, 1515
BbvI	GCAGC	4 cut(s)	346, 434, 1186, 1596
BccI	CCATC	5 cut(s)	851, 1027, 1403, 1605, 2103
BceAI	ACGGC	1 cut(s)	100
BciT130I	CCWGG	2 cut(s)	578, 1965
BciVI	GTATCC	1 cut(s)	1531
BclI	TGATCA	1 cut(s)	39
BcnI	CCSGG	2 cut(s)	118, 892
BcoDI	GTCTC	3 cut(s)	171, 235, 909
BcuI	ACTAGT	1 cut(s)	656
BfaI	CTAG	2 cut(s)	657, 2103
BfmI	CTRYAG	2 cut(s)	58, 1216
BfrI	CTTAAG	1 cut(s)	1288
BfuAI	ACCTGC	1 cut(s)	1039
BfuI	GTATCC	1 cut(s)	1531
BisI	GCNGC	5 cut(s)	360, 423, 1200, 1585, 1696
BlsI	GCNGC	5 cut(s)	361, 424, 1201, 1586, 1697
Bme1390I	CCNGG	4 cut(s)	118, 578, 892, 1965
Bme18I	GGWCC	2 cut(s)	120, 289
BmeT110I	CYCGRG	1 cut(s)	1282
BmgBI	CACGTC	2 cut(s)	226, 439
BmgT120I	GGNCC	3 cut(s)	120, 289, 543
BmiI	GGNNCC	2 cut(s)	121, 1962
BmrFI	CCNGG	4 cut(s)	118, 578, 892, 1965
BmsI	GCATC	9 cut(s)	484, 577, 600, 793, 1096, 1422, 1515, 2013, 2035
BpiI	GAAGAC	1 cut(s)	343
BpmI	CTGGAG	3 cut(s)	366, 603, 1845
Bpu10I	CCTNAGC	1 cut(s)	1691
Bpu14I	TTCGAA	1 cut(s)	1041
BpuMI	CCSGG	2 cut(s)	118, 892
Bsa29I	ATCGAT	1 cut(s)	1746
BsaAI	YACGTR	1 cut(s)	500
BsaBI	GATNNNNATC	1 cut(s)	1413
BsaI	GGTCTC	1 cut(s)	235
BsaJI	CCNNGG	4 cut(s)	265, 1655, 1896, 1964
BsaWI	WCCGGW	1 cut(s)	1852
BsaXI	ACNNNNNCTCC	4 cut(s)	1161, 1191, 1952, 1982
Bsc4I	CCNNNNNNNGG	3 cut(s)	849, 1660, 1902
Bse118I	RCCGGY	1 cut(s)	1435
Bse1I	ACTGG	2 cut(s)	946, 1263
Bse3DI	GCAATG	1 cut(s)	573
Bse8I	GATNNNNATC	1 cut(s)	1413
BseBI	CCWGG	2 cut(s)	578, 1965
BseCI	ATCGAT	1 cut(s)	1746
BseDI	CCNNGG	4 cut(s)	265, 1655, 1896, 1964
BseGI	GGATG	9 cut(s)	51, 499, 1437, 1450, 1616, 1938, 2026, 2089, 2095
BseJI	GATNNNNATC	1 cut(s)	1413
BseLI	CCNNNNNNNGG	3 cut(s)	849, 1660, 1902
BseMI	GCAATG	1 cut(s)	573
BseMII	CTCAG	4 cut(s)	513, 675, 1682, 1957
BseNI	ACTGG	2 cut(s)	946, 1263
BseRI	GAGGAG	2 cut(s)	638, 1535
BseXI	GCAGC	4 cut(s)	346, 434, 1186, 1596
BseYI	CCCAGC	1 cut(s)	1700
Bsh1236I	CGCG	1 cut(s)	1698
BshFI	GGCC	4 cut(s)	209, 545, 1262, 1476
BshVI	ATCGAT	1 cut(s)	1746
BsiHKAI	GWGCWC	3 cut(s)	994, 1372, 1515
BsiHKCI	CYCGRG	1 cut(s)	1282
BsiSI	CCGG	5 cut(s)	117, 892, 1436, 1547, 1853
BslFI	GGGAC	1 cut(s)	1510
BslI	CCNNNNNNNGG	3 cut(s)	849, 1660, 1902
BsmAI	GTCTC	3 cut(s)	171, 235, 909
BsmFI	GGGAC	1 cut(s)	1510
BsmI	GAATGC	3 cut(s)	522, 766, 1227
BsnI	GGCC	4 cut(s)	209, 545, 1262, 1476
Bso31I	GGTCTC	1 cut(s)	235
BsoBI	CYCGRG	1 cut(s)	1282
Bsp119I	TTCGAA	1 cut(s)	1041
Bsp1286I	GDGCHC	3 cut(s)	994, 1372, 1515
Bsp1407I	TGTACA	1 cut(s)	1177
Bsp143I	GATC	5 cut(s)	32, 39, 414, 1747, 2055
BspACI	CCGC	8 cut(s)	722, 764, 978, 1578, 1696, 1906, 1921, 2030
BspANI	GGCC	4 cut(s)	209, 545, 1262, 1476
BspCNI	CTCAG	4 cut(s)	514, 676, 1683, 1956
BspDI	ATCGAT	1 cut(s)	1746
BspFNI	CGCG	1 cut(s)	1698
BspHI	TCATGA	1 cut(s)	2014
BspLI	GGNNCC	2 cut(s)	121, 1962
BspMAI	CTGCAG	1 cut(s)	1220
BspMI	ACCTGC	1 cut(s)	1039
BspPI	GGATC	2 cut(s)	27, 2050
BspQI	GCTCTTC	1 cut(s)	277
BspT104I	TTCGAA	1 cut(s)	1041
BspTI	CTTAAG	1 cut(s)	1288
BspTNI	GGTCTC	1 cut(s)	235
BsrBI	CCGCTC	1 cut(s)	1921
BsrDI	GCAATG	1 cut(s)	573
BsrFI	RCCGGY	1 cut(s)	1435
BsrGI	TGTACA	1 cut(s)	1177
BsrI	ACTGG	2 cut(s)	946, 1263
BssAI	RCCGGY	1 cut(s)	1435
BssECI	CCNNGG	4 cut(s)	265, 1655, 1896, 1964
BssMI	GATC	5 cut(s)	32, 39, 414, 1747, 2055
BssSI	CACGAG	1 cut(s)	197
BssT1I	CCWWGG	3 cut(s)	265, 1655, 1896
Bst2BI	CACGAG	1 cut(s)	197
Bst2UI	CCWGG	2 cut(s)	578, 1965
Bst4CI	ACNGT	4 cut(s)	62, 473, 716, 2064
Bst6I	CTCTTC	3 cut(s)	130, 277, 1982
BstAFI	CTTAAG	1 cut(s)	1288
BstAUI	TGTACA	1 cut(s)	1177
BstBAI	YACGTR	1 cut(s)	500
BstBI	TTCGAA	1 cut(s)	1041
BstC8I	GCNNGC	7 cut(s)	256, 427, 976, 1279, 1582, 1675, 1904
BstDEI	CTNAG	5 cut(s)	522, 684, 809, 1691, 1943
BstEII	GGTNACC	1 cut(s)	2090
BstENI	CCTNNNNNAGG	1 cut(s)	1900
BstF5I	GGATG	9 cut(s)	51, 499, 1437, 1450, 1616, 1938, 2026, 2089, 2095
BstFNI	CGCG	1 cut(s)	1698
BstHHI	GCGC	2 cut(s)	808, 1700
BstKTI	GATC	5 cut(s)	35, 42, 417, 1750, 2058
BstMAI	GTCTC	3 cut(s)	171, 235, 909
BstMBI	GATC	5 cut(s)	32, 39, 414, 1747, 2055
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 419, 587
BstNI	CCWGG	2 cut(s)	578, 1965
BstNSI	RCATGY	3 cut(s)	922, 1081, 1281
BstPI	GGTNACC	1 cut(s)	2090
BstSCI	CCNGG	4 cut(s)	116, 576, 890, 1963
BstSFI	CTRYAG	2 cut(s)	58, 1216
BstUI	CGCG	1 cut(s)	1698
BstV1I	GCAGC	4 cut(s)	346, 434, 1186, 1596
BstV2I	GAAGAC	1 cut(s)	343
Bsu15I	ATCGAT	1 cut(s)	1746
BsuI	GTATCC	1 cut(s)	1531
BsuRI	GGCC	4 cut(s)	209, 545, 1262, 1476
BsuTUI	ATCGAT	1 cut(s)	1746
BtgZI	GCGATG	1 cut(s)	872
BtrI	CACGTC	2 cut(s)	226, 439
BtsCI	GGATG	9 cut(s)	51, 499, 1437, 1450, 1616, 1938, 2026, 2089, 2095
BtsI	GCAGTG	1 cut(s)	354
BtsIMutI	CAGTG	3 cut(s)	354, 712, 1270
BveI	ACCTGC	1 cut(s)	1039
Cac8I	GCNNGC	7 cut(s)	256, 427, 976, 1279, 1582, 1675, 1904
CciI	TCATGA	1 cut(s)	2014
CfoI	GCGC	2 cut(s)	808, 1700
Cfr10I	RCCGGY	1 cut(s)	1435
Cfr13I	GGNCC	3 cut(s)	120, 289, 543
ClaI	ATCGAT	1 cut(s)	1746
CseI	GACGC	2 cut(s)	309, 363
Csp6I	GTAC	6 cut(s)	163, 469, 949, 1178, 1213, 1326
CviQI	GTAC	6 cut(s)	163, 469, 949, 1178, 1213, 1326
DdeI	CTNAG	5 cut(s)	522, 684, 809, 1691, 1943
DpnI	GATC	5 cut(s)	34, 41, 416, 1749, 2057
DpnII	GATC	5 cut(s)	32, 39, 414, 1747, 2055
DraI	TTTAAA	1 cut(s)	1131
DraIII	CACNNNGTG	1 cut(s)	881
EaeI	YGGCCR	1 cut(s)	1260
Eam1104I	CTCTTC	3 cut(s)	130, 277, 1982
EarI	CTCTTC	3 cut(s)	130, 277, 1982
Ecl136II	GAGCTC	1 cut(s)	1513
Eco130I	CCWWGG	3 cut(s)	265, 1655, 1896
Eco24I	GRGCYC	1 cut(s)	1515
Eco31I	GGTCTC	1 cut(s)	235
Eco47I	GGWCC	2 cut(s)	120, 289
Eco53kI	GAGCTC	1 cut(s)	1513
Eco88I	CYCGRG	1 cut(s)	1282
Eco91I	GGTNACC	1 cut(s)	2090
EcoICRI	GAGCTC	1 cut(s)	1513
EcoNI	CCTNNNNNAGG	1 cut(s)	1900
EcoO109I	RGGNCCY	1 cut(s)	120
EcoO65I	GGTNACC	1 cut(s)	2090
EcoRI	GAATTC	2 cut(s)	529, 838
EcoRII	CCWGG	2 cut(s)	576, 1963
EcoT14I	CCWWGG	3 cut(s)	265, 1655, 1896
EcoT22I	ATGCAT	2 cut(s)	924, 2028
EcoT38I	GRGCYC	1 cut(s)	1515
ErhI	CCWWGG	3 cut(s)	265, 1655, 1896
FaqI	GGGAC	1 cut(s)	1510
FauI	CCCGC	2 cut(s)	1899, 1914
FauNDI	CATATG	3 cut(s)	1590, 1867, 2076
FbaI	TGATCA	1 cut(s)	39
Fnu4HI	GCNGC	5 cut(s)	360, 423, 1200, 1585, 1696
FokI	GGATG	9 cut(s)	38, 506, 1444, 1457, 1623, 1945, 2013, 2082, 2096
FriOI	GRGCYC	1 cut(s)	1515
Fsp4HI	GCNGC	5 cut(s)	360, 423, 1200, 1585, 1696
FspBI	CTAG	2 cut(s)	657, 2103
GlaI	GCGC	2 cut(s)	807, 1699
GluI	GCNGC	5 cut(s)	360, 423, 1200, 1585, 1696
GsaI	CCCAGC	1 cut(s)	1704
GsuI	CTGGAG	3 cut(s)	366, 603, 1845
HaeIII	GGCC	4 cut(s)	209, 545, 1262, 1476
HapII	CCGG	5 cut(s)	117, 892, 1436, 1547, 1853
HgaI	GACGC	2 cut(s)	309, 363
HhaI	GCGC	2 cut(s)	808, 1700
Hin6I	GCGC	2 cut(s)	806, 1698
HinP1I	GCGC	2 cut(s)	806, 1698
HincII	GTYRAC	2 cut(s)	157, 1075
HindII	GTYRAC	2 cut(s)	157, 1075
HindIII	AAGCTT	1 cut(s)	1503
HpaII	CCGG	5 cut(s)	117, 892, 1436, 1547, 1853
HphI	GGTGA	7 cut(s)	254, 736, 842, 992, 1450, 1963, 2101
Hpy166II	GTNNAC	4 cut(s)	97, 157, 951, 1075
Hpy188I	TCNGA	6 cut(s)	32, 379, 1791, 1800, 1946, 2060
Hpy188III	TCNNGA	6 cut(s)	683, 914, 1349, 1624, 1690, 2015
Hpy8I	GTNNAC	4 cut(s)	97, 157, 951, 1075
Hpy99I	CGWCG	3 cut(s)	303, 440, 2064
HpyAV	CCTTC	5 cut(s)	889, 995, 2074, 2081, 2109
HpyCH4III	ACNGT	4 cut(s)	62, 473, 716, 2064
HpyCH4IV	ACGT	7 cut(s)	165, 225, 381, 438, 499, 953, 1554
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 419, 587
HpyF3I	CTNAG	5 cut(s)	522, 684, 809, 1691, 1943
HpySE526I	ACGT	7 cut(s)	165, 225, 381, 438, 499, 953, 1554
HspAI	GCGC	2 cut(s)	806, 1698
Ksp22I	TGATCA	1 cut(s)	39
Kzo9I	GATC	5 cut(s)	32, 39, 414, 1747, 2055
LguI	GCTCTTC	1 cut(s)	277
LmnI	GCTCC	4 cut(s)	595, 1663, 1814, 1960
Lsp1109I	GCAGC	4 cut(s)	346, 434, 1186, 1596
LweI	GCATC	9 cut(s)	484, 577, 600, 793, 1096, 1422, 1515, 2013, 2035
MaeI	CTAG	2 cut(s)	657, 2103
MaeII	ACGT	7 cut(s)	165, 225, 381, 438, 499, 953, 1554
MaeIII	GTNAC	4 cut(s)	769, 980, 1555, 2090
MalI	GATC	5 cut(s)	34, 41, 416, 1749, 2057
MbiI	CCGCTC	1 cut(s)	1921
MboI	GATC	5 cut(s)	32, 39, 414, 1747, 2055
MboII	GAAGA	9 cut(s)	117, 120, 264, 343, 409, 1042, 1418, 1922, 1999
MfeI	CAATTG	1 cut(s)	1359
MhlI	GDGCHC	3 cut(s)	994, 1372, 1515
MlsI	TGGCCA	1 cut(s)	1262
MluNI	TGGCCA	1 cut(s)	1262
MlyI	GAGTC	3 cut(s)	357, 972, 1999
MmeI	TCCRAC	4 cut(s)	573, 940, 1769, 2083
Mox20I	TGGCCA	1 cut(s)	1262
Mph1103I	ATGCAT	2 cut(s)	924, 2028
MscI	TGGCCA	1 cut(s)	1262
MseI	TTAA	6 cut(s)	996, 1130, 1271, 1289, 1778, 2066
MslI	CAYNNNNRTG	1 cut(s)	1562
Msp20I	TGGCCA	1 cut(s)	1262
MspCI	CTTAAG	1 cut(s)	1288
MspI	CCGG	5 cut(s)	117, 892, 1436, 1547, 1853
MspR9I	CCNGG	4 cut(s)	118, 578, 892, 1965
MunI	CAATTG	1 cut(s)	1359
Mva1269I	GAATGC	3 cut(s)	522, 766, 1227
MvaI	CCWGG	2 cut(s)	578, 1965
MvnI	CGCG	1 cut(s)	1698
MwoI	GCNNNNNNNGC	3 cut(s)	98, 419, 587
NciI	CCSGG	2 cut(s)	118, 892
NdeI	CATATG	3 cut(s)	1590, 1867, 2076
NdeII	GATC	5 cut(s)	32, 39, 414, 1747, 2055
NlaIV	GGNNCC	2 cut(s)	121, 1962
NmuCI	GTSAC	2 cut(s)	980, 1555
NsiI	ATGCAT	2 cut(s)	924, 2028
NspI	RCATGY	3 cut(s)	922, 1081, 1281
NspV	TTCGAA	1 cut(s)	1041
OliI	CACNNNNGTG	1 cut(s)	1562
PaeI	GCATGC	1 cut(s)	1281
PaeR7I	CTCGAG	1 cut(s)	1282
PagI	TCATGA	1 cut(s)	2014
PciI	ACATGT	1 cut(s)	1077
PciSI	GCTCTTC	1 cut(s)	277
PctI	GAATGC	3 cut(s)	522, 766, 1227
PflFI	GACNNNGTC	1 cut(s)	227
PflMI	CCANNNNNTGG	1 cut(s)	849
PfoI	TCCNGGA	1 cut(s)	890
PkrI	GCNGC	5 cut(s)	361, 424, 1201, 1586, 1697
PleI	GAGTC	3 cut(s)	356, 971, 1998
PpsI	GAGTC	3 cut(s)	356, 971, 1998
Ppu21I	YACGTR	1 cut(s)	500
PpuMI	RGGWCCY	1 cut(s)	120
PscI	ACATGT	1 cut(s)	1077
Psp124BI	GAGCTC	1 cut(s)	1515
Psp5II	RGGWCCY	1 cut(s)	120
Psp6I	CCWGG	2 cut(s)	576, 1963
PspEI	GGTNACC	1 cut(s)	2090
PspFI	CCCAGC	1 cut(s)	1700
PspGI	CCWGG	2 cut(s)	576, 1963
PspN4I	GGNNCC	2 cut(s)	121, 1962
PspPI	GGNCC	3 cut(s)	120, 289, 543
PspPPI	RGGWCCY	1 cut(s)	120
PspXI	VCTCGAGB	1 cut(s)	1282
PstI	CTGCAG	1 cut(s)	1220
PsyI	GACNNNGTC	1 cut(s)	227
RsaI	GTAC	6 cut(s)	164, 470, 950, 1179, 1214, 1327
RsaNI	GTAC	6 cut(s)	163, 469, 949, 1178, 1213, 1326
RseI	CAYNNNNRTG	1 cut(s)	1562
SacI	GAGCTC	1 cut(s)	1515
SapI	GCTCTTC	1 cut(s)	277
SaqAI	TTAA	6 cut(s)	996, 1130, 1271, 1289, 1778, 2066
SatI	GCNGC	5 cut(s)	360, 423, 1200, 1585, 1696
Sau3AI	GATC	5 cut(s)	32, 39, 414, 1747, 2055
Sau96I	GGNCC	3 cut(s)	120, 289, 543
SchI	GAGTC	3 cut(s)	357, 972, 1999
ScrFI	CCNGG	4 cut(s)	118, 578, 892, 1965
SduI	GDGCHC	3 cut(s)	994, 1372, 1515
SfaNI	GCATC	9 cut(s)	484, 577, 600, 793, 1096, 1422, 1515, 2013, 2035
SfcI	CTRYAG	2 cut(s)	58, 1216
Sfr274I	CTCGAG	1 cut(s)	1282
SfuI	TTCGAA	1 cut(s)	1041
SinI	GGWCC	2 cut(s)	120, 289
SlaI	CTCGAG	1 cut(s)	1282
SmiMI	CAYNNNNRTG	1 cut(s)	1562
SmlI	CTYRAG	2 cut(s)	1282, 1288
SmoI	CTYRAG	2 cut(s)	1282, 1288
SpeI	ACTAGT	1 cut(s)	656
SphI	GCATGC	1 cut(s)	1281
SsiI	CCGC	8 cut(s)	722, 764, 978, 1578, 1696, 1906, 1921, 2030
SspMI	CTAG	2 cut(s)	657, 2103
SstI	GAGCTC	1 cut(s)	1515
StyD4I	CCNGG	4 cut(s)	116, 576, 890, 1963
StyI	CCWWGG	3 cut(s)	265, 1655, 1896
TaaI	ACNGT	4 cut(s)	62, 473, 716, 2064
TaiI	ACGT	7 cut(s)	168, 228, 384, 441, 502, 956, 1557
TaqI	TCGA	7 cut(s)	204, 298, 435, 913, 1041, 1283, 1746
TatI	WGTACW	3 cut(s)	468, 948, 1177
TauI	GCSGC	1 cut(s)	1698
Tru1I	TTAA	6 cut(s)	996, 1130, 1271, 1289, 1778, 2066
Tru9I	TTAA	6 cut(s)	996, 1130, 1271, 1289, 1778, 2066
TscAI	CASTG	3 cut(s)	361, 719, 1270
TseFI	GTSAC	2 cut(s)	980, 1555
TseI	GCWGC	4 cut(s)	359, 422, 1199, 1584
Tsp45I	GTSAC	2 cut(s)	980, 1555
TspGWI	ACGGA	1 cut(s)	121
TspRI	CASTG	3 cut(s)	361, 719, 1270
Tth111I	GACNNNGTC	1 cut(s)	227
Van91I	CCANNNNNTGG	1 cut(s)	849
Vha464I	CTTAAG	1 cut(s)	1288
VpaK11BI	GGWCC	2 cut(s)	120, 289
XagI	CCTNNNNNAGG	1 cut(s)	1900
XapI	RAATTY	6 cut(s)	529, 708, 793, 838, 1399, 1640
XceI	RCATGY	3 cut(s)	922, 1081, 1281
XcmI	CCANNNNNNNNNTGG	2 cut(s)	223, 341
XhoI	CTCGAG	1 cut(s)	1282
XspI	CTAG	2 cut(s)	657, 2103
Zsp2I	ATGCAT	2 cut(s)	924, 2028

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.