Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005038.1

Orthogroup ID

OG0001580

Physical Location & Seq

Genomic Coordinates Reverse (-)

72605 .. 73430

Gene Structure 826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005038.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atgtataaacttcaaggaataggggtggattgtaaaagtggggttgttaaacaacattttgttgctctagatttgaagacttgtatatgcaagagatgggatatctctggtcttctctgtggccttgctatagctgcaatatgctctaagggactgtccttagatgagtttatggatgagtacttcaccaagggaaagtacattaaggcatatgagccaatcatgtatccaatcactagagttaaagagtgggagattatcaacaggcttatcgcaccacctctgtataggaggcagcctggaagacctaaaacagcaagaaccaaggaaccaggtaaggtagcaccacctccaagacaaagcaagctttccaaggttcaagctgataatgttgaacctgaagctgttccagtagagaatgttcaagaatatgttccggtagataatgttcaagaagatgttccatcccctgctccagctcctgcttatgtgcctaatatggcatcacaacaatccagcaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00592 ko01110 map00592 map01110

Pfam Domains

Protein Families

Methyltransf_7

Protein Analysis

174

Amino Acids

19.37

Weight (kDa)

8.75

Isoelectric Point (pI)

57.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680
fragaria_vesca	FvH4_7g03841 FvH4_7g03850
malus_domestica	MD02G1276700.v1.1
prunus_persica	Prupe.2G043400_v2.0.a1
pyrus_communis	pycom02g23700
rosa_chinensis	RchiOBHm_Chr1g0326811 RchiOBHm_Chr1g0326821 RchiOBHm_Chr1g0327271 RchiOBHm_Chr1g0327321
rosa_laevigata	RLG00000030002 RLG00000030005 RLG00000030054
rosa_multiflora	Rmu_sc0001021.1_g000002 Rmu_sc0003600.1_g000043 Rmu_sc0005038.1_g000015 Rmu_sc0010151.1_g000003 Rmu_sc0010151.1_g000004 Rmu_sc0020365.1_g000001
rosa_roxburghii	Rroxscaffold_2G00128000 Rroxscaffold_4G00322770 Rroxscaffold_4G00322870
rosa_rugosa	Rorug01G0064900 Rorug01G0065300 Rorug01G0065400 Rorug01G0065500 Rorug01G0065500
rosa_samantha	Rh1AG082500 Rh1AG083100 Rh1BG065600 Rh1BG065900 Rh1BG066000 Rh1CG080500 Rh1DG087500 Rh2AG148500 Rh2AG148600 Rh2BG154000 Rh2DG154200 Rh3CG329400
rosa_wichuraiana	Rw1G006500 Rw1G006530 Rw2G011590 Rw2G011600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	420
AfaI	GTAC	2 cut(s)	182, 200
AgsI	TTSAA	6 cut(s)	14, 76, 380, 395, 425, 452
AjnI	CCWGG	2 cut(s)	298, 331
AluBI	AGCT	5 cut(s)	134, 367, 383, 404, 479
AluI	AGCT	5 cut(s)	134, 367, 383, 404, 479
AlwNI	CAGNNNCTG	1 cut(s)	482
AoxI	GGCC	1 cut(s)	121
ApeKI	GCWGC	2 cut(s)	134, 295
Asp700I	GAANNNNTTC	3 cut(s)	405, 432, 459
AsuHPI	GGTGA	1 cut(s)	178
BbsI	GAAGAC	3 cut(s)	83, 104, 310
BbvI	GCAGC	2 cut(s)	121, 307
BccI	CCATC	2 cut(s)	90, 472
BciT130I	CCWGG	2 cut(s)	300, 333
BciVI	GTATCC	1 cut(s)	237
BfaI	CTAG	2 cut(s)	68, 237
BfmI	CTRYAG	1 cut(s)	129
BfuI	GTATCC	1 cut(s)	237
BisI	GCNGC	2 cut(s)	135, 296
BlsI	GCNGC	2 cut(s)	136, 297
BmcAI	AGTACT	1 cut(s)	182
Bme1390I	CCNGG	2 cut(s)	300, 333
BmiI	GGNNCC	1 cut(s)	330
BmrFI	CCNGG	2 cut(s)	300, 333
BmsI	GCATC	1 cut(s)	512
BpiI	GAAGAC	3 cut(s)	83, 104, 310
BpmI	CTGGAG	1 cut(s)	459
BsaJI	CCNNGG	3 cut(s)	189, 324, 372
BsaWI	WCCGGW	1 cut(s)	436
Bse1I	ACTGG	1 cut(s)	410
BseBI	CCWGG	2 cut(s)	300, 333
BseDI	CCNNGG	3 cut(s)	189, 324, 372
BseGI	GGATG	2 cut(s)	181, 464
BseNI	ACTGG	1 cut(s)	410
BseXI	GCAGC	2 cut(s)	121, 307
BshFI	GGCC	1 cut(s)	123
BsiSI	CCGG	1 cut(s)	437
BslFI	GGGAC	1 cut(s)	165
BsmFI	GGGAC	1 cut(s)	165
BsnI	GGCC	1 cut(s)	123
BspANI	GGCC	1 cut(s)	123
BspLI	GGNNCC	1 cut(s)	330
BsrI	ACTGG	1 cut(s)	410
BssECI	CCNNGG	3 cut(s)	189, 324, 372
BssT1I	CCWWGG	3 cut(s)	189, 324, 372
Bst2UI	CCWGG	2 cut(s)	300, 333
Bst4CI	ACNGT	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	365
BstDEI	CTNAG	2 cut(s)	147, 160
BstF5I	GGATG	2 cut(s)	181, 464
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstNI	CCWGG	2 cut(s)	300, 333
BstSCI	CCNGG	2 cut(s)	298, 331
BstSFI	CTRYAG	1 cut(s)	129
BstV1I	GCAGC	2 cut(s)	121, 307
BstV2I	GAAGAC	3 cut(s)	83, 104, 310
BsuI	GTATCC	1 cut(s)	237
BsuRI	GGCC	1 cut(s)	123
BtsCI	GGATG	2 cut(s)	181, 464
Cac8I	GCNNGC	1 cut(s)	365
CaiI	CAGNNNCTG	1 cut(s)	482
CsiI	ACCWGGT	1 cut(s)	331
Csp6I	GTAC	2 cut(s)	181, 199
CviAII	CATG	1 cut(s)	223
CviJI	RGCY	9 cut(s)	123, 134, 217, 268, 298, 367, 383, 404, 479
CviKI_1	RGCY	9 cut(s)	123, 134, 217, 268, 298, 367, 383, 404, 479
CviQI	GTAC	2 cut(s)	181, 199
DdeI	CTNAG	2 cut(s)	147, 160
Eco130I	CCWWGG	3 cut(s)	189, 324, 372
Eco32I	GATATC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	420
EcoRII	CCWGG	2 cut(s)	298, 331
EcoRV	GATATC	1 cut(s)	103
EcoT14I	CCWWGG	3 cut(s)	189, 324, 372
ErhI	CCWWGG	3 cut(s)	189, 324, 372
FaeI	CATG	1 cut(s)	226
FaqI	GGGAC	1 cut(s)	165
FatI	CATG	1 cut(s)	222
FauNDI	CATATG	1 cut(s)	211
Fnu4HI	GCNGC	2 cut(s)	135, 296
FokI	GGATG	2 cut(s)	188, 451
Fsp4HI	GCNGC	2 cut(s)	135, 296
FspBI	CTAG	2 cut(s)	68, 237
GluI	GCNGC	2 cut(s)	135, 296
GsuI	CTGGAG	1 cut(s)	459
HaeIII	GGCC	1 cut(s)	123
HapII	CCGG	1 cut(s)	437
Hin1II	CATG	1 cut(s)	226
HindIII	AAGCTT	1 cut(s)	365
HpaII	CCGG	1 cut(s)	437
HphI	GGTGA	1 cut(s)	178
Hpy188III	TCNNGA	3 cut(s)	68, 425, 452
HpyCH4III	ACNGT	1 cut(s)	156
HpyCH4V	TGCA	2 cut(s)	90, 137
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpyF3I	CTNAG	2 cut(s)	147, 160
Hsp92II	CATG	1 cut(s)	226
LmnI	GCTCC	2 cut(s)	478, 484
Lsp1109I	GCAGC	2 cut(s)	121, 307
LweI	GCATC	1 cut(s)	512
MabI	ACCWGGT	1 cut(s)	331
MaeI	CTAG	2 cut(s)	68, 237
MboII	GAAGA	4 cut(s)	88, 104, 315, 467
MluCI	AATT	1 cut(s)	520
MnlI	CCTC	3 cut(s)	285, 291, 360
MroXI	GAANNNNTTC	3 cut(s)	405, 432, 459
MseI	TTAA	4 cut(s)	48, 204, 243, 523
MspI	CCGG	1 cut(s)	437
MspR9I	CCNGG	2 cut(s)	300, 333
MvaI	CCWGG	2 cut(s)	300, 333
MwoI	GCNNNNNNNGC	1 cut(s)	134
NdeI	CATATG	1 cut(s)	211
NlaIII	CATG	1 cut(s)	226
NlaIV	GGNNCC	1 cut(s)	330
PdmI	GAANNNNTTC	3 cut(s)	405, 432, 459
PkrI	GCNGC	2 cut(s)	136, 297
Psp6I	CCWGG	2 cut(s)	298, 331
PspGI	CCWGG	2 cut(s)	298, 331
PspN4I	GGNNCC	1 cut(s)	330
PsrI	GAACNNNNNNTAC	4 cut(s)	405, 432, 437, 464
PstNI	CAGNNNCTG	1 cut(s)	482
RsaI	GTAC	2 cut(s)	182, 200
RsaNI	GTAC	2 cut(s)	181, 199
SaqAI	TTAA	4 cut(s)	48, 204, 243, 523
SatI	GCNGC	2 cut(s)	135, 296
ScaI	AGTACT	1 cut(s)	182
ScrFI	CCNGG	2 cut(s)	300, 333
SexAI	ACCWGGT	1 cut(s)	331
SfaNI	GCATC	1 cut(s)	512
SfcI	CTRYAG	1 cut(s)	129
Sse9I	AATT	1 cut(s)	520
SspMI	CTAG	2 cut(s)	68, 237
StyD4I	CCNGG	2 cut(s)	298, 331
StyI	CCWWGG	3 cut(s)	189, 324, 372
TaaI	ACNGT	1 cut(s)	156
TasI	AATT	1 cut(s)	520
TatI	WGTACW	2 cut(s)	180, 198
Tru1I	TTAA	4 cut(s)	48, 204, 243, 523
Tru9I	TTAA	4 cut(s)	48, 204, 243, 523
TseI	GCWGC	2 cut(s)	134, 295
XbaI	TCTAGA	1 cut(s)	67
XmnI	GAANNNNTTC	3 cut(s)	405, 432, 459
XspI	CTAG	2 cut(s)	68, 237
ZrmI	AGTACT	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.