Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001580

Physical Location & Seq

Genomic Coordinates Forward (+)

53286112 .. 53290475

Gene Structure 4364 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00322770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2088 bp

ATGAGTCTTTCTTGTCACTACCGATCCTTGTTCTCCACTCTCCAACACTACACTCGTCTAAAGGACCTCCAAAGAGGCAAACCTCTCCACGCTCACATCATCACAACCGGTTCCTCCTCTTGCGTCTACATTGCCAATGCCCTCATCAACCTCTACGTCAAATCCGGACACTTACACACAGCCCACCTCGTATTCGAAACCATACCTCACAGAGACGTGGTCTCATGGAACACCCTCATCAACGGCTACTCTCAACAGGGCTTCAGATACTCCTCGTTTGTGTTGGACCTTTTTCGACGCATGCGGGGTCAGAACACCTCCCCGGATTCGCACACTTTTGCTGGAGTTTGTAATGCTGCTTCATATGTAAAGGATGTTTTGGGTGGCGGGCAAGTTCACACGGTTGCTGTTAAGGCTGTGGGCTGTTTTGATGTGTTTGTTGGAAGCTCTCTTGTTAATATGTATTGTAAGATGGGTCTAGTGGGGGATGCACGTAAGGTGTTTGATGAAATGCTTGTGAGGAATTCGGTTACTTGGGCTACTATGATTTCTGGGTATGCAATGCAACAGTTGGGTGCAGATGGATTAGAGGTTTTTATACTGATGCGTAGGAGTGAGGAGAGGGAAGAAGAGAATGAGTTTGTTTTGACCGCGGTTCTTAGTGGTTTGGCGGGTCCTGAAGTTGTTGAGACAGGCAAGCAGGTTCATTGTCTTGCGGTGAAAAATGGGCTGATGTGTAATGTTTCTGTTGGGAATGCGCTTGTCACGATGTATGCGAAATGTGGGTGTTTAGATGATGCGCTTAGAACTTTTGAACAGTGTGGCGATAAGAATTCTATCACATGGTCTGCAATGATATCTGGTTTTGCGCAGAGTGGGGATTCGCAAAAGGCTTTGGACTTGTTTTCAGACATGCATTTTTCTGGGATAGTGCCGACTGAGTTTGCGTTTGGTGGGGTCATTAGTGCCTGTAGTGACATCAGTGCTCTTGAACAAGGAAAGCAAGTGCATAGTTATTTGCTCAAGTTGGGATTTGAATTCCAGATGTATATAATGTCAGCTTTGGTTGACATGTATGGCAAATGTGGTAGTGTTAGTGATGCTCGGAAGGGGTTTGATTGTATAAAAGAACCTGATATTGTTCTCTGGAGTTCTATGATTGGAGGGTATGTACAAAATGGGGAGAATGAAGCTGCTTTGAGTTTATATTGTAGAATGCAGAGGGAGGGATTTTTTCCCAATGAACTTACTATGGCCAGTCTCCTAAAAGCATGTTCAAGCCTATGTGCTTTTGAACAAGGTAAGCAAATCCATGCGCGTACCATTAAGCATGGATTCAGTCTTGAATTTCCAATTGGAAGTGCTCTTTTCACTATGTATGCAAAGTGTGGGAGTTTGGAAGATGGGAAGTTAGTATTTAGGAGAATGCCTACGAGAGATGTAGTGTCTTGGAATGCAATGATATCTGGGCTTTCACAAAATGGGCAGGGTAATGAAGCTCTAGAGCTCTTTGAGGAGATGCGATTGGGGATGATGTCTAATGAATTTGGCATTGCGCCAAGGGTGGAGCATTATGCTTGCATGGTTGATGTCCTGACCCGCGCTGGGAAGTTAGATGAAGCCAAAGATTTCATAGAGTCAGCAACTATTGATCATGGCATCTGTTTATGGCGTATTTTATTAAGTGCTTGTCGAAACTATCGGAATCATGAATTGGGAGCATATGCCGGAGAGAAGCTAATGGAGTTAGGTTCACTAGAATCACAGGCTTACGTGCTATTGTCAAGCATCTATACTTCCCTGGGTAGGCGGGAAGATGTTGAGCGGGTACGGAGGATTATGAAACTTCGAGGGGTGAGTAAGAAGCCTGGCTGTAGCTGGATTGAGTTGAAGAGTCAGGTTCATGTGTTTGTTGTTGGTGATATGATGCATCCACAGATTGAGAGTATAGGTGTTGAGATCCGAAGGAACTCTGTTTTACTTAACAGTGTTAAGGAGCCAGGAAACCTCCTGTGGATGGAGATAGGATTGGTCATTCCAGCAAAATTGGAGGTGATGGTAGCAATGGAGATGGATTCTGGGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

695

Amino Acids

76.92

Weight (kDa)

6.3

Isoelectric Point (pI)

42.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	71 - 114	2.8e-06	PPR repeat family
PPR_2	PF13041	277 - 325	2.9e-09	PPR repeat family
PPR	PF01535	280 - 310	3.6e-07	PPR repeat
PPR_2	PF13041	378 - 426	1e-11	PPR repeat family
PPR	PF01535	381 - 411	4.2e-07	PPR repeat
PPR_2	PF13041	479 - 508	2e-08	PPR repeat family
PPR_1	PF12854	479 - 508	1.1e-06	PPR repeat
PPR	PF01535	482 - 508	6.4e-09	PPR repeat
E_motif	PF20431	567 - 629	5.6e-19	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680
fragaria_vesca	FvH4_7g03841 FvH4_7g03850
malus_domestica	MD02G1276700.v1.1
prunus_persica	Prupe.2G043400_v2.0.a1
pyrus_communis	pycom02g23700
rosa_chinensis	RchiOBHm_Chr1g0326811 RchiOBHm_Chr1g0326821 RchiOBHm_Chr1g0327271 RchiOBHm_Chr1g0327321
rosa_laevigata	RLG00000030002 RLG00000030005 RLG00000030054
rosa_multiflora	Rmu_sc0001021.1_g000002 Rmu_sc0003600.1_g000043 Rmu_sc0005038.1_g000015 Rmu_sc0010151.1_g000003 Rmu_sc0010151.1_g000004 Rmu_sc0020365.1_g000001
rosa_roxburghii	Rroxscaffold_2G00128000 Rroxscaffold_4G00322770 Rroxscaffold_4G00322870
rosa_rugosa	Rorug01G0064900 Rorug01G0065300 Rorug01G0065400 Rorug01G0065500 Rorug01G0065500
rosa_samantha	Rh1AG082500 Rh1AG083100 Rh1BG065600 Rh1BG065900 Rh1BG066000 Rh1CG080500 Rh1DG087500 Rh2AG148500 Rh2AG148600 Rh2BG154000 Rh2DG154200 Rh3CG329400
rosa_wichuraiana	Rw1G006500 Rw1G006530 Rw2G011590 Rw2G011600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	870
Acc36I	ACCTGC	1 cut(s)	691
AccBSI	CCGCTC	1 cut(s)	1825
AccI	GTMKAC	1 cut(s)	126
AccII	CGCG	3 cut(s)	653, 1318, 1602
AccIII	TCCGGA	1 cut(s)	164
AciI	CCGC	9 cut(s)	304, 387, 651, 653, 671, 716, 1600, 1810, 1825
AclWI	GGATC	2 cut(s)	18, 1954
AcoI	YGGCCR	1 cut(s)	1254
AcsI	RAATTY	5 cut(s)	523, 832, 1037, 1346, 1544
AcuI	CTGAAG	2 cut(s)	247, 699
AfaI	GTAC	3 cut(s)	1173, 1321, 1830
AfiI	CCNNNNNNNGG	3 cut(s)	1605, 1806, 2017
AflIII	ACRYGT	1 cut(s)	1071
AgeI	ACCGGT	1 cut(s)	107
AgsI	TTSAA	7 cut(s)	815, 992, 1037, 1278, 1295, 1346, 1891
AjiI	CACGTC	1 cut(s)	217
AjnI	CCWGG	3 cut(s)	1800, 1867, 1999
AjuI	GAANNNNNNNTTGG	4 cut(s)	1338, 1370, 1697, 1729
AluBI	AGCT	7 cut(s)	447, 1061, 1193, 1499, 1507, 1738, 1878
AluI	AGCT	7 cut(s)	447, 1061, 1193, 1499, 1507, 1738, 1878
Alw21I	GWGCWC	3 cut(s)	988, 1366, 1509
Alw26I	GTCTC	4 cut(s)	207, 226, 683, 1265
AlwI	GGATC	2 cut(s)	18, 1954
Aor13HI	TCCGGA	1 cut(s)	164
AoxI	GGCC	1 cut(s)	1254
ApeKI	GCWGC	2 cut(s)	356, 1193
ApoI	RAATTY	5 cut(s)	523, 832, 1037, 1346, 1544
AsiGI	ACCGGT	1 cut(s)	107
AspLEI	GCGC	6 cut(s)	760, 802, 871, 1318, 1558, 1604
AspS9I	GGNCC	3 cut(s)	64, 286, 674
AsuC2I	CCSGG	1 cut(s)	323
AsuHPI	GGTGA	4 cut(s)	730, 1867, 1931, 2065
AsuII	TTCGAA	1 cut(s)	195
AvaII	GGWCC	3 cut(s)	64, 286, 674
BalI	TGGCCA	1 cut(s)	1256
BanII	GRGCYC	1 cut(s)	1509
BarI	GAAGNNNNNNTAC	2 cut(s)	343, 375
Bbv12I	GWGCWC	3 cut(s)	988, 1366, 1509
BbvI	GCAGC	2 cut(s)	343, 1180
BccI	CCATC	6 cut(s)	466, 575, 1397, 2011, 2050, 2065
BceAI	ACGGC	1 cut(s)	259
BciT130I	CCWGG	3 cut(s)	1802, 1869, 2001
BclI	TGATCA	1 cut(s)	1651
BcnI	CCSGG	1 cut(s)	323
BcoDI	GTCTC	4 cut(s)	207, 226, 683, 1265
BfaI	CTAG	3 cut(s)	479, 1502, 1757
BfmI	CTRYAG	2 cut(s)	970, 1873
BfuAI	ACCTGC	1 cut(s)	691
BisI	GCNGC	2 cut(s)	357, 1194
BlsI	GCNGC	2 cut(s)	358, 1195
Bme1390I	CCNGG	4 cut(s)	323, 1802, 1869, 2001
Bme18I	GGWCC	3 cut(s)	64, 286, 674
BmgBI	CACGTC	1 cut(s)	217
BmgT120I	GGNCC	3 cut(s)	64, 286, 674
BmiI	GGNNCC	3 cut(s)	112, 675, 1998
BmrFI	CCNGG	4 cut(s)	323, 1802, 1869, 2001
BmsI	GCATC	9 cut(s)	478, 594, 787, 1090, 1509, 1668, 1797, 1917, 1939
BpmI	CTGGAG	2 cut(s)	363, 1168
Bpu14I	TTCGAA	1 cut(s)	195
BpuEI	CTTGAG	1 cut(s)	1007
BpuMI	CCSGG	1 cut(s)	323
BsaAI	YACGTR	2 cut(s)	494, 1774
BsaI	GGTCTC	1 cut(s)	226
BsaJI	CCNNGG	5 cut(s)	321, 651, 1559, 1800, 1801
BsaWI	WCCGGW	2 cut(s)	107, 164
BsaXI	ACNNNNNCTCC	2 cut(s)	1155, 1185
Bsc4I	CCNNNNNNNGG	3 cut(s)	1605, 1806, 2017
Bse118I	RCCGGY	1 cut(s)	107
Bse1I	ACTGG	1 cut(s)	1257
Bse3DI	GCAATG	6 cut(s)	129, 567, 858, 1464, 1551, 2070
BseAI	TCCGGA	1 cut(s)	164
BseBI	CCWGG	3 cut(s)	1802, 1869, 2001
BseDI	CCNNGG	5 cut(s)	321, 651, 1559, 1800, 1801
BseGI	GGATG	5 cut(s)	379, 493, 1536, 1930, 2022
BseLI	CCNNNNNNNGG	3 cut(s)	1605, 1806, 2017
BseMI	GCAATG	6 cut(s)	129, 567, 858, 1464, 1551, 2070
BseMII	CTCAG	1 cut(s)	930
BseNI	ACTGG	1 cut(s)	1257
BseRI	GAGGAG	4 cut(s)	106, 262, 632, 1529
BseXI	GCAGC	2 cut(s)	343, 1180
BseYI	CCCAGC	1 cut(s)	1604
BsgI	GTGCAG	1 cut(s)	597
Bsh1236I	CGCG	3 cut(s)	653, 1318, 1602
BshFI	GGCC	1 cut(s)	1256
BshTI	ACCGGT	1 cut(s)	107
BsiHKAI	GWGCWC	3 cut(s)	988, 1366, 1509
BsiSI	CCGG	4 cut(s)	108, 165, 323, 1728
BslI	CCNNNNNNNGG	3 cut(s)	1605, 1806, 2017
BsmAI	GTCTC	4 cut(s)	207, 226, 683, 1265
BsmBI	CGTCTC	1 cut(s)	207
BsmI	GAATGC	4 cut(s)	760, 1221, 1431, 1459
BsnI	GGCC	1 cut(s)	1256
Bso31I	GGTCTC	1 cut(s)	226
Bsp119I	TTCGAA	1 cut(s)	195
Bsp1286I	GDGCHC	3 cut(s)	988, 1366, 1509
Bsp13I	TCCGGA	1 cut(s)	164
Bsp1407I	TGTACA	1 cut(s)	1171
Bsp143I	GATC	3 cut(s)	23, 1651, 1959
BspACI	CCGC	9 cut(s)	304, 387, 651, 653, 671, 716, 1600, 1810, 1825
BspANI	GGCC	1 cut(s)	1256
BspCNI	CTCAG	1 cut(s)	931
BspEI	TCCGGA	1 cut(s)	164
BspFNI	CGCG	3 cut(s)	653, 1318, 1602
BspHI	TCATGA	1 cut(s)	1708
BspLI	GGNNCC	3 cut(s)	112, 675, 1998
BspMI	ACCTGC	1 cut(s)	691
BspPI	GGATC	2 cut(s)	18, 1954
BspT104I	TTCGAA	1 cut(s)	195
BspTNI	GGTCTC	1 cut(s)	226
BsrBI	CCGCTC	1 cut(s)	1825
BsrDI	GCAATG	6 cut(s)	129, 567, 858, 1464, 1551, 2070
BsrFI	RCCGGY	1 cut(s)	107
BsrGI	TGTACA	1 cut(s)	1171
BsrI	ACTGG	1 cut(s)	1257
BssAI	RCCGGY	1 cut(s)	107
BssECI	CCNNGG	5 cut(s)	321, 651, 1559, 1800, 1801
BssMI	GATC	3 cut(s)	23, 1651, 1959
BssT1I	CCWWGG	1 cut(s)	1559
Bst2UI	CCWGG	3 cut(s)	1802, 1869, 2001
Bst4CI	ACNGT	4 cut(s)	403, 570, 819, 1988
Bst6I	CTCTTC	2 cut(s)	624, 1886
BstAUI	TGTACA	1 cut(s)	1171
BstBAI	YACGTR	2 cut(s)	494, 1774
BstBI	TTCGAA	1 cut(s)	195
BstC8I	GCNNGC	4 cut(s)	302, 389, 698, 1579
BstDEI	CTNAG	3 cut(s)	659, 803, 939
BstDSI	CCRYGG	1 cut(s)	651
BstF5I	GGATG	5 cut(s)	379, 493, 1536, 1930, 2022
BstFNI	CGCG	3 cut(s)	653, 1318, 1602
BstHHI	GCGC	6 cut(s)	760, 802, 871, 1318, 1558, 1604
BstKTI	GATC	3 cut(s)	26, 1654, 1962
BstMAI	GTCTC	4 cut(s)	207, 226, 683, 1265
BstMBI	GATC	3 cut(s)	23, 1651, 1959
BstMWI	GCNNNNNNNGC	1 cut(s)	413
BstNI	CCWGG	3 cut(s)	1802, 1869, 2001
BstNSI	RCATGY	4 cut(s)	304, 916, 1075, 1275
BstSCI	CCNGG	4 cut(s)	321, 1800, 1867, 1999
BstSFI	CTRYAG	2 cut(s)	970, 1873
BstUI	CGCG	3 cut(s)	653, 1318, 1602
BstV1I	GCAGC	2 cut(s)	343, 1180
BstX2I	RGATCY	1 cut(s)	1959
BstYI	RGATCY	1 cut(s)	1959
BsuRI	GGCC	1 cut(s)	1256
BtgI	CCRYGG	1 cut(s)	651
BtrI	CACGTC	1 cut(s)	217
BtsCI	GGATG	5 cut(s)	379, 493, 1536, 1930, 2022
BtsIMutI	CAGTG	3 cut(s)	824, 988, 1993
BveI	ACCTGC	1 cut(s)	691
Cac8I	GCNNGC	4 cut(s)	302, 389, 698, 1579
CciI	TCATGA	1 cut(s)	1708
CfoI	GCGC	6 cut(s)	760, 802, 871, 1318, 1558, 1604
Cfr10I	RCCGGY	1 cut(s)	107
Cfr13I	GGNCC	3 cut(s)	64, 286, 674
Cfr42I	CCGCGG	1 cut(s)	654
CseI	GACGC	2 cut(s)	112, 306
Csp6I	GTAC	3 cut(s)	1172, 1320, 1829
CspAI	ACCGGT	1 cut(s)	107
CviQI	GTAC	3 cut(s)	1172, 1320, 1829
DdeI	CTNAG	3 cut(s)	659, 803, 939
DpnI	GATC	3 cut(s)	25, 1653, 1961
DpnII	GATC	3 cut(s)	23, 1651, 1959
EaeI	YGGCCR	1 cut(s)	1254
Eam1104I	CTCTTC	2 cut(s)	624, 1886
EarI	CTCTTC	2 cut(s)	624, 1886
Ecl136II	GAGCTC	1 cut(s)	1507
Eco130I	CCWWGG	1 cut(s)	1559
Eco24I	GRGCYC	1 cut(s)	1509
Eco31I	GGTCTC	1 cut(s)	226
Eco32I	GATATC	2 cut(s)	858, 1464
Eco47I	GGWCC	3 cut(s)	64, 286, 674
Eco53kI	GAGCTC	1 cut(s)	1507
Eco57I	CTGAAG	2 cut(s)	247, 699
EcoICRI	GAGCTC	1 cut(s)	1507
EcoO109I	RGGNCCY	2 cut(s)	64, 674
EcoRI	GAATTC	3 cut(s)	523, 832, 1037
EcoRII	CCWGG	3 cut(s)	1800, 1867, 1999
EcoRV	GATATC	2 cut(s)	858, 1464
EcoT14I	CCWWGG	1 cut(s)	1559
EcoT22I	ATGCAT	2 cut(s)	918, 1932
EcoT38I	GRGCYC	1 cut(s)	1509
ErhI	CCWWGG	1 cut(s)	1559
Esp3I	CGTCTC	1 cut(s)	207
FauI	CCCGC	6 cut(s)	297, 380, 664, 1607, 1803, 1818
FauNDI	CATATG	2 cut(s)	364, 1723
FbaI	TGATCA	1 cut(s)	1651
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	2 cut(s)	357, 1194
FokI	GGATG	5 cut(s)	386, 500, 1543, 1917, 2029
FriOI	GRGCYC	1 cut(s)	1509
Fsp4HI	GCNGC	2 cut(s)	357, 1194
FspBI	CTAG	3 cut(s)	479, 1502, 1757
FspI	TGCGCA	1 cut(s)	870
GlaI	GCGC	6 cut(s)	759, 801, 870, 1317, 1557, 1603
GluI	GCNGC	2 cut(s)	357, 1194
GsaI	CCCAGC	1 cut(s)	1608
GsuI	CTGGAG	2 cut(s)	363, 1168
HaeIII	GGCC	1 cut(s)	1256
HapII	CCGG	4 cut(s)	108, 165, 323, 1728
HgaI	GACGC	2 cut(s)	112, 306
HhaI	GCGC	6 cut(s)	760, 802, 871, 1318, 1558, 1604
Hin6I	GCGC	6 cut(s)	758, 800, 869, 1316, 1556, 1602
HinP1I	GCGC	6 cut(s)	758, 800, 869, 1316, 1556, 1602
HincII	GTYRAC	1 cut(s)	1069
HindII	GTYRAC	1 cut(s)	1069
HinfI	GANTC	9 cut(s)	4, 326, 881, 1335, 1637, 1705, 1760, 1894, 2075
HpaII	CCGG	4 cut(s)	108, 165, 323, 1728
HphI	GGTGA	4 cut(s)	730, 1867, 1931, 2065
Hpy166II	GTNNAC	4 cut(s)	127, 397, 1069, 1754
Hpy188I	TCNGA	6 cut(s)	266, 312, 910, 1107, 1704, 1964
Hpy8I	GTNNAC	4 cut(s)	127, 397, 1069, 1754
Hpy99I	CGWCG	1 cut(s)	300
HpyAV	CCTTC	2 cut(s)	1102, 1959
HpyCH4III	ACNGT	4 cut(s)	403, 570, 819, 1988
HpyCH4IV	ACGT	4 cut(s)	156, 216, 493, 1773
HpyF10VI	GCNNNNNNNGC	1 cut(s)	413
HpyF3I	CTNAG	3 cut(s)	659, 803, 939
HpySE526I	ACGT	4 cut(s)	156, 216, 493, 1773
HspAI	GCGC	6 cut(s)	758, 800, 869, 1316, 1556, 1602
Kpn2I	TCCGGA	1 cut(s)	164
Ksp22I	TGATCA	1 cut(s)	1651
KspI	CCGCGG	1 cut(s)	654
Kzo9I	GATC	3 cut(s)	23, 1651, 1959
LmnI	GCTCC	3 cut(s)	1567, 1718, 1996
Lsp1109I	GCAGC	2 cut(s)	343, 1180
LweI	GCATC	9 cut(s)	478, 594, 787, 1090, 1509, 1668, 1797, 1917, 1939
MaeI	CTAG	3 cut(s)	479, 1502, 1757
MaeII	ACGT	4 cut(s)	156, 216, 493, 1773
MaeIII	GTNAC	4 cut(s)	14, 529, 763, 974
MalI	GATC	3 cut(s)	25, 1653, 1961
MbiI	CCGCTC	1 cut(s)	1825
MboI	GATC	3 cut(s)	23, 1651, 1959
MboII	GAAGA	5 cut(s)	638, 641, 1412, 1826, 1903
MfeI	CAATTG	1 cut(s)	1353
MflI	RGATCY	1 cut(s)	1959
MhlI	GDGCHC	3 cut(s)	988, 1366, 1509
MlsI	TGGCCA	1 cut(s)	1256
MluCI	AATT	8 cut(s)	523, 832, 1037, 1346, 1353, 1544, 1712, 2045
MluNI	TGGCCA	1 cut(s)	1256
MlyI	GAGTC	3 cut(s)	13, 1646, 1903
MmeI	TCCRAC	3 cut(s)	67, 264, 421
Mox20I	TGGCCA	1 cut(s)	1256
Mph1103I	ATGCAT	2 cut(s)	918, 1932
MroI	TCCGGA	1 cut(s)	164
MscI	TGGCCA	1 cut(s)	1256
MseI	TTAA	6 cut(s)	411, 456, 1326, 1682, 1983, 1992
Msp20I	TGGCCA	1 cut(s)	1256
MspA1I	CMGCKG	1 cut(s)	653
MspI	CCGG	4 cut(s)	108, 165, 323, 1728
MspR9I	CCNGG	4 cut(s)	323, 1802, 1869, 2001
MunI	CAATTG	1 cut(s)	1353
Mva1269I	GAATGC	4 cut(s)	760, 1221, 1431, 1459
MvaI	CCWGG	3 cut(s)	1802, 1869, 2001
MvnI	CGCG	3 cut(s)	653, 1318, 1602
MwoI	GCNNNNNNNGC	1 cut(s)	413
NciI	CCSGG	1 cut(s)	323
NdeI	CATATG	2 cut(s)	364, 1723
NdeII	GATC	3 cut(s)	23, 1651, 1959
NlaIV	GGNNCC	3 cut(s)	112, 675, 1998
NmuCI	GTSAC	3 cut(s)	14, 763, 974
NsbI	TGCGCA	1 cut(s)	870
NsiI	ATGCAT	2 cut(s)	918, 1932
NspI	RCATGY	4 cut(s)	304, 916, 1075, 1275
NspV	TTCGAA	1 cut(s)	195
PaeI	GCATGC	1 cut(s)	304
PagI	TCATGA	1 cut(s)	1708
PasI	CCCWGGG	1 cut(s)	1801
PciI	ACATGT	1 cut(s)	1071
PcsI	WCGNNNNNNNCGW	1 cut(s)	773
PctI	GAATGC	4 cut(s)	760, 1221, 1431, 1459
PfeI	GAWTC	6 cut(s)	326, 881, 1335, 1705, 1760, 2075
PflFI	GACNNNGTC	1 cut(s)	218
PinAI	ACCGGT	1 cut(s)	107
PkrI	GCNGC	2 cut(s)	358, 1195
PleI	GAGTC	3 cut(s)	12, 1645, 1902
PpsI	GAGTC	3 cut(s)	12, 1645, 1902
Ppu21I	YACGTR	2 cut(s)	494, 1774
PpuMI	RGGWCCY	2 cut(s)	64, 674
PscI	ACATGT	1 cut(s)	1071
Psp124BI	GAGCTC	1 cut(s)	1509
Psp5II	RGGWCCY	2 cut(s)	64, 674
Psp6I	CCWGG	3 cut(s)	1800, 1867, 1999
PspFI	CCCAGC	1 cut(s)	1604
PspGI	CCWGG	3 cut(s)	1800, 1867, 1999
PspN4I	GGNNCC	3 cut(s)	112, 675, 1998
PspPI	GGNCC	3 cut(s)	64, 286, 674
PspPPI	RGGWCCY	2 cut(s)	64, 674
PsuI	RGATCY	1 cut(s)	1959
PsyI	GACNNNGTC	1 cut(s)	218
RsaI	GTAC	3 cut(s)	1173, 1321, 1830
RsaNI	GTAC	3 cut(s)	1172, 1320, 1829
SacI	GAGCTC	1 cut(s)	1509
SacII	CCGCGG	1 cut(s)	654
SaqAI	TTAA	6 cut(s)	411, 456, 1326, 1682, 1983, 1992
SatI	GCNGC	2 cut(s)	357, 1194
Sau3AI	GATC	3 cut(s)	23, 1651, 1959
Sau96I	GGNCC	3 cut(s)	64, 286, 674
SchI	GAGTC	3 cut(s)	13, 1646, 1903
ScrFI	CCNGG	4 cut(s)	323, 1802, 1869, 2001
SduI	GDGCHC	3 cut(s)	988, 1366, 1509
SfaNI	GCATC	9 cut(s)	478, 594, 787, 1090, 1509, 1668, 1797, 1917, 1939
SfcI	CTRYAG	2 cut(s)	970, 1873
Sfr303I	CCGCGG	1 cut(s)	654
SfuI	TTCGAA	1 cut(s)	195
SgrBI	CCGCGG	1 cut(s)	654
SinI	GGWCC	3 cut(s)	64, 286, 674
SmlI	CTYRAG	1 cut(s)	1022
SmoI	CTYRAG	1 cut(s)	1022
SphI	GCATGC	1 cut(s)	304
Sse9I	AATT	8 cut(s)	523, 832, 1037, 1346, 1353, 1544, 1712, 2045
SsiI	CCGC	9 cut(s)	304, 387, 651, 653, 671, 716, 1600, 1810, 1825
SspMI	CTAG	3 cut(s)	479, 1502, 1757
SstI	GAGCTC	1 cut(s)	1509
StyD4I	CCNGG	4 cut(s)	321, 1800, 1867, 1999
StyI	CCWWGG	1 cut(s)	1559
TaaI	ACNGT	4 cut(s)	403, 570, 819, 1988
TaiI	ACGT	4 cut(s)	159, 219, 496, 1776
TaqI	TCGA	4 cut(s)	195, 295, 1693, 1849
TasI	AATT	8 cut(s)	523, 832, 1037, 1346, 1353, 1544, 1712, 2045
TatI	WGTACW	1 cut(s)	1171
TfiI	GAWTC	6 cut(s)	326, 881, 1335, 1705, 1760, 2075
Tru1I	TTAA	6 cut(s)	411, 456, 1326, 1682, 1983, 1992
Tru9I	TTAA	6 cut(s)	411, 456, 1326, 1682, 1983, 1992
TscAI	CASTG	3 cut(s)	824, 988, 1993
TseFI	GTSAC	3 cut(s)	14, 763, 974
TseI	GCWGC	2 cut(s)	356, 1193
Tsp45I	GTSAC	3 cut(s)	14, 763, 974
TspGWI	ACGGA	1 cut(s)	1846
TspRI	CASTG	3 cut(s)	824, 988, 1993
Tth111I	GACNNNGTC	1 cut(s)	218
VpaK11BI	GGWCC	3 cut(s)	64, 286, 674
XapI	RAATTY	5 cut(s)	523, 832, 1037, 1346, 1544
XbaI	TCTAGA	1 cut(s)	1501
XceI	RCATGY	4 cut(s)	304, 916, 1075, 1275
XmiI	GTMKAC	1 cut(s)	126
XspI	CTAG	3 cut(s)	479, 1502, 1757
Zsp2I	ATGCAT	2 cut(s)	918, 1932

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.