Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003024

Physical Location & Seq

Genomic Coordinates Reverse (-)

5174473 .. 5181914

Gene Structure 7442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G045800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGATGACATACGCAGCCTCAGCTTCAAGGCCACTGTGTCCTATTAATGGTGCTTCACAAACCCAAGTACCGATTTCAACCATTGTGAAGAGCAGTGGTCTTAATAGCAGTAGCACTAGTATTAGTTGTCGTAGAAGGAGCAAAGGCGTGTGTGTAATTAAGGCCTTAAAAAGCTCGTCGCCCACAAGACAGACCTTGTCGAGCAATTGGGATTTTCAGACAGCAACTACGTCATCTCCACGGCTGCCCAGATTCGAAGAGCTGGATACTACCAATATGCTTCTCCGTCAGAGAATCATCTTTCTGGGTTCTCAGGTAGATGACATGACAGCAGATTTGATTATAAGCCAGCTTCTATTTCTAGATGCTGAGGACCCAAAAAAGGACATTAAAATGTTTATCAATTCACCTGGTGGTTCTGTTACCGCTGGAATGGGAATATATGATGCAATGAAATTGTGCAAGGCAGATGTTTCAACAGTTTGTCTGGGGCTTGCTGCTTCTATGGGGGCATTTCTCCTTGCTGCTGGTACAAAAGGAAAAAGATTCTGCATGCCCAATGCAAGAGTGATGATCCATCAACCTCTTGGAACTGCAGGGGGCAAAGCAACAGACATGGGTATACGAATTAGAGAAATGGTGTACCACAAGATTAAATTGAACAAAATATTTTCAAGAATCACAGGGAAGCCTTTGGAGCAGATTGAAGAGGACACGGACCGTGATAATTTCATGAATCCTTGGGAAGCCAAGGACTATGGGTTGATTGATGTAGTTATTGATGATGGAAAGCCAGGCTTAGTTGCCCCAATTGGAGATTCCATAACTCCGCCCAGAACACGAGTTTGGGATCAGTGGAAAGTTGAAGGGACCAGGAAAGCCAGAAAGAATTTGCCCTCAGAGCAAAGGATTTCGGATAATGGATATAAAGAGACTGAAGGAAGTGACAATGAGAAAGGAGCCGAGAGGGAAAAGGAAGAACCTGCCGCTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009368 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009840 GO:0009941 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

332

Amino Acids

36.28

Weight (kDa)

8.93

Isoelectric Point (pI)

37.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66670
fragaria_vesca	FvH4_7g04110
malus_domestica	MD02G1275200.v1.1 MD07G1043100.v1.1
prunus_persica	Prupe.2G045800_v2.0.a1 Prupe.2G045800_v2.0.a1 Prupe.2G045800_v2.0.a1
pyrus_communis	pycom02g23530 pycom07g03020
rosa_chinensis	RchiOBHm_Chr1g0327981 RchiOBHm_Chr1g0372191
rosa_laevigata	RLG00000008647 RLG00000012938 RLG00000021509 RLG00000029950
rosa_multiflora	Rmu_sc0000064.1_g000027 Rmu_sc0000272.1_g000043 Rmu_sc0001755.1_g000019 Rmu_sc0003977.1_g000001 Rmu_sc0007782.1_g000018 Rmu_ssc0000309.1_g000031
rosa_roxburghii	Rroxscaffold_4G00322040
rosa_rugosa	Rorug01G0073100
rosa_samantha	Rh1AG089900 Rh1BG071800 Rh1BG342100 Rh1CG086900 Rh1DG093600 Rh2BG432000 Rh2CG303000 Rh6AG065100 Rh6AG270700 Rh6BG088100 Rh6DG224400 Rh7DG308700
rosa_wichuraiana	Rw0G022860 Rw1G006940 Rw1G006960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	344
Acc36I	ACCTGC	1 cut(s)	991
AccI	GTMKAC	1 cut(s)	622
AciI	CCGC	3 cut(s)	426, 830, 987
AclWI	GGATC	2 cut(s)	568, 858
AcsI	RAATTY	1 cut(s)	889
AcuI	CTGAAG	1 cut(s)	957
AdeI	CACNNNGTG	1 cut(s)	413
AfaI	GTAC	3 cut(s)	69, 532, 644
AfiI	CCNNNNNNNGG	2 cut(s)	47, 382
AgsI	TTSAA	7 cut(s)	27, 78, 477, 661, 675, 707, 866
AhlI	ACTAGT	1 cut(s)	116
AjnI	CCWGG	3 cut(s)	409, 793, 872
AjuI	GAANNNNNNNTTGG	4 cut(s)	802, 829, 834, 861
AluBI	AGCT	4 cut(s)	23, 174, 262, 352
AluI	AGCT	4 cut(s)	23, 174, 262, 352
Alw26I	GTCTC	1 cut(s)	926
AlwI	GGATC	2 cut(s)	568, 858
AoxI	GGCC	2 cut(s)	29, 162
ApeKI	GCWGC	4 cut(s)	14, 244, 497, 524
ApoI	RAATTY	1 cut(s)	889
ArsI	GACNNNNNNTTYG	2 cut(s)	319, 351
AseI	ATTAAT	1 cut(s)	45
AspS9I	GGNCC	3 cut(s)	373, 718, 870
AsuHPI	GGTGA	1 cut(s)	399
AsuII	TTCGAA	1 cut(s)	255
AvaII	GGWCC	3 cut(s)	373, 718, 870
BaeI	ACNNNNGTAYC	2 cut(s)	51, 84
BauI	CACGAG	1 cut(s)	840
BbvCI	CCTCAGC	2 cut(s)	19, 369
BbvI	GCAGC	4 cut(s)	26, 231, 484, 511
BccI	CCATC	2 cut(s)	585, 779
BceAI	ACGGC	1 cut(s)	257
BciT130I	CCWGG	3 cut(s)	411, 795, 874
BciVI	GTATCC	1 cut(s)	259
BcoDI	GTCTC	1 cut(s)	926
BcuI	ACTAGT	1 cut(s)	116
BfaI	CTAG	2 cut(s)	117, 362
BfmI	CTRYAG	1 cut(s)	594
BfuAI	ACCTGC	1 cut(s)	991
BfuI	GTATCC	1 cut(s)	259
BisI	GCNGC	5 cut(s)	15, 245, 498, 525, 987
BlsI	GCNGC	5 cut(s)	16, 246, 499, 526, 988
Bme1390I	CCNGG	3 cut(s)	411, 795, 874
Bme18I	GGWCC	3 cut(s)	373, 718, 870
BmgT120I	GGNCC	3 cut(s)	373, 718, 870
BmiI	GGNNCC	3 cut(s)	375, 871, 961
BmrFI	CCNGG	3 cut(s)	411, 795, 874
BmsI	GCATC	2 cut(s)	355, 436
Bpu10I	CCTNAGC	2 cut(s)	19, 369
Bpu14I	TTCGAA	1 cut(s)	255
BsaJI	CCNNGG	3 cut(s)	239, 740, 750
BsaXI	ACNNNNNCTCC	2 cut(s)	220, 250
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 382
Bse3DI	GCAATG	1 cut(s)	456
BseBI	CCWGG	3 cut(s)	411, 795, 874
BseDI	CCNNGG	3 cut(s)	239, 740, 750
BseLI	CCNNNNNNNGG	2 cut(s)	47, 382
BseMI	GCAATG	1 cut(s)	456
BseMII	CTCAG	4 cut(s)	33, 326, 360, 912
BseXI	GCAGC	4 cut(s)	26, 231, 484, 511
BshFI	GGCC	2 cut(s)	31, 164
BslFI	GGGAC	1 cut(s)	883
BslI	CCNNNNNNNGG	2 cut(s)	47, 382
BsmAI	GTCTC	1 cut(s)	926
BsmFI	GGGAC	1 cut(s)	883
BsnI	GGCC	2 cut(s)	31, 164
Bsp119I	TTCGAA	1 cut(s)	255
Bsp143I	GATC	2 cut(s)	573, 850
BspACI	CCGC	3 cut(s)	426, 830, 987
BspANI	GGCC	2 cut(s)	31, 164
BspCNI	CTCAG	4 cut(s)	32, 325, 361, 911
BspHI	TCATGA	1 cut(s)	732
BspLI	GGNNCC	3 cut(s)	375, 871, 961
BspMAI	CTGCAG	1 cut(s)	598
BspMI	ACCTGC	1 cut(s)	991
BspPI	GGATC	2 cut(s)	568, 858
BspQI	GCTCTTC	2 cut(s)	83, 252
BspT104I	TTCGAA	1 cut(s)	255
BsrDI	GCAATG	1 cut(s)	456
BssECI	CCNNGG	3 cut(s)	239, 740, 750
BssMI	GATC	2 cut(s)	573, 850
BssNAI	GTATAC	1 cut(s)	623
BssSI	CACGAG	1 cut(s)	840
BssT1I	CCWWGG	2 cut(s)	740, 750
Bst1107I	GTATAC	1 cut(s)	623
Bst2BI	CACGAG	1 cut(s)	840
Bst2UI	CCWGG	3 cut(s)	411, 795, 874
Bst4CI	ACNGT	3 cut(s)	36, 481, 722
Bst6I	CTCTTC	3 cut(s)	83, 252, 702
BstBI	TTCGAA	1 cut(s)	255
BstC8I	GCNNGC	3 cut(s)	350, 495, 554
BstDEI	CTNAG	5 cut(s)	19, 312, 369, 799, 898
BstDSI	CCRYGG	1 cut(s)	239
BstKTI	GATC	2 cut(s)	576, 853
BstMAI	GTCTC	1 cut(s)	926
BstMBI	GATC	2 cut(s)	573, 850
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 697, 901
BstNI	CCWGG	3 cut(s)	411, 795, 874
BstNSI	RCATGY	1 cut(s)	556
BstSCI	CCNGG	3 cut(s)	409, 793, 872
BstSFI	CTRYAG	1 cut(s)	594
BstV1I	GCAGC	4 cut(s)	26, 231, 484, 511
BstZ17I	GTATAC	1 cut(s)	623
BsuI	GTATCC	1 cut(s)	259
BsuRI	GGCC	2 cut(s)	31, 164
BtgI	CCRYGG	1 cut(s)	239
BtsI	GCAGTG	1 cut(s)	100
BtsIMutI	CAGTG	3 cut(s)	32, 100, 860
BveI	ACCTGC	1 cut(s)	991
Cac8I	GCNNGC	3 cut(s)	350, 495, 554
CciI	TCATGA	1 cut(s)	732
Cfr13I	GGNCC	3 cut(s)	373, 718, 870
CpoI	CGGWCCG	1 cut(s)	718
CsiI	ACCWGGT	1 cut(s)	409
Csp6I	GTAC	3 cut(s)	68, 531, 643
CspI	CGGWCCG	1 cut(s)	718
CviAII	CATG	4 cut(s)	325, 553, 616, 733
CviQI	GTAC	3 cut(s)	68, 531, 643
DdeI	CTNAG	5 cut(s)	19, 312, 369, 799, 898
DpnI	GATC	2 cut(s)	575, 852
DpnII	GATC	2 cut(s)	573, 850
DraIII	CACNNNGTG	1 cut(s)	413
Eam1104I	CTCTTC	3 cut(s)	83, 252, 702
EarI	CTCTTC	3 cut(s)	83, 252, 702
EciI	GGCGGA	1 cut(s)	819
Eco130I	CCWWGG	2 cut(s)	740, 750
Eco147I	AGGCCT	1 cut(s)	164
Eco47I	GGWCC	3 cut(s)	373, 718, 870
Eco57I	CTGAAG	1 cut(s)	957
EcoO109I	RGGNCCY	1 cut(s)	373
EcoRII	CCWGG	3 cut(s)	409, 793, 872
EcoT14I	CCWWGG	2 cut(s)	740, 750
ErhI	CCWWGG	2 cut(s)	740, 750
FaeI	CATG	4 cut(s)	328, 556, 619, 736
FalI	AAGNNNNNCTT	2 cut(s)	782, 814
FaqI	GGGAC	1 cut(s)	883
FatI	CATG	4 cut(s)	324, 552, 615, 732
FblI	GTMKAC	1 cut(s)	622
Fnu4HI	GCNGC	5 cut(s)	15, 245, 498, 525, 987
Fsp4HI	GCNGC	5 cut(s)	15, 245, 498, 525, 987
FspBI	CTAG	2 cut(s)	117, 362
GluI	GCNGC	5 cut(s)	15, 245, 498, 525, 987
HaeIII	GGCC	2 cut(s)	31, 164
Hin1II	CATG	4 cut(s)	328, 556, 619, 736
HinfI	GANTC	6 cut(s)	252, 294, 546, 678, 736, 818
HphI	GGTGA	1 cut(s)	399
Hpy166II	GTNNAC	2 cut(s)	623, 643
Hpy188I	TCNGA	4 cut(s)	219, 291, 901, 916
Hpy188III	TCNNGA	3 cut(s)	362, 675, 733
Hpy8I	GTNNAC	2 cut(s)	623, 643
Hpy99I	CGWCG	1 cut(s)	181
HpyAV	CCTTC	3 cut(s)	129, 860, 932
HpyCH4III	ACNGT	3 cut(s)	36, 481, 722
HpyCH4IV	ACGT	1 cut(s)	230
HpyCH4V	TGCA	5 cut(s)	449, 462, 552, 563, 596
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 697, 901
HpyF3I	CTNAG	5 cut(s)	19, 312, 369, 799, 898
HpySE526I	ACGT	1 cut(s)	230
Hsp92II	CATG	4 cut(s)	328, 556, 619, 736
Kzo9I	GATC	2 cut(s)	573, 850
LguI	GCTCTTC	2 cut(s)	83, 252
LmnI	GCTCC	3 cut(s)	138, 697, 959
Lsp1109I	GCAGC	4 cut(s)	26, 231, 484, 511
LweI	GCATC	2 cut(s)	355, 436
MabI	ACCWGGT	1 cut(s)	409
MaeI	CTAG	2 cut(s)	117, 362
MaeII	ACGT	1 cut(s)	230
MaeIII	GTNAC	2 cut(s)	421, 944
MalI	GATC	2 cut(s)	575, 852
MboI	GATC	2 cut(s)	573, 850
MboII	GAAGA	4 cut(s)	100, 269, 719, 989
MfeI	CAATTG	2 cut(s)	205, 810
MluCI	AATT	9 cut(s)	156, 205, 403, 455, 627, 656, 727, 810, 889
MnlI	CCTC	6 cut(s)	28, 364, 594, 703, 907, 960
MseI	TTAA	6 cut(s)	45, 102, 159, 167, 390, 654
MslI	CAYNNNNRTG	1 cut(s)	392
MspA1I	CMGCKG	1 cut(s)	428
MspR9I	CCNGG	3 cut(s)	411, 795, 874
MunI	CAATTG	2 cut(s)	205, 810
MvaI	CCWGG	3 cut(s)	411, 795, 874
MwoI	GCNNNNNNNGC	3 cut(s)	20, 697, 901
NdeII	GATC	2 cut(s)	573, 850
NlaIII	CATG	4 cut(s)	328, 556, 619, 736
NlaIV	GGNNCC	3 cut(s)	375, 871, 961
NmeAIII	GCCGAG	1 cut(s)	988
NmuCI	GTSAC	1 cut(s)	944
NspI	RCATGY	1 cut(s)	556
NspV	TTCGAA	1 cut(s)	255
PaeI	GCATGC	1 cut(s)	556
PagI	TCATGA	1 cut(s)	732
PceI	AGGCCT	1 cut(s)	164
PciSI	GCTCTTC	2 cut(s)	83, 252
PfeI	GAWTC	6 cut(s)	252, 294, 546, 678, 736, 818
PflFI	GACNNNGTC	1 cut(s)	196
PkrI	GCNGC	5 cut(s)	16, 246, 499, 526, 988
PpuMI	RGGWCCY	1 cut(s)	373
PshBI	ATTAAT	1 cut(s)	45
PsiI	TTATAA	1 cut(s)	344
Psp5II	RGGWCCY	1 cut(s)	373
Psp6I	CCWGG	3 cut(s)	409, 793, 872
PspGI	CCWGG	3 cut(s)	409, 793, 872
PspN4I	GGNNCC	3 cut(s)	375, 871, 961
PspPI	GGNCC	3 cut(s)	373, 718, 870
PspPPI	RGGWCCY	1 cut(s)	373
PstI	CTGCAG	1 cut(s)	598
PsyI	GACNNNGTC	1 cut(s)	196
RsaI	GTAC	3 cut(s)	69, 532, 644
RsaNI	GTAC	3 cut(s)	68, 531, 643
RseI	CAYNNNNRTG	1 cut(s)	392
Rsr2I	CGGWCCG	1 cut(s)	718
RsrII	CGGWCCG	1 cut(s)	718
SapI	GCTCTTC	2 cut(s)	83, 252
SaqAI	TTAA	6 cut(s)	45, 102, 159, 167, 390, 654
SatI	GCNGC	5 cut(s)	15, 245, 498, 525, 987
Sau3AI	GATC	2 cut(s)	573, 850
Sau96I	GGNCC	3 cut(s)	373, 718, 870
ScrFI	CCNGG	3 cut(s)	411, 795, 874
SexAI	ACCWGGT	1 cut(s)	409
SfaNI	GCATC	2 cut(s)	355, 436
SfcI	CTRYAG	1 cut(s)	594
SfuI	TTCGAA	1 cut(s)	255
SinI	GGWCC	3 cut(s)	373, 718, 870
SmiMI	CAYNNNNRTG	1 cut(s)	392
SpeI	ACTAGT	1 cut(s)	116
SphI	GCATGC	1 cut(s)	556
Sse9I	AATT	9 cut(s)	156, 205, 403, 455, 627, 656, 727, 810, 889
SseBI	AGGCCT	1 cut(s)	164
SsiI	CCGC	3 cut(s)	426, 830, 987
SspI	AATATT	1 cut(s)	669
SspMI	CTAG	2 cut(s)	117, 362
StuI	AGGCCT	1 cut(s)	164
StyD4I	CCNGG	3 cut(s)	409, 793, 872
StyI	CCWWGG	2 cut(s)	740, 750
TaaI	ACNGT	3 cut(s)	36, 481, 722
TaiI	ACGT	1 cut(s)	233
TaqI	TCGA	2 cut(s)	200, 255
TasI	AATT	9 cut(s)	156, 205, 403, 455, 627, 656, 727, 810, 889
TauI	GCSGC	1 cut(s)	989
TfiI	GAWTC	6 cut(s)	252, 294, 546, 678, 736, 818
Tru1I	TTAA	6 cut(s)	45, 102, 159, 167, 390, 654
Tru9I	TTAA	6 cut(s)	45, 102, 159, 167, 390, 654
TscAI	CASTG	3 cut(s)	39, 100, 860
TseFI	GTSAC	1 cut(s)	944
TseI	GCWGC	4 cut(s)	14, 244, 497, 524
Tsp45I	GTSAC	1 cut(s)	944
TspDTI	ATGAA	3 cut(s)	467, 721, 749
TspGWI	ACGGA	2 cut(s)	275, 731
TspRI	CASTG	3 cut(s)	39, 100, 860
Tth111I	GACNNNGTC	1 cut(s)	196
VpaK11BI	GGWCC	3 cut(s)	373, 718, 870
VspI	ATTAAT	1 cut(s)	45
XapI	RAATTY	1 cut(s)	889
XbaI	TCTAGA	1 cut(s)	361
XceI	RCATGY	1 cut(s)	556
XcmI	CCANNNNNNNNNTGG	1 cut(s)	584
XmiI	GTMKAC	1 cut(s)	622
XspI	CTAG	2 cut(s)	117, 362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.