Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000309.1

Orthogroup ID

OG0003024

Physical Location & Seq

Genomic Coordinates Forward (+)

110532 .. 110915

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000309.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atgatgacatatggagcctcagctacaaggcctctctgcttcaatacccaaccggccattgtcaagagcaatggtcttaatagcactagcgcttctagtatcatcgattgcagcacaacaacaaggaggaggcgcgtcagtctggttagagcctcgtcgcctacaagacccaccttgtccagcaattgggattttcatttcgccgctactactactacttcagttacacgcgtccccaaattcaaagagctcgataccaccaacatgctcctccgtcagagaatcatcttcttgggttctcacgtttcattttcatttgaattattgaaatgggttttggaaaatcttgtgaatttttgtactctcgtgtttgttggaagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009368 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009840 GO:0009941 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

127

Amino Acids

14.16

Weight (kDa)

10.5

Isoelectric Point (pI)

29.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66670
fragaria_vesca	FvH4_7g04110
malus_domestica	MD02G1275200.v1.1 MD07G1043100.v1.1
prunus_persica	Prupe.2G045800_v2.0.a1 Prupe.2G045800_v2.0.a1 Prupe.2G045800_v2.0.a1
pyrus_communis	pycom02g23530 pycom07g03020
rosa_chinensis	RchiOBHm_Chr1g0327981 RchiOBHm_Chr1g0372191
rosa_laevigata	RLG00000008647 RLG00000012938 RLG00000021509 RLG00000029950
rosa_multiflora	Rmu_sc0000064.1_g000027 Rmu_sc0000272.1_g000043 Rmu_sc0001755.1_g000019 Rmu_sc0003977.1_g000001 Rmu_sc0007782.1_g000018 Rmu_ssc0000309.1_g000031
rosa_roxburghii	Rroxscaffold_4G00322040
rosa_rugosa	Rorug01G0073100
rosa_samantha	Rh1AG089900 Rh1BG071800 Rh1BG342100 Rh1CG086900 Rh1DG093600 Rh2BG432000 Rh2CG303000 Rh6AG065100 Rh6AG270700 Rh6BG088100 Rh6DG224400 Rh7DG308700
rosa_wichuraiana	Rw0G022860 Rw1G006940 Rw1G006960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	186
AccII	CGCG	2 cut(s)	135, 231
AciI	CCGC	1 cut(s)	204
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	2 cut(s)	239, 352
AcuI	CTGAAG	1 cut(s)	204
AfaI	GTAC	1 cut(s)	361
AfeI	AGCGCT	1 cut(s)	91
AfiI	CCNNNNNNNGG	1 cut(s)	186
AflIII	ACRYGT	1 cut(s)	229
AgsI	TTSAA	4 cut(s)	43, 244, 320, 328
AjuI	GAANNNNNNNTTGG	2 cut(s)	320, 352
AluBI	AGCT	3 cut(s)	23, 250, 381
AluI	AGCT	3 cut(s)	23, 250, 381
Alw21I	GWGCWC	1 cut(s)	252
Aor51HI	AGCGCT	1 cut(s)	91
AoxI	GGCC	2 cut(s)	29, 54
ApeKI	GCWGC	1 cut(s)	111
ApoI	RAATTY	2 cut(s)	239, 352
AspLEI	GCGC	2 cut(s)	92, 135
BanII	GRGCYC	1 cut(s)	252
BauI	CACGAG	1 cut(s)	365
Bbv12I	GWGCWC	1 cut(s)	252
BbvCI	CCTCAGC	1 cut(s)	19
BbvI	GCAGC	1 cut(s)	123
BfaI	CTAG	2 cut(s)	87, 96
BfoI	RGCGCY	1 cut(s)	93
BisI	GCNGC	2 cut(s)	112, 204
BlsI	GCNGC	2 cut(s)	113, 205
BmiI	GGNNCC	1 cut(s)	16
Bpu10I	CCTNAGC	1 cut(s)	19
Bsa29I	ATCGAT	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse118I	RCCGGY	1 cut(s)	52
Bse3DI	GCAATG	1 cut(s)	76
BseCI	ATCGAT	1 cut(s)	105
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseMI	GCAATG	1 cut(s)	76
BseMII	CTCAG	1 cut(s)	33
BseRI	GAGGAG	2 cut(s)	142, 260
BseXI	GCAGC	1 cut(s)	123
Bsh1236I	CGCG	2 cut(s)	135, 231
BshFI	GGCC	2 cut(s)	31, 56
BshVI	ATCGAT	1 cut(s)	105
BsiHKAI	GWGCWC	1 cut(s)	252
BsiSI	CCGG	1 cut(s)	53
BslFI	GGGAC	1 cut(s)	218
BslI	CCNNNNNNNGG	1 cut(s)	186
BsmFI	GGGAC	1 cut(s)	218
BsnI	GGCC	2 cut(s)	31, 56
Bsp1286I	GDGCHC	1 cut(s)	252
BspACI	CCGC	1 cut(s)	204
BspANI	GGCC	2 cut(s)	31, 56
BspCNI	CTCAG	1 cut(s)	32
BspDI	ATCGAT	1 cut(s)	105
BspFNI	CGCG	2 cut(s)	135, 231
BspLI	GGNNCC	1 cut(s)	16
BsrDI	GCAATG	1 cut(s)	76
BsrFI	RCCGGY	1 cut(s)	52
BssAI	RCCGGY	1 cut(s)	52
BssSI	CACGAG	1 cut(s)	365
Bst2BI	CACGAG	1 cut(s)	365
BstDEI	CTNAG	1 cut(s)	19
BstFNI	CGCG	2 cut(s)	135, 231
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	2 cut(s)	92, 135
BstNSI	RCATGY	1 cut(s)	268
BstUI	CGCG	2 cut(s)	135, 231
BstV1I	GCAGC	1 cut(s)	123
Bsu15I	ATCGAT	1 cut(s)	105
BsuRI	GGCC	2 cut(s)	31, 56
BsuTUI	ATCGAT	1 cut(s)	105
CfoI	GCGC	2 cut(s)	92, 135
Cfr10I	RCCGGY	1 cut(s)	52
ClaI	ATCGAT	1 cut(s)	105
CseI	GACGC	2 cut(s)	124, 220
Csp6I	GTAC	1 cut(s)	360
CviAII	CATG	1 cut(s)	265
CviJI	RGCY	7 cut(s)	17, 23, 31, 56, 152, 250, 381
CviKI_1	RGCY	7 cut(s)	17, 23, 31, 56, 152, 250, 381
CviQI	GTAC	1 cut(s)	360
DdeI	CTNAG	1 cut(s)	19
EaeI	YGGCCR	1 cut(s)	54
Ecl136II	GAGCTC	1 cut(s)	250
Eco147I	AGGCCT	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	252
Eco47III	AGCGCT	1 cut(s)	91
Eco53kI	GAGCTC	1 cut(s)	250
Eco57I	CTGAAG	1 cut(s)	204
EcoICRI	GAGCTC	1 cut(s)	250
EcoT38I	GRGCYC	1 cut(s)	252
FaeI	CATG	1 cut(s)	268
FaiI	YATR	3 cut(s)	10, 12, 266
FaqI	GGGAC	1 cut(s)	218
FatI	CATG	1 cut(s)	264
FauNDI	CATATG	1 cut(s)	10
Fnu4HI	GCNGC	2 cut(s)	112, 204
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	2 cut(s)	112, 204
FspBI	CTAG	2 cut(s)	87, 96
GlaI	GCGC	2 cut(s)	91, 134
GluI	GCNGC	2 cut(s)	112, 204
HaeII	RGCGCY	1 cut(s)	93
HaeIII	GGCC	2 cut(s)	31, 56
HapII	CCGG	1 cut(s)	53
HgaI	GACGC	2 cut(s)	124, 220
HhaI	GCGC	2 cut(s)	92, 135
Hin1II	CATG	1 cut(s)	268
Hin6I	GCGC	2 cut(s)	90, 133
HinP1I	GCGC	2 cut(s)	90, 133
HinfI	GANTC	1 cut(s)	282
HpaII	CCGG	1 cut(s)	53
Hpy188I	TCNGA	1 cut(s)	279
Hpy188III	TCNNGA	1 cut(s)	64
Hpy99I	CGWCG	1 cut(s)	160
HpyCH4IV	ACGT	1 cut(s)	303
HpyCH4V	TGCA	1 cut(s)	111
HpyF3I	CTNAG	1 cut(s)	19
HpySE526I	ACGT	1 cut(s)	303
Hsp92II	CATG	1 cut(s)	268
HspAI	GCGC	2 cut(s)	90, 133
LmnI	GCTCC	2 cut(s)	14, 273
LpnPI	CCDG	3 cut(s)	66, 128, 193
Lsp1109I	GCAGC	1 cut(s)	123
MaeI	CTAG	2 cut(s)	87, 96
MaeII	ACGT	1 cut(s)	303
MaeIII	GTNAC	1 cut(s)	223
MboII	GAAGA	1 cut(s)	280
MfeI	CAATTG	1 cut(s)	184
MhlI	GDGCHC	1 cut(s)	252
MluCI	AATT	4 cut(s)	184, 239, 320, 352
MluI	ACGCGT	1 cut(s)	229
MmeI	TCCRAC	1 cut(s)	355
MnlI	CCTC	6 cut(s)	28, 42, 120, 123, 163, 281
MseI	TTAA	1 cut(s)	78
MslI	CAYNNNNRTG	1 cut(s)	263
MspI	CCGG	1 cut(s)	53
MunI	CAATTG	1 cut(s)	184
MvnI	CGCG	2 cut(s)	135, 231
NdeI	CATATG	1 cut(s)	10
NlaIII	CATG	1 cut(s)	268
NlaIV	GGNNCC	1 cut(s)	16
NspI	RCATGY	1 cut(s)	268
PceI	AGGCCT	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	282
PflMI	CCANNNNNTGG	1 cut(s)	186
PkrI	GCNGC	2 cut(s)	113, 205
Psp124BI	GAGCTC	1 cut(s)	252
PspN4I	GGNNCC	1 cut(s)	16
RsaI	GTAC	1 cut(s)	361
RsaNI	GTAC	1 cut(s)	360
RseI	CAYNNNNRTG	1 cut(s)	263
SacI	GAGCTC	1 cut(s)	252
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	2 cut(s)	112, 204
SduI	GDGCHC	1 cut(s)	252
SetI	ASST	5 cut(s)	25, 176, 252, 306, 383
SmiMI	CAYNNNNRTG	1 cut(s)	263
Sse9I	AATT	4 cut(s)	184, 239, 320, 352
SseBI	AGGCCT	1 cut(s)	31
SsiI	CCGC	1 cut(s)	204
SspMI	CTAG	2 cut(s)	87, 96
SstI	GAGCTC	1 cut(s)	252
StuI	AGGCCT	1 cut(s)	31
TaiI	ACGT	1 cut(s)	306
TaqI	TCGA	2 cut(s)	105, 252
TasI	AATT	4 cut(s)	184, 239, 320, 352
TatI	WGTACW	1 cut(s)	359
TauI	GCSGC	1 cut(s)	206
TfiI	GAWTC	1 cut(s)	282
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TseI	GCWGC	1 cut(s)	111
TspDTI	ATGAA	3 cut(s)	185, 297, 303
TspGWI	ACGGA	1 cut(s)	263
Van91I	CCANNNNNTGG	1 cut(s)	186
XapI	RAATTY	2 cut(s)	239, 352
XceI	RCATGY	1 cut(s)	268
XspI	CTAG	2 cut(s)	87, 96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.