Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003024

Physical Location & Seq

Genomic Coordinates Forward (+)

9565669 .. 9565923

Gene Structure 255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG065100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGATCGGAAGCTCAAGGTATGCAATCTCAGATTGGAGCTCCGATATGCAATCTCAGATCCCGACGGATTCAAATCGGAGCTCAGATACGCAATCTCAGATCCCGGCGGTGGGAACGAGGCCGAAGCTGCAAGAAGAGGTTGGAGTTACCTTCGAAGGCGGAGACGATGTCATCGCTGTCGTTATTGGACCTGACGCCGGAGCCGTAAGGCCAGGTGGTTTTGCGACACTAGAGCTCGCATACCAGATCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

84

Amino Acids

8.89

Weight (kDa)

4.14

Isoelectric Point (pI)

53.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66670
fragaria_vesca	FvH4_7g04110
malus_domestica	MD02G1275200.v1.1 MD07G1043100.v1.1
prunus_persica	Prupe.2G045800_v2.0.a1 Prupe.2G045800_v2.0.a1 Prupe.2G045800_v2.0.a1
pyrus_communis	pycom02g23530 pycom07g03020
rosa_chinensis	RchiOBHm_Chr1g0327981 RchiOBHm_Chr1g0372191
rosa_laevigata	RLG00000008647 RLG00000012938 RLG00000021509 RLG00000029950
rosa_multiflora	Rmu_sc0000064.1_g000027 Rmu_sc0000272.1_g000043 Rmu_sc0001755.1_g000019 Rmu_sc0003977.1_g000001 Rmu_sc0007782.1_g000018 Rmu_ssc0000309.1_g000031
rosa_roxburghii	Rroxscaffold_4G00322040
rosa_rugosa	Rorug01G0073100
rosa_samantha	Rh1AG089900 Rh1BG071800 Rh1BG342100 Rh1CG086900 Rh1DG093600 Rh2BG432000 Rh2CG303000 Rh6AG065100 Rh6AG270700 Rh6BG088100 Rh6DG224400 Rh7DG308700
rosa_wichuraiana	Rw0G022860 Rw1G006940 Rw1G006960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	107, 159
AclWI	GGATC	2 cut(s)	52, 94
AcyI	GRCGYC	1 cut(s)	195
AfiI	CCNNNNNNNGG	3 cut(s)	109, 110, 197
AgsI	TTSAA	1 cut(s)	72
AjnI	CCWGG	1 cut(s)	211
AluBI	AGCT	5 cut(s)	12, 39, 81, 127, 235
AluI	AGCT	5 cut(s)	12, 39, 81, 127, 235
Alw21I	GWGCWC	3 cut(s)	41, 83, 237
Alw26I	GTCTC	1 cut(s)	156
AlwI	GGATC	2 cut(s)	52, 94
AoxI	GGCC	2 cut(s)	119, 209
ApeKI	GCWGC	1 cut(s)	127
AspS9I	GGNCC	1 cut(s)	188
AsuC2I	CCSGG	1 cut(s)	104
AsuII	TTCGAA	1 cut(s)	153
AvaII	GGWCC	1 cut(s)	188
BanII	GRGCYC	3 cut(s)	41, 83, 237
Bbv12I	GWGCWC	3 cut(s)	41, 83, 237
BbvI	GCAGC	1 cut(s)	114
BceAI	ACGGC	1 cut(s)	188
BciT130I	CCWGG	1 cut(s)	213
BcnI	CCSGG	1 cut(s)	104
BcoDI	GTCTC	1 cut(s)	156
BfaI	CTAG	2 cut(s)	230, 253
BglII	AGATCT	1 cut(s)	246
BisI	GCNGC	1 cut(s)	128
BlsI	GCNGC	1 cut(s)	129
Bme1390I	CCNGG	2 cut(s)	104, 213
Bme18I	GGWCC	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	188
BmiI	GGNNCC	1 cut(s)	202
BmrFI	CCNGG	2 cut(s)	104, 213
Bpu14I	TTCGAA	1 cut(s)	153
BpuMI	CCSGG	1 cut(s)	104
BsaBI	GATNNNNATC	1 cut(s)	72
BsaHI	GRCGYC	1 cut(s)	195
BsaXI	ACNNNNNCTCC	2 cut(s)	153, 183
Bsc4I	CCNNNNNNNGG	3 cut(s)	109, 110, 197
Bse8I	GATNNNNATC	1 cut(s)	72
BseBI	CCWGG	1 cut(s)	213
BseJI	GATNNNNATC	1 cut(s)	72
BseLI	CCNNNNNNNGG	3 cut(s)	109, 110, 197
BseMII	CTCAG	4 cut(s)	42, 68, 96, 110
BseXI	GCAGC	1 cut(s)	114
BshFI	GGCC	2 cut(s)	121, 211
BsiHKAI	GWGCWC	3 cut(s)	41, 83, 237
BsiSI	CCGG	2 cut(s)	104, 198
BslI	CCNNNNNNNGG	3 cut(s)	109, 110, 197
BsmAI	GTCTC	1 cut(s)	156
BsmBI	CGTCTC	1 cut(s)	156
BsnI	GGCC	2 cut(s)	121, 211
Bsp119I	TTCGAA	1 cut(s)	153
Bsp1286I	GDGCHC	3 cut(s)	41, 83, 237
Bsp143I	GATC	4 cut(s)	3, 57, 99, 246
BspACI	CCGC	2 cut(s)	107, 159
BspANI	GGCC	2 cut(s)	121, 211
BspCNI	CTCAG	4 cut(s)	41, 67, 95, 109
BspLI	GGNNCC	1 cut(s)	202
BspPI	GGATC	2 cut(s)	52, 94
BspT104I	TTCGAA	1 cut(s)	153
BssMI	GATC	4 cut(s)	3, 57, 99, 246
BssNI	GRCGYC	1 cut(s)	195
Bst2UI	CCWGG	1 cut(s)	213
Bst6I	CTCTTC	1 cut(s)	129
BstACI	GRCGYC	1 cut(s)	195
BstBI	TTCGAA	1 cut(s)	153
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	4 cut(s)	28, 54, 82, 96
BstKTI	GATC	4 cut(s)	6, 60, 102, 249
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	4 cut(s)	3, 57, 99, 246
BstMWI	GCNNNNNNNGC	1 cut(s)	127
BstNI	CCWGG	1 cut(s)	213
BstSCI	CCNGG	2 cut(s)	102, 211
BstV1I	GCAGC	1 cut(s)	114
BstX2I	RGATCY	3 cut(s)	57, 99, 246
BstYI	RGATCY	3 cut(s)	57, 99, 246
BsuRI	GGCC	2 cut(s)	121, 211
BtgZI	GCGATG	1 cut(s)	157
Cac8I	GCNNGC	1 cut(s)	237
Cfr13I	GGNCC	1 cut(s)	188
CseI	GACGC	1 cut(s)	203
CviJI	RGCY	8 cut(s)	12, 39, 81, 121, 127, 203, 211, 235
CviKI_1	RGCY	8 cut(s)	12, 39, 81, 121, 127, 203, 211, 235
DdeI	CTNAG	4 cut(s)	28, 54, 82, 96
DpnI	GATC	4 cut(s)	5, 59, 101, 248
DpnII	GATC	4 cut(s)	3, 57, 99, 246
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
EciI	GGCGGA	1 cut(s)	174
Ecl136II	GAGCTC	3 cut(s)	39, 81, 235
Eco24I	GRGCYC	3 cut(s)	41, 83, 237
Eco47I	GGWCC	1 cut(s)	188
Eco53kI	GAGCTC	3 cut(s)	39, 81, 235
EcoICRI	GAGCTC	3 cut(s)	39, 81, 235
EcoRII	CCWGG	1 cut(s)	211
EcoT38I	GRGCYC	3 cut(s)	41, 83, 237
Esp3I	CGTCTC	1 cut(s)	156
FaiI	YATR	3 cut(s)	21, 47, 241
Fnu4HI	GCNGC	1 cut(s)	128
FriOI	GRGCYC	3 cut(s)	41, 83, 237
Fsp4HI	GCNGC	1 cut(s)	128
FspBI	CTAG	2 cut(s)	230, 253
GluI	GCNGC	1 cut(s)	128
HaeIII	GGCC	2 cut(s)	121, 211
HapII	CCGG	2 cut(s)	104, 198
HgaI	GACGC	1 cut(s)	203
Hin1I	GRCGYC	1 cut(s)	195
HinfI	GANTC	1 cut(s)	68
HpaII	CCGG	2 cut(s)	104, 198
Hpy188I	TCNGA	7 cut(s)	8, 31, 43, 57, 78, 85, 99
Hpy188III	TCNNGA	1 cut(s)	61
Hpy99I	CGWCG	1 cut(s)	67
HpyAV	CCTTC	2 cut(s)	149, 160
HpyCH4V	TGCA	3 cut(s)	23, 49, 130
HpyF10VI	GCNNNNNNNGC	1 cut(s)	127
HpyF3I	CTNAG	4 cut(s)	28, 54, 82, 96
Hsp92I	GRCGYC	1 cut(s)	195
Kzo9I	GATC	4 cut(s)	3, 57, 99, 246
LmnI	GCTCC	4 cut(s)	36, 44, 78, 200
LpnPI	CCDG	5 cut(s)	117, 198, 204, 211, 225
Lsp1109I	GCAGC	1 cut(s)	114
MaeI	CTAG	2 cut(s)	230, 253
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	4 cut(s)	5, 59, 101, 248
MboI	GATC	4 cut(s)	3, 57, 99, 246
MboII	GAAGA	2 cut(s)	146, 241
MflI	RGATCY	3 cut(s)	57, 99, 246
MhlI	GDGCHC	3 cut(s)	41, 83, 237
MmeI	TCCRAC	1 cut(s)	121
MnlI	CCTC	2 cut(s)	111, 130
MspI	CCGG	2 cut(s)	104, 198
MspR9I	CCNGG	2 cut(s)	104, 213
MvaI	CCWGG	1 cut(s)	213
MwoI	GCNNNNNNNGC	1 cut(s)	127
NciI	CCSGG	1 cut(s)	104
NdeII	GATC	4 cut(s)	3, 57, 99, 246
NlaIV	GGNNCC	1 cut(s)	202
NspV	TTCGAA	1 cut(s)	153
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PfeI	GAWTC	1 cut(s)	68
PflFI	GACNNNGTC	1 cut(s)	167
PkrI	GCNGC	1 cut(s)	129
Psp124BI	GAGCTC	3 cut(s)	41, 83, 237
Psp6I	CCWGG	1 cut(s)	211
PspGI	CCWGG	1 cut(s)	211
PspN4I	GGNNCC	1 cut(s)	202
PspPI	GGNCC	1 cut(s)	188
PsuI	RGATCY	3 cut(s)	57, 99, 246
PsyI	GACNNNGTC	1 cut(s)	167
SacI	GAGCTC	3 cut(s)	41, 83, 237
SatI	GCNGC	1 cut(s)	128
Sau3AI	GATC	4 cut(s)	3, 57, 99, 246
Sau96I	GGNCC	1 cut(s)	188
ScrFI	CCNGG	2 cut(s)	104, 213
SduI	GDGCHC	3 cut(s)	41, 83, 237
SfuI	TTCGAA	1 cut(s)	153
SinI	GGWCC	1 cut(s)	188
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
SsiI	CCGC	2 cut(s)	107, 159
SspMI	CTAG	2 cut(s)	230, 253
SstI	GAGCTC	3 cut(s)	41, 83, 237
StyD4I	CCNGG	2 cut(s)	102, 211
TaqI	TCGA	1 cut(s)	153
TfiI	GAWTC	1 cut(s)	68
TseI	GCWGC	1 cut(s)	127
TspGWI	ACGGA	1 cut(s)	80
Tth111I	GACNNNGTC	1 cut(s)	167
VpaK11BI	GGWCC	1 cut(s)	188
XspI	CTAG	2 cut(s)	230, 253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.