Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003024

Physical Location & Seq

Genomic Coordinates Forward (+)

46422213 .. 46422840

Gene Structure 628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG270700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGATGACATATGGAGCCTCAGCTTCAAGGCCTCTCTGCTTCAACACCCAACCGGCCAATGTCAAGAGCAATGGTCTTAATAGCACTAGTGCTTCTAGTATCATCGATTGCAGCACAACAACAAGGAGGAGGCGCGTCGGTCTGGTTAGAGCCTCGTCACCTACAAGACTCACAAGACCCACCTTGTCCAGCAATTGGGATTTTCATTTCGCCACTACTACTAATACTTCAGTTCCACGCGCCCCAGATTCAAAGAGCTCGATACCACCAACATGCTCCTCCATCAGAGAATCATCTTCTTGGGTTCTCATGTTTCATTTTCATTTGAATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009368 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009840 GO:0009941 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

111

Amino Acids

12.22

Weight (kDa)

10.8

Isoelectric Point (pI)

44.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66670
fragaria_vesca	FvH4_7g04110
malus_domestica	MD02G1275200.v1.1 MD07G1043100.v1.1
prunus_persica	Prupe.2G045800_v2.0.a1 Prupe.2G045800_v2.0.a1 Prupe.2G045800_v2.0.a1
pyrus_communis	pycom02g23530 pycom07g03020
rosa_chinensis	RchiOBHm_Chr1g0327981 RchiOBHm_Chr1g0372191
rosa_laevigata	RLG00000008647 RLG00000012938 RLG00000021509 RLG00000029950
rosa_multiflora	Rmu_sc0000064.1_g000027 Rmu_sc0000272.1_g000043 Rmu_sc0001755.1_g000019 Rmu_sc0003977.1_g000001 Rmu_sc0007782.1_g000018 Rmu_ssc0000309.1_g000031
rosa_roxburghii	Rroxscaffold_4G00322040
rosa_rugosa	Rorug01G0073100
rosa_samantha	Rh1AG089900 Rh1BG071800 Rh1BG342100 Rh1CG086900 Rh1DG093600 Rh2BG432000 Rh2CG303000 Rh6AG065100 Rh6AG270700 Rh6BG088100 Rh6DG224400 Rh7DG308700
rosa_wichuraiana	Rw0G022860 Rw1G006940 Rw1G006960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	195
AccII	CGCG	2 cut(s)	135, 240
AcoI	YGGCCR	1 cut(s)	54
AcuI	CTGAAG	1 cut(s)	213
AfiI	CCNNNNNNNGG	1 cut(s)	195
AgsI	TTSAA	4 cut(s)	27, 43, 252, 328
AhlI	ACTAGT	1 cut(s)	86
AluBI	AGCT	2 cut(s)	23, 258
AluI	AGCT	2 cut(s)	23, 258
Alw21I	GWGCWC	1 cut(s)	260
AoxI	GGCC	2 cut(s)	29, 54
ApeKI	GCWGC	1 cut(s)	111
AspLEI	GCGC	2 cut(s)	135, 242
AsuHPI	GGTGA	1 cut(s)	150
BanII	GRGCYC	1 cut(s)	260
Bbv12I	GWGCWC	1 cut(s)	260
BbvCI	CCTCAGC	1 cut(s)	19
BbvI	GCAGC	1 cut(s)	123
BccI	CCATC	1 cut(s)	290
BcuI	ACTAGT	1 cut(s)	86
BfaI	CTAG	2 cut(s)	87, 96
BisI	GCNGC	1 cut(s)	112
BlsI	GCNGC	1 cut(s)	113
BmiI	GGNNCC	1 cut(s)	16
Bpu10I	CCTNAGC	1 cut(s)	19
Bsa29I	ATCGAT	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	1 cut(s)	195
Bse118I	RCCGGY	1 cut(s)	52
Bse3DI	GCAATG	1 cut(s)	76
BseCI	ATCGAT	1 cut(s)	105
BseLI	CCNNNNNNNGG	1 cut(s)	195
BseMI	GCAATG	1 cut(s)	76
BseMII	CTCAG	1 cut(s)	33
BseRI	GAGGAG	2 cut(s)	142, 268
BseXI	GCAGC	1 cut(s)	123
Bsh1236I	CGCG	2 cut(s)	135, 240
BshFI	GGCC	2 cut(s)	31, 56
BshVI	ATCGAT	1 cut(s)	105
BsiHKAI	GWGCWC	1 cut(s)	260
BsiSI	CCGG	1 cut(s)	53
BslI	CCNNNNNNNGG	1 cut(s)	195
BsnI	GGCC	2 cut(s)	31, 56
Bsp1286I	GDGCHC	1 cut(s)	260
BspANI	GGCC	2 cut(s)	31, 56
BspCNI	CTCAG	1 cut(s)	32
BspDI	ATCGAT	1 cut(s)	105
BspFNI	CGCG	2 cut(s)	135, 240
BspLI	GGNNCC	1 cut(s)	16
BsrDI	GCAATG	1 cut(s)	76
BsrFI	RCCGGY	1 cut(s)	52
BssAI	RCCGGY	1 cut(s)	52
BstDEI	CTNAG	1 cut(s)	19
BstFNI	CGCG	2 cut(s)	135, 240
BstHHI	GCGC	2 cut(s)	135, 242
BstNSI	RCATGY	1 cut(s)	276
BstUI	CGCG	2 cut(s)	135, 240
BstV1I	GCAGC	1 cut(s)	123
Bsu15I	ATCGAT	1 cut(s)	105
BsuRI	GGCC	2 cut(s)	31, 56
BsuTUI	ATCGAT	1 cut(s)	105
CfoI	GCGC	2 cut(s)	135, 242
Cfr10I	RCCGGY	1 cut(s)	52
ClaI	ATCGAT	1 cut(s)	105
CseI	GACGC	1 cut(s)	124
CviAII	CATG	2 cut(s)	273, 310
CviJI	RGCY	6 cut(s)	17, 23, 31, 56, 152, 258
CviKI_1	RGCY	6 cut(s)	17, 23, 31, 56, 152, 258
DdeI	CTNAG	1 cut(s)	19
EaeI	YGGCCR	1 cut(s)	54
Ecl136II	GAGCTC	1 cut(s)	258
Eco147I	AGGCCT	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	260
Eco53kI	GAGCTC	1 cut(s)	258
Eco57I	CTGAAG	1 cut(s)	213
EcoICRI	GAGCTC	1 cut(s)	258
EcoT38I	GRGCYC	1 cut(s)	260
FaeI	CATG	2 cut(s)	276, 313
FaiI	YATR	4 cut(s)	10, 12, 274, 311
FatI	CATG	2 cut(s)	272, 309
FauNDI	CATATG	1 cut(s)	10
Fnu4HI	GCNGC	1 cut(s)	112
FriOI	GRGCYC	1 cut(s)	260
Fsp4HI	GCNGC	1 cut(s)	112
FspBI	CTAG	2 cut(s)	87, 96
GlaI	GCGC	2 cut(s)	134, 241
GluI	GCNGC	1 cut(s)	112
HaeIII	GGCC	2 cut(s)	31, 56
HapII	CCGG	1 cut(s)	53
HgaI	GACGC	1 cut(s)	124
HhaI	GCGC	2 cut(s)	135, 242
Hin1II	CATG	2 cut(s)	276, 313
Hin6I	GCGC	2 cut(s)	133, 240
HinP1I	GCGC	2 cut(s)	133, 240
HinfI	GANTC	3 cut(s)	168, 248, 290
HpaII	CCGG	1 cut(s)	53
HphI	GGTGA	1 cut(s)	150
Hpy188I	TCNGA	1 cut(s)	287
Hpy188III	TCNNGA	1 cut(s)	64
Hpy99I	CGWCG	1 cut(s)	140
HpyCH4V	TGCA	1 cut(s)	111
HpyF3I	CTNAG	1 cut(s)	19
Hsp92II	CATG	2 cut(s)	276, 313
HspAI	GCGC	2 cut(s)	133, 240
LmnI	GCTCC	2 cut(s)	14, 281
LpnPI	CCDG	4 cut(s)	66, 128, 202, 258
Lsp1109I	GCAGC	1 cut(s)	123
MaeI	CTAG	2 cut(s)	87, 96
MaeIII	GTNAC	1 cut(s)	156
MboII	GAAGA	1 cut(s)	288
MfeI	CAATTG	1 cut(s)	193
MhlI	GDGCHC	1 cut(s)	260
MluCI	AATT	2 cut(s)	193, 328
MlyI	GAGTC	1 cut(s)	162
MnlI	CCTC	6 cut(s)	28, 42, 120, 123, 163, 289
MseI	TTAA	1 cut(s)	78
MslI	CAYNNNNRTG	1 cut(s)	271
MspI	CCGG	1 cut(s)	53
MunI	CAATTG	1 cut(s)	193
MvnI	CGCG	2 cut(s)	135, 240
NdeI	CATATG	1 cut(s)	10
NlaIII	CATG	2 cut(s)	276, 313
NlaIV	GGNNCC	1 cut(s)	16
NmuCI	GTSAC	1 cut(s)	156
NspI	RCATGY	1 cut(s)	276
PceI	AGGCCT	1 cut(s)	31
PfeI	GAWTC	2 cut(s)	248, 290
PflMI	CCANNNNNTGG	1 cut(s)	195
PkrI	GCNGC	1 cut(s)	113
PleI	GAGTC	1 cut(s)	162
PpsI	GAGTC	1 cut(s)	162
Psp124BI	GAGCTC	1 cut(s)	260
PspN4I	GGNNCC	1 cut(s)	16
RseI	CAYNNNNRTG	1 cut(s)	271
SacI	GAGCTC	1 cut(s)	260
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	1 cut(s)	112
SchI	GAGTC	1 cut(s)	162
SduI	GDGCHC	1 cut(s)	260
SetI	ASST	4 cut(s)	25, 163, 185, 260
SmiMI	CAYNNNNRTG	1 cut(s)	271
SpeI	ACTAGT	1 cut(s)	86
Sse9I	AATT	2 cut(s)	193, 328
SseBI	AGGCCT	1 cut(s)	31
SspMI	CTAG	2 cut(s)	87, 96
SstI	GAGCTC	1 cut(s)	260
StuI	AGGCCT	1 cut(s)	31
TaqI	TCGA	2 cut(s)	105, 260
TaqII	GACCGA	1 cut(s)	128
TasI	AATT	2 cut(s)	193, 328
TfiI	GAWTC	2 cut(s)	248, 290
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TseFI	GTSAC	1 cut(s)	156
TseI	GCWGC	1 cut(s)	111
Tsp45I	GTSAC	1 cut(s)	156
TspDTI	ATGAA	3 cut(s)	194, 305, 311
Van91I	CCANNNNNTGG	1 cut(s)	195
XceI	RCATGY	1 cut(s)	276
XspI	CTAG	2 cut(s)	87, 96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.