Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003024

Physical Location & Seq

Genomic Coordinates Reverse (-)

61263325 .. 61263957

Gene Structure 633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG432000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGTCGTCGTTACGCTATGATAAGACAACACATCGCATACCATCTTTGCAACTAAAAATCAGAAACCGTTTCAACACTCACCAGTTTCAGAATCAAAAATCCAATCTGTTCTATACCAAAACTCAAAAGAATACTCCTACTTTTGCATATAGATCACTCGATTACTCCATTTCACCAAACATTTCTATCAAAATCATCAATGTTCTTATACATTATAATCAAAACCCTAAAACCCCAAACATTTCACTCCACCAGGAGATTCTGCAGCCGCCGACGACTTTGAAAGCATCGACAGCTTCATATCTCAGCCTCCAGATCAGAGCCGCTCGTCGGAGAACGACTTGGCTTCAAAATTTGAGCTCCTGGCCACCAGGCTCGATGATCAGAAGCTCATGGTATGCAATCTCAGATTGGAGCTCAGATATGCAATCTCAGATCCCGACAGATTCAAATTGGAGCTCAGATACACAATCTCAGATCCCGGCGGTGGGAACGAGGCTGAAGCTGCAAGAAAAGGTTGGAGTTACCTTCGAAGGCGGAGACGATGTCGTCCCTGTCGTTATTGGACCTGACACCGGAGCCGTAAGGCCAGGTGGTTTTACGACACTGGAGCTCGCATACCAGATCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

210

Amino Acids

23.81

Weight (kDa)

9.89

Isoelectric Point (pI)

55.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66670
fragaria_vesca	FvH4_7g04110
malus_domestica	MD02G1275200.v1.1 MD07G1043100.v1.1
prunus_persica	Prupe.2G045800_v2.0.a1 Prupe.2G045800_v2.0.a1 Prupe.2G045800_v2.0.a1
pyrus_communis	pycom02g23530 pycom07g03020
rosa_chinensis	RchiOBHm_Chr1g0327981 RchiOBHm_Chr1g0372191
rosa_laevigata	RLG00000008647 RLG00000012938 RLG00000021509 RLG00000029950
rosa_multiflora	Rmu_sc0000064.1_g000027 Rmu_sc0000272.1_g000043 Rmu_sc0001755.1_g000019 Rmu_sc0003977.1_g000001 Rmu_sc0007782.1_g000018 Rmu_ssc0000309.1_g000031
rosa_roxburghii	Rroxscaffold_4G00322040
rosa_rugosa	Rorug01G0073100
rosa_samantha	Rh1AG089900 Rh1BG071800 Rh1BG342100 Rh1CG086900 Rh1DG093600 Rh2BG432000 Rh2CG303000 Rh6AG065100 Rh6AG270700 Rh6BG088100 Rh6DG224400 Rh7DG308700
rosa_wichuraiana	Rw0G022860 Rw1G006940 Rw1G006960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	216
AasI	GACNNNNNNGTC	1 cut(s)	548
AccBSI	CCGCTC	1 cut(s)	326
AciI	CCGC	4 cut(s)	269, 324, 485, 537
AclWI	GGATC	2 cut(s)	430, 472
AcoI	YGGCCR	1 cut(s)	365
AcsI	RAATTY	1 cut(s)	352
AcuI	CTGAAG	1 cut(s)	521
AfiI	CCNNNNNNNGG	4 cut(s)	330, 487, 488, 575
AgsI	TTSAA	4 cut(s)	73, 283, 350, 450
AjnI	CCWGG	4 cut(s)	252, 362, 370, 589
AluBI	AGCT	7 cut(s)	296, 360, 390, 417, 459, 505, 613
AluI	AGCT	7 cut(s)	296, 360, 390, 417, 459, 505, 613
Alw21I	GWGCWC	4 cut(s)	362, 419, 461, 615
Alw26I	GTCTC	1 cut(s)	534
AlwI	GGATC	2 cut(s)	430, 472
AoxI	GGCC	2 cut(s)	365, 587
ApeKI	GCWGC	2 cut(s)	265, 505
ApoI	RAATTY	1 cut(s)	352
AspS9I	GGNCC	1 cut(s)	566
AsuC2I	CCSGG	1 cut(s)	482
AsuHPI	GGTGA	2 cut(s)	71, 165
AsuII	TTCGAA	1 cut(s)	531
AvaII	GGWCC	1 cut(s)	566
BalI	TGGCCA	1 cut(s)	367
BanII	GRGCYC	4 cut(s)	362, 419, 461, 615
Bbv12I	GWGCWC	4 cut(s)	362, 419, 461, 615
BbvI	GCAGC	2 cut(s)	277, 492
BccI	CCATC	1 cut(s)	49
BceAI	ACGGC	1 cut(s)	566
BciT130I	CCWGG	4 cut(s)	254, 364, 372, 591
BclI	TGATCA	1 cut(s)	381
BcnI	CCSGG	1 cut(s)	482
BcoDI	GTCTC	1 cut(s)	534
BfaI	CTAG	1 cut(s)	631
BfmI	CTRYAG	1 cut(s)	263
BglII	AGATCT	1 cut(s)	624
BisI	GCNGC	4 cut(s)	266, 269, 324, 506
BlsI	GCNGC	4 cut(s)	267, 270, 325, 507
Bme1390I	CCNGG	5 cut(s)	254, 364, 372, 482, 591
Bme18I	GGWCC	1 cut(s)	566
BmgT120I	GGNCC	1 cut(s)	566
BmiI	GGNNCC	1 cut(s)	580
BmrFI	CCNGG	5 cut(s)	254, 364, 372, 482, 591
BmsI	GCATC	1 cut(s)	296
BpmI	CTGGAG	2 cut(s)	296, 629
Bpu14I	TTCGAA	1 cut(s)	531
BpuMI	CCSGG	1 cut(s)	482
BsaWI	WCCGGW	1 cut(s)	575
BsaXI	ACNNNNNCTCC	2 cut(s)	531, 561
Bsc4I	CCNNNNNNNGG	4 cut(s)	330, 487, 488, 575
Bse1I	ACTGG	2 cut(s)	82, 612
BseBI	CCWGG	4 cut(s)	254, 364, 372, 591
BseLI	CCNNNNNNNGG	4 cut(s)	330, 487, 488, 575
BseMII	CTCAG	6 cut(s)	319, 420, 432, 446, 474, 488
BseNI	ACTGG	2 cut(s)	82, 612
BseXI	GCAGC	2 cut(s)	277, 492
BshFI	GGCC	2 cut(s)	367, 589
BsiHKAI	GWGCWC	4 cut(s)	362, 419, 461, 615
BsiSI	CCGG	2 cut(s)	482, 576
BslFI	GGGAC	1 cut(s)	536
BslI	CCNNNNNNNGG	4 cut(s)	330, 487, 488, 575
BsmAI	GTCTC	1 cut(s)	534
BsmBI	CGTCTC	1 cut(s)	534
BsmFI	GGGAC	1 cut(s)	536
BsnI	GGCC	2 cut(s)	367, 589
Bsp119I	TTCGAA	1 cut(s)	531
Bsp1286I	GDGCHC	4 cut(s)	362, 419, 461, 615
Bsp143I	GATC	6 cut(s)	152, 315, 381, 435, 477, 624
BspACI	CCGC	4 cut(s)	269, 324, 485, 537
BspANI	GGCC	2 cut(s)	367, 589
BspCNI	CTCAG	6 cut(s)	318, 419, 431, 445, 473, 487
BspLI	GGNNCC	1 cut(s)	580
BspMAI	CTGCAG	1 cut(s)	267
BspPI	GGATC	2 cut(s)	430, 472
BspT104I	TTCGAA	1 cut(s)	531
BsrBI	CCGCTC	1 cut(s)	326
BsrI	ACTGG	2 cut(s)	82, 612
BssMI	GATC	6 cut(s)	152, 315, 381, 435, 477, 624
Bst2UI	CCWGG	4 cut(s)	254, 364, 372, 591
Bst4CI	ACNGT	1 cut(s)	68
BstBI	TTCGAA	1 cut(s)	531
BstC8I	GCNNGC	1 cut(s)	615
BstDEI	CTNAG	6 cut(s)	305, 406, 418, 432, 460, 474
BstKTI	GATC	6 cut(s)	155, 318, 384, 438, 480, 627
BstMAI	GTCTC	1 cut(s)	534
BstMBI	GATC	6 cut(s)	152, 315, 381, 435, 477, 624
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 505
BstNI	CCWGG	4 cut(s)	254, 364, 372, 591
BstSCI	CCNGG	5 cut(s)	252, 362, 370, 480, 589
BstSFI	CTRYAG	1 cut(s)	263
BstV1I	GCAGC	2 cut(s)	277, 492
BstX2I	RGATCY	3 cut(s)	435, 477, 624
BstYI	RGATCY	3 cut(s)	435, 477, 624
BsuRI	GGCC	2 cut(s)	367, 589
BtgZI	GCGATG	1 cut(s)	17
BtsIMutI	CAGTG	1 cut(s)	605
Cac8I	GCNNGC	1 cut(s)	615
Cfr13I	GGNCC	1 cut(s)	566
CviAII	CATG	1 cut(s)	393
DdeI	CTNAG	6 cut(s)	305, 406, 418, 432, 460, 474
DpnI	GATC	6 cut(s)	154, 317, 383, 437, 479, 626
DpnII	GATC	6 cut(s)	152, 315, 381, 435, 477, 624
DrdI	GACNNNNNNGTC	1 cut(s)	548
DseDI	GACNNNNNNGTC	1 cut(s)	548
EaeI	YGGCCR	1 cut(s)	365
EciI	GGCGGA	1 cut(s)	552
Ecl136II	GAGCTC	4 cut(s)	360, 417, 459, 613
Eco24I	GRGCYC	4 cut(s)	362, 419, 461, 615
Eco47I	GGWCC	1 cut(s)	566
Eco53kI	GAGCTC	4 cut(s)	360, 417, 459, 613
Eco57I	CTGAAG	1 cut(s)	521
EcoICRI	GAGCTC	4 cut(s)	360, 417, 459, 613
EcoRII	CCWGG	4 cut(s)	252, 362, 370, 589
EcoT38I	GRGCYC	4 cut(s)	362, 419, 461, 615
Esp3I	CGTCTC	1 cut(s)	534
FaeI	CATG	1 cut(s)	396
FaqI	GGGAC	1 cut(s)	536
FatI	CATG	1 cut(s)	392
FbaI	TGATCA	1 cut(s)	381
Fnu4HI	GCNGC	4 cut(s)	266, 269, 324, 506
FriOI	GRGCYC	4 cut(s)	362, 419, 461, 615
Fsp4HI	GCNGC	4 cut(s)	266, 269, 324, 506
FspBI	CTAG	1 cut(s)	631
GluI	GCNGC	4 cut(s)	266, 269, 324, 506
GsuI	CTGGAG	2 cut(s)	296, 629
HaeIII	GGCC	2 cut(s)	367, 589
HapII	CCGG	2 cut(s)	482, 576
Hin1II	CATG	1 cut(s)	396
HinfI	GANTC	3 cut(s)	91, 259, 446
HpaII	CCGG	2 cut(s)	482, 576
HphI	GGTGA	2 cut(s)	71, 165
Hpy188III	TCNNGA	2 cut(s)	313, 439
Hpy99I	CGWCG	3 cut(s)	10, 277, 333
HpyAV	CCTTC	2 cut(s)	527, 538
HpyCH4III	ACNGT	1 cut(s)	68
HpyCH4V	TGCA	6 cut(s)	49, 146, 265, 401, 427, 508
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 505
HpyF3I	CTNAG	6 cut(s)	305, 406, 418, 432, 460, 474
Hsp92II	CATG	1 cut(s)	396
Ksp22I	TGATCA	1 cut(s)	381
Kzo9I	GATC	6 cut(s)	152, 315, 381, 435, 477, 624
LmnI	GCTCC	5 cut(s)	365, 414, 456, 578, 610
Lsp1109I	GCAGC	2 cut(s)	277, 492
LweI	GCATC	1 cut(s)	296
MaeI	CTAG	1 cut(s)	631
MaeIII	GTNAC	2 cut(s)	9, 523
MalI	GATC	6 cut(s)	154, 317, 383, 437, 479, 626
MbiI	CCGCTC	1 cut(s)	326
MboI	GATC	6 cut(s)	152, 315, 381, 435, 477, 624
MboII	GAAGA	1 cut(s)	619
MflI	RGATCY	3 cut(s)	435, 477, 624
MhlI	GDGCHC	4 cut(s)	362, 419, 461, 615
MlsI	TGGCCA	1 cut(s)	367
MluCI	AATT	2 cut(s)	352, 451
MluNI	TGGCCA	1 cut(s)	367
MmeI	TCCRAC	2 cut(s)	311, 499
MnlI	CCTC	2 cut(s)	320, 489
Mox20I	TGGCCA	1 cut(s)	367
MscI	TGGCCA	1 cut(s)	367
Msp20I	TGGCCA	1 cut(s)	367
MspI	CCGG	2 cut(s)	482, 576
MspR9I	CCNGG	5 cut(s)	254, 364, 372, 482, 591
MvaI	CCWGG	4 cut(s)	254, 364, 372, 591
MwoI	GCNNNNNNNGC	2 cut(s)	293, 505
NciI	CCSGG	1 cut(s)	482
NdeII	GATC	6 cut(s)	152, 315, 381, 435, 477, 624
NlaIII	CATG	1 cut(s)	396
NlaIV	GGNNCC	1 cut(s)	580
NspV	TTCGAA	1 cut(s)	531
PcsI	WCGNNNNNNNCGW	1 cut(s)	555
PfeI	GAWTC	3 cut(s)	91, 259, 446
PflFI	GACNNNGTC	1 cut(s)	545
PkrI	GCNGC	4 cut(s)	267, 270, 325, 507
PsiI	TTATAA	1 cut(s)	216
Psp124BI	GAGCTC	4 cut(s)	362, 419, 461, 615
Psp6I	CCWGG	4 cut(s)	252, 362, 370, 589
PspGI	CCWGG	4 cut(s)	252, 362, 370, 589
PspN4I	GGNNCC	1 cut(s)	580
PspPI	GGNCC	1 cut(s)	566
PstI	CTGCAG	1 cut(s)	267
PsuI	RGATCY	3 cut(s)	435, 477, 624
PsyI	GACNNNGTC	1 cut(s)	545
SacI	GAGCTC	4 cut(s)	362, 419, 461, 615
SatI	GCNGC	4 cut(s)	266, 269, 324, 506
Sau3AI	GATC	6 cut(s)	152, 315, 381, 435, 477, 624
Sau96I	GGNCC	1 cut(s)	566
ScrFI	CCNGG	5 cut(s)	254, 364, 372, 482, 591
SduI	GDGCHC	4 cut(s)	362, 419, 461, 615
SfaNI	GCATC	1 cut(s)	296
SfcI	CTRYAG	1 cut(s)	263
SfuI	TTCGAA	1 cut(s)	531
SinI	GGWCC	1 cut(s)	566
Sse9I	AATT	2 cut(s)	352, 451
SsiI	CCGC	4 cut(s)	269, 324, 485, 537
SspMI	CTAG	1 cut(s)	631
SstI	GAGCTC	4 cut(s)	362, 419, 461, 615
StyD4I	CCNGG	5 cut(s)	252, 362, 370, 480, 589
TaaI	ACNGT	1 cut(s)	68
TaqI	TCGA	4 cut(s)	159, 290, 377, 531
TasI	AATT	2 cut(s)	352, 451
TauI	GCSGC	2 cut(s)	271, 326
TfiI	GAWTC	3 cut(s)	91, 259, 446
TscAI	CASTG	1 cut(s)	612
TseI	GCWGC	2 cut(s)	265, 505
TspDTI	ATGAA	1 cut(s)	288
TspRI	CASTG	1 cut(s)	612
Tth111I	GACNNNGTC	1 cut(s)	545
VpaK11BI	GGWCC	1 cut(s)	566
XapI	RAATTY	1 cut(s)	352
XspI	CTAG	1 cut(s)	631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.