Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0003024

Physical Location & Seq

Genomic Coordinates Forward (+)

47560290 .. 47563684

Gene Structure 3395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG342100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGATGACATACGCAGCCTCAGCTTCAAGGCCTTTCTGCATCAACACCCAATCGGCCATTGTCAAGAGCAATGGTCTTAATAGCACTAGCGCTTCTAGTATCATCGATTGCAACACAACAACAAGGAGGAAGCGCGTCGATCTGGTTAAAGCCTCGTTGCCTACAAGACCCACCTTGTCCAGCAATTGGGATTTTCAGTTCGTCGCTACTACTACTACTTCAGCTCCGCGCGTCCCCAGATTCGAAGAGCTCGATACCACCAACATGTTCCTCCGTCAGAGAATCATCTTCTTGGCTGGTATCTATTACCTTCCACCGAGGAAAGCTCTATGTCGTGGCTGTCTCGCCGAGAATGGGAGAGCTAGAGTGGTCGATTCTTCTTCTTCAATGAAGACGATAACTATTGCGTCCCCAGTAAGTGGTGGGGAGAGCTATAGTGGTCGATTCTTCTTCTTCAATGAACCGGTAACTATTACCTTCCACCGAGGAAAGTTCTATGTCATCGCCGTCTCGCCGAGAATGGGAGAGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009368 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009840 GO:0009941 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

177

Amino Acids

19.62

Weight (kDa)

10.1

Isoelectric Point (pI)

39.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66670
fragaria_vesca	FvH4_7g04110
malus_domestica	MD02G1275200.v1.1 MD07G1043100.v1.1
prunus_persica	Prupe.2G045800_v2.0.a1 Prupe.2G045800_v2.0.a1 Prupe.2G045800_v2.0.a1
pyrus_communis	pycom02g23530 pycom07g03020
rosa_chinensis	RchiOBHm_Chr1g0327981 RchiOBHm_Chr1g0372191
rosa_laevigata	RLG00000008647 RLG00000012938 RLG00000021509 RLG00000029950
rosa_multiflora	Rmu_sc0000064.1_g000027 Rmu_sc0000272.1_g000043 Rmu_sc0001755.1_g000019 Rmu_sc0003977.1_g000001 Rmu_sc0007782.1_g000018 Rmu_ssc0000309.1_g000031
rosa_roxburghii	Rroxscaffold_4G00322040
rosa_rugosa	Rorug01G0073100
rosa_samantha	Rh1AG089900 Rh1BG071800 Rh1BG342100 Rh1CG086900 Rh1DG093600 Rh2BG432000 Rh2CG303000 Rh6AG065100 Rh6AG270700 Rh6BG088100 Rh6DG224400 Rh7DG308700
rosa_wichuraiana	Rw0G022860 Rw1G006940 Rw1G006960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	186, 419
AccII	CGCG	3 cut(s)	135, 229, 231
AciI	CCGC	1 cut(s)	227
AcoI	YGGCCR	1 cut(s)	54
AcuI	CTGAAG	1 cut(s)	204
AfeI	AGCGCT	1 cut(s)	91
AfiI	CCNNNNNNNGG	4 cut(s)	186, 354, 419, 521
AflIII	ACRYGT	1 cut(s)	264
AgeI	ACCGGT	1 cut(s)	463
AgsI	TTSAA	3 cut(s)	27, 387, 457
AloI	GAACNNNNNNTCC	2 cut(s)	182, 214
AluBI	AGCT	7 cut(s)	23, 224, 250, 326, 362, 432, 529
AluI	AGCT	7 cut(s)	23, 224, 250, 326, 362, 432, 529
Alw21I	GWGCWC	1 cut(s)	252
Alw26I	GTCTC	2 cut(s)	347, 514
Aor51HI	AGCGCT	1 cut(s)	91
AoxI	GGCC	2 cut(s)	29, 54
ApeKI	GCWGC	1 cut(s)	14
AsiGI	ACCGGT	1 cut(s)	463
AspLEI	GCGC	3 cut(s)	92, 135, 231
AsuII	TTCGAA	1 cut(s)	243
BanII	GRGCYC	1 cut(s)	252
BbsI	GAAGAC	1 cut(s)	398
Bbv12I	GWGCWC	1 cut(s)	252
BbvCI	CCTCAGC	1 cut(s)	19
BbvI	GCAGC	1 cut(s)	26
BceAI	ACGGC	1 cut(s)	491
BcoDI	GTCTC	2 cut(s)	347, 514
BfaI	CTAG	3 cut(s)	87, 96, 363
BfmI	CTRYAG	2 cut(s)	433, 530
BfoI	RGCGCY	1 cut(s)	93
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
BmrI	ACTGGG	1 cut(s)	407
BmsI	GCATC	1 cut(s)	48
BmuI	ACTGGG	1 cut(s)	407
BpiI	GAAGAC	1 cut(s)	398
BplI	GAGNNNNNCTC	2 cut(s)	310, 342
Bpu10I	CCTNAGC	1 cut(s)	19
Bpu14I	TTCGAA	1 cut(s)	243
Bsa29I	ATCGAT	1 cut(s)	105
BsaJI	CCNNGG	2 cut(s)	317, 484
BsaWI	WCCGGW	1 cut(s)	463
BsaXI	ACNNNNNCTCC	2 cut(s)	208, 238
Bsc4I	CCNNNNNNNGG	4 cut(s)	186, 354, 419, 521
Bse118I	RCCGGY	1 cut(s)	463
Bse1I	ACTGG	1 cut(s)	413
Bse3DI	GCAATG	1 cut(s)	76
BseCI	ATCGAT	1 cut(s)	105
BseDI	CCNNGG	2 cut(s)	317, 484
BseLI	CCNNNNNNNGG	4 cut(s)	186, 354, 419, 521
BseMI	GCAATG	1 cut(s)	76
BseMII	CTCAG	1 cut(s)	33
BseNI	ACTGG	1 cut(s)	413
BseXI	GCAGC	1 cut(s)	26
Bsh1236I	CGCG	3 cut(s)	135, 229, 231
BshFI	GGCC	2 cut(s)	31, 56
BshTI	ACCGGT	1 cut(s)	463
BshVI	ATCGAT	1 cut(s)	105
BsiHKAI	GWGCWC	1 cut(s)	252
BsiSI	CCGG	1 cut(s)	464
BslFI	GGGAC	2 cut(s)	218, 394
BslI	CCNNNNNNNGG	4 cut(s)	186, 354, 419, 521
BsmAI	GTCTC	2 cut(s)	347, 514
BsmBI	CGTCTC	1 cut(s)	514
BsmFI	GGGAC	2 cut(s)	218, 394
BsnI	GGCC	2 cut(s)	31, 56
Bsp119I	TTCGAA	1 cut(s)	243
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp143I	GATC	1 cut(s)	139
BspACI	CCGC	1 cut(s)	227
BspANI	GGCC	2 cut(s)	31, 56
BspCNI	CTCAG	1 cut(s)	32
BspDI	ATCGAT	1 cut(s)	105
BspFNI	CGCG	3 cut(s)	135, 229, 231
BspQI	GCTCTTC	1 cut(s)	240
BspT104I	TTCGAA	1 cut(s)	243
BsrDI	GCAATG	1 cut(s)	76
BsrFI	RCCGGY	1 cut(s)	463
BsrI	ACTGG	1 cut(s)	413
BssAI	RCCGGY	1 cut(s)	463
BssECI	CCNNGG	2 cut(s)	317, 484
BssMI	GATC	1 cut(s)	139
Bst6I	CTCTTC	1 cut(s)	240
BstBI	TTCGAA	1 cut(s)	243
BstDEI	CTNAG	1 cut(s)	19
BstFNI	CGCG	3 cut(s)	135, 229, 231
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	3 cut(s)	92, 135, 231
BstKTI	GATC	1 cut(s)	142
BstMAI	GTCTC	2 cut(s)	347, 514
BstMBI	GATC	1 cut(s)	139
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BstNSI	RCATGY	1 cut(s)	268
BstSFI	CTRYAG	2 cut(s)	433, 530
BstUI	CGCG	3 cut(s)	135, 229, 231
BstV1I	GCAGC	1 cut(s)	26
BstV2I	GAAGAC	1 cut(s)	398
Bsu15I	ATCGAT	1 cut(s)	105
BsuRI	GGCC	2 cut(s)	31, 56
BsuTUI	ATCGAT	1 cut(s)	105
BtgZI	GCGATG	1 cut(s)	487
CfoI	GCGC	3 cut(s)	92, 135, 231
Cfr10I	RCCGGY	1 cut(s)	463
ClaI	ATCGAT	1 cut(s)	105
CseI	GACGC	3 cut(s)	124, 220, 396
CspAI	ACCGGT	1 cut(s)	463
CviAII	CATG	1 cut(s)	265
DdeI	CTNAG	1 cut(s)	19
DpnI	GATC	1 cut(s)	141
DpnII	GATC	1 cut(s)	139
EaeI	YGGCCR	1 cut(s)	54
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
Ecl136II	GAGCTC	1 cut(s)	250
Eco147I	AGGCCT	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	252
Eco47III	AGCGCT	1 cut(s)	91
Eco53kI	GAGCTC	1 cut(s)	250
Eco57I	CTGAAG	1 cut(s)	204
EcoICRI	GAGCTC	1 cut(s)	250
EcoT38I	GRGCYC	1 cut(s)	252
Esp3I	CGTCTC	1 cut(s)	514
FaeI	CATG	1 cut(s)	268
FaiI	YATR	6 cut(s)	10, 266, 331, 435, 498, 532
FaqI	GGGAC	2 cut(s)	218, 394
FatI	CATG	1 cut(s)	264
Fnu4HI	GCNGC	1 cut(s)	15
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	1 cut(s)	15
FspBI	CTAG	3 cut(s)	87, 96, 363
GlaI	GCGC	3 cut(s)	91, 134, 230
GluI	GCNGC	1 cut(s)	15
HaeII	RGCGCY	1 cut(s)	93
HaeIII	GGCC	2 cut(s)	31, 56
HapII	CCGG	1 cut(s)	464
HgaI	GACGC	3 cut(s)	124, 220, 396
HhaI	GCGC	3 cut(s)	92, 135, 231
Hin1II	CATG	1 cut(s)	268
Hin6I	GCGC	3 cut(s)	90, 133, 229
HinP1I	GCGC	3 cut(s)	90, 133, 229
HinfI	GANTC	4 cut(s)	240, 282, 374, 444
HpaII	CCGG	1 cut(s)	464
Hpy188I	TCNGA	1 cut(s)	279
Hpy188III	TCNNGA	1 cut(s)	64
Hpy99I	CGWCG	2 cut(s)	140, 206
HpyAV	CCTTC	2 cut(s)	320, 487
HpyCH4V	TGCA	2 cut(s)	39, 111
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
HpyF3I	CTNAG	1 cut(s)	19
Hsp92II	CATG	1 cut(s)	268
HspAI	GCGC	3 cut(s)	90, 133, 229
Kzo9I	GATC	1 cut(s)	139
LguI	GCTCTTC	1 cut(s)	240
LmnI	GCTCC	1 cut(s)	229
LpnPI	CCDG	6 cut(s)	128, 193, 250, 282, 426, 477
Lsp1109I	GCAGC	1 cut(s)	26
LweI	GCATC	1 cut(s)	48
MaeI	CTAG	3 cut(s)	87, 96, 363
MaeIII	GTNAC	1 cut(s)	466
MalI	GATC	1 cut(s)	141
MboI	GATC	1 cut(s)	139
MboII	GAAGA	9 cut(s)	257, 280, 369, 372, 375, 403, 439, 442, 445
MfeI	CAATTG	1 cut(s)	184
MhlI	GDGCHC	1 cut(s)	252
MluCI	AATT	1 cut(s)	184
MnlI	CCTC	6 cut(s)	28, 120, 163, 281, 312, 479
MseI	TTAA	2 cut(s)	78, 147
MslI	CAYNNNNRTG	1 cut(s)	263
MspI	CCGG	1 cut(s)	464
MunI	CAATTG	1 cut(s)	184
MvnI	CGCG	3 cut(s)	135, 229, 231
MwoI	GCNNNNNNNGC	1 cut(s)	20
NdeII	GATC	1 cut(s)	139
NlaIII	CATG	1 cut(s)	268
NmeAIII	GCCGAG	1 cut(s)	373
NspI	RCATGY	1 cut(s)	268
NspV	TTCGAA	1 cut(s)	243
PceI	AGGCCT	1 cut(s)	31
PciI	ACATGT	1 cut(s)	264
PciSI	GCTCTTC	1 cut(s)	240
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PfeI	GAWTC	4 cut(s)	240, 282, 374, 444
PflMI	CCANNNNNTGG	2 cut(s)	186, 419
PinAI	ACCGGT	1 cut(s)	463
PkrI	GCNGC	1 cut(s)	16
PscI	ACATGT	1 cut(s)	264
Psp124BI	GAGCTC	1 cut(s)	252
RseI	CAYNNNNRTG	1 cut(s)	263
SacI	GAGCTC	1 cut(s)	252
SapI	GCTCTTC	1 cut(s)	240
SaqAI	TTAA	2 cut(s)	78, 147
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	1 cut(s)	139
SduI	GDGCHC	1 cut(s)	252
SfaNI	GCATC	1 cut(s)	48
SfcI	CTRYAG	2 cut(s)	433, 530
SfuI	TTCGAA	1 cut(s)	243
SmiMI	CAYNNNNRTG	1 cut(s)	263
Sse9I	AATT	1 cut(s)	184
SseBI	AGGCCT	1 cut(s)	31
SsiI	CCGC	1 cut(s)	227
SspMI	CTAG	3 cut(s)	87, 96, 363
SstI	GAGCTC	1 cut(s)	252
StuI	AGGCCT	1 cut(s)	31
TaqI	TCGA	6 cut(s)	105, 138, 243, 252, 372, 442
TasI	AATT	1 cut(s)	184
TfiI	GAWTC	4 cut(s)	240, 282, 374, 444
Tru1I	TTAA	2 cut(s)	78, 147
Tru9I	TTAA	2 cut(s)	78, 147
TseI	GCWGC	1 cut(s)	14
TspDTI	ATGAA	2 cut(s)	404, 474
TspGWI	ACGGA	1 cut(s)	263
Van91I	CCANNNNNTGG	2 cut(s)	186, 419
XceI	RCATGY	1 cut(s)	268
XspI	CTAG	3 cut(s)	87, 96, 363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.