Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003024

Physical Location & Seq

Genomic Coordinates Forward (+)

60985289 .. 60986060

Gene Structure 772 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59619

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGACGGCAACCACCCTATTTCTCCTTCCTTCCCAATTTGAGAGACAAACCCAGATAAAAGAAAAAAGGGAGGATGATGACATACGCAGCCTCAGCTTCAACTCCCACCCGGCCATTGTCAAAAGCAATGGTCTTAATAGCACTAGCGCTTCTAGTATCATTGATTGCAGCACAACAACAAGGAGGAAGGGCGTCGGTCTGGTTAAAGCCTCGTCACCTACAAGACCCACCTTGTCCAGCAATTGGGATTTTCAGTTCGTCGCTACTACTACTACTTCAGCTCCACGCGTCCCCAGATTCGAAGAGCTCGATACCACCAACATGCTCCTCCGTCAGAGAATCATCTTCTTGGGTTCTCAGGTGGATGATATGAGGCAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009368 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009840 GO:0009941 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

127

Amino Acids

14.25

Weight (kDa)

9.5

Isoelectric Point (pI)

36.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66670
fragaria_vesca	FvH4_7g04110
malus_domestica	MD02G1275200.v1.1 MD07G1043100.v1.1
prunus_persica	Prupe.2G045800_v2.0.a1 Prupe.2G045800_v2.0.a1 Prupe.2G045800_v2.0.a1
pyrus_communis	pycom02g23530 pycom07g03020
rosa_chinensis	RchiOBHm_Chr1g0327981 RchiOBHm_Chr1g0372191
rosa_laevigata	RLG00000008647 RLG00000012938 RLG00000021509 RLG00000029950
rosa_multiflora	Rmu_sc0000064.1_g000027 Rmu_sc0000272.1_g000043 Rmu_sc0001755.1_g000019 Rmu_sc0003977.1_g000001 Rmu_sc0007782.1_g000018 Rmu_ssc0000309.1_g000031
rosa_roxburghii	Rroxscaffold_4G00322040
rosa_rugosa	Rorug01G0073100
rosa_samantha	Rh1AG089900 Rh1BG071800 Rh1BG342100 Rh1CG086900 Rh1DG093600 Rh2BG432000 Rh2CG303000 Rh6AG065100 Rh6AG270700 Rh6BG088100 Rh6DG224400 Rh7DG308700
rosa_wichuraiana	Rw0G022860 Rw1G006940 Rw1G006960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	243
AccII	CGCG	1 cut(s)	288
AcoI	YGGCCR	1 cut(s)	111
AcuI	CTGAAG	1 cut(s)	261
AcyI	GRCGYC	1 cut(s)	192
AfeI	AGCGCT	1 cut(s)	148
AfiI	CCNNNNNNNGG	1 cut(s)	243
AflIII	ACRYGT	1 cut(s)	286
AgsI	TTSAA	1 cut(s)	100
AloI	GAACNNNNNNTCC	2 cut(s)	239, 271
AluBI	AGCT	3 cut(s)	96, 281, 307
AluI	AGCT	3 cut(s)	96, 281, 307
Alw21I	GWGCWC	1 cut(s)	309
Alw26I	GTCTC	1 cut(s)	37
Aor51HI	AGCGCT	1 cut(s)	148
AoxI	GGCC	1 cut(s)	111
ApeKI	GCWGC	2 cut(s)	87, 168
AspLEI	GCGC	1 cut(s)	149
AsuC2I	CCSGG	1 cut(s)	110
AsuHPI	GGTGA	1 cut(s)	207
AsuII	TTCGAA	1 cut(s)	300
BanII	GRGCYC	1 cut(s)	309
Bbv12I	GWGCWC	1 cut(s)	309
BbvCI	CCTCAGC	1 cut(s)	92
BbvI	GCAGC	2 cut(s)	99, 180
BceAI	ACGGC	1 cut(s)	21
BcnI	CCSGG	1 cut(s)	110
BcoDI	GTCTC	1 cut(s)	37
BfaI	CTAG	2 cut(s)	144, 153
BfoI	RGCGCY	1 cut(s)	150
BisI	GCNGC	2 cut(s)	88, 169
BlsI	GCNGC	2 cut(s)	89, 170
Bme1390I	CCNGG	1 cut(s)	110
BmrFI	CCNGG	1 cut(s)	110
Bpu10I	CCTNAGC	1 cut(s)	92
Bpu14I	TTCGAA	1 cut(s)	300
BpuMI	CCSGG	1 cut(s)	110
BsaHI	GRCGYC	1 cut(s)	192
BsaXI	ACNNNNNCTCC	2 cut(s)	265, 295
Bsc4I	CCNNNNNNNGG	1 cut(s)	243
Bse3DI	GCAATG	1 cut(s)	133
BseGI	GGATG	2 cut(s)	79, 370
BseLI	CCNNNNNNNGG	1 cut(s)	243
BseMI	GCAATG	1 cut(s)	133
BseMII	CTCAG	2 cut(s)	106, 371
BseRI	GAGGAG	1 cut(s)	317
BseXI	GCAGC	2 cut(s)	99, 180
Bsh1236I	CGCG	1 cut(s)	288
BshFI	GGCC	1 cut(s)	113
BsiHKAI	GWGCWC	1 cut(s)	309
BsiSI	CCGG	1 cut(s)	110
BslFI	GGGAC	1 cut(s)	275
BslI	CCNNNNNNNGG	1 cut(s)	243
BsmAI	GTCTC	1 cut(s)	37
BsmFI	GGGAC	1 cut(s)	275
BsnI	GGCC	1 cut(s)	113
Bsp119I	TTCGAA	1 cut(s)	300
Bsp1286I	GDGCHC	1 cut(s)	309
BspANI	GGCC	1 cut(s)	113
BspCNI	CTCAG	2 cut(s)	105, 370
BspFNI	CGCG	1 cut(s)	288
BspQI	GCTCTTC	1 cut(s)	297
BspT104I	TTCGAA	1 cut(s)	300
BsrDI	GCAATG	1 cut(s)	133
BssNI	GRCGYC	1 cut(s)	192
Bst6I	CTCTTC	1 cut(s)	297
BstACI	GRCGYC	1 cut(s)	192
BstBI	TTCGAA	1 cut(s)	300
BstDEI	CTNAG	2 cut(s)	92, 357
BstF5I	GGATG	2 cut(s)	79, 370
BstFNI	CGCG	1 cut(s)	288
BstH2I	RGCGCY	1 cut(s)	150
BstHHI	GCGC	1 cut(s)	149
BstMAI	GTCTC	1 cut(s)	37
BstMWI	GCNNNNNNNGC	1 cut(s)	93
BstNSI	RCATGY	1 cut(s)	325
BstSCI	CCNGG	1 cut(s)	108
BstUI	CGCG	1 cut(s)	288
BstV1I	GCAGC	2 cut(s)	99, 180
BsuRI	GGCC	1 cut(s)	113
BtsCI	GGATG	2 cut(s)	79, 370
CfoI	GCGC	1 cut(s)	149
CseI	GACGC	2 cut(s)	181, 277
CviAII	CATG	1 cut(s)	322
CviJI	RGCY	6 cut(s)	90, 96, 113, 209, 281, 307
CviKI_1	RGCY	6 cut(s)	90, 96, 113, 209, 281, 307
DdeI	CTNAG	2 cut(s)	92, 357
EaeI	YGGCCR	1 cut(s)	111
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
Ecl136II	GAGCTC	1 cut(s)	307
Eco24I	GRGCYC	1 cut(s)	309
Eco47III	AGCGCT	1 cut(s)	148
Eco53kI	GAGCTC	1 cut(s)	307
Eco57I	CTGAAG	1 cut(s)	261
EcoICRI	GAGCTC	1 cut(s)	307
EcoT38I	GRGCYC	1 cut(s)	309
FaeI	CATG	1 cut(s)	325
FaiI	YATR	3 cut(s)	83, 323, 371
FaqI	GGGAC	1 cut(s)	275
FatI	CATG	1 cut(s)	321
Fnu4HI	GCNGC	2 cut(s)	88, 169
FokI	GGATG	2 cut(s)	86, 377
FriOI	GRGCYC	1 cut(s)	309
Fsp4HI	GCNGC	2 cut(s)	88, 169
FspBI	CTAG	2 cut(s)	144, 153
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	2 cut(s)	88, 169
HaeII	RGCGCY	1 cut(s)	150
HaeIII	GGCC	1 cut(s)	113
HapII	CCGG	1 cut(s)	110
HgaI	GACGC	2 cut(s)	181, 277
HhaI	GCGC	1 cut(s)	149
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	1 cut(s)	325
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HinfI	GANTC	2 cut(s)	297, 339
HpaII	CCGG	1 cut(s)	110
HphI	GGTGA	1 cut(s)	207
Hpy188I	TCNGA	1 cut(s)	336
Hpy99I	CGWCG	2 cut(s)	197, 263
HpyAV	CCTTC	3 cut(s)	35, 39, 181
HpyCH4V	TGCA	1 cut(s)	168
HpyF10VI	GCNNNNNNNGC	1 cut(s)	93
HpyF3I	CTNAG	2 cut(s)	92, 357
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	1 cut(s)	325
HspAI	GCGC	1 cut(s)	147
LguI	GCTCTTC	1 cut(s)	297
LmnI	GCTCC	2 cut(s)	286, 330
LpnPI	CCDG	6 cut(s)	65, 123, 185, 250, 307, 344
Lsp1109I	GCAGC	2 cut(s)	99, 180
MaeI	CTAG	2 cut(s)	144, 153
MaeIII	GTNAC	1 cut(s)	213
MboII	GAAGA	2 cut(s)	314, 337
MfeI	CAATTG	1 cut(s)	241
MhlI	GDGCHC	1 cut(s)	309
MluCI	AATT	2 cut(s)	35, 241
MluI	ACGCGT	1 cut(s)	286
MnlI	CCTC	6 cut(s)	64, 101, 177, 220, 338, 366
MseI	TTAA	2 cut(s)	135, 204
MslI	CAYNNNNRTG	1 cut(s)	320
MspI	CCGG	1 cut(s)	110
MspR9I	CCNGG	1 cut(s)	110
MunI	CAATTG	1 cut(s)	241
MvnI	CGCG	1 cut(s)	288
MwoI	GCNNNNNNNGC	1 cut(s)	93
NciI	CCSGG	1 cut(s)	110
NlaIII	CATG	1 cut(s)	325
NmuCI	GTSAC	1 cut(s)	213
NspI	RCATGY	1 cut(s)	325
NspV	TTCGAA	1 cut(s)	300
PciSI	GCTCTTC	1 cut(s)	297
PcsI	WCGNNNNNNNCGW	1 cut(s)	306
PfeI	GAWTC	2 cut(s)	297, 339
PflMI	CCANNNNNTGG	1 cut(s)	243
PkrI	GCNGC	2 cut(s)	89, 170
Psp124BI	GAGCTC	1 cut(s)	309
RseI	CAYNNNNRTG	1 cut(s)	320
SacI	GAGCTC	1 cut(s)	309
SapI	GCTCTTC	1 cut(s)	297
SaqAI	TTAA	2 cut(s)	135, 204
SatI	GCNGC	2 cut(s)	88, 169
ScrFI	CCNGG	1 cut(s)	110
SduI	GDGCHC	1 cut(s)	309
SetI	ASST	6 cut(s)	98, 220, 233, 283, 309, 363
SfuI	TTCGAA	1 cut(s)	300
SmiMI	CAYNNNNRTG	1 cut(s)	320
Sse9I	AATT	2 cut(s)	35, 241
SspMI	CTAG	2 cut(s)	144, 153
SstI	GAGCTC	1 cut(s)	309
StyD4I	CCNGG	1 cut(s)	108
TaqI	TCGA	2 cut(s)	300, 309
TaqII	GACCGA	1 cut(s)	185
TasI	AATT	2 cut(s)	35, 241
TfiI	GAWTC	2 cut(s)	297, 339
Tru1I	TTAA	2 cut(s)	135, 204
Tru9I	TTAA	2 cut(s)	135, 204
TseFI	GTSAC	1 cut(s)	213
TseI	GCWGC	2 cut(s)	87, 168
Tsp45I	GTSAC	1 cut(s)	213
TspGWI	ACGGA	1 cut(s)	320
Van91I	CCANNNNNTGG	1 cut(s)	243
XceI	RCATGY	1 cut(s)	325
XspI	CTAG	2 cut(s)	144, 153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.