Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003024

Physical Location & Seq

Genomic Coordinates Forward (+)

76006041 .. 76008147

Gene Structure 2107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021509

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGATGACATATGGAGCCTCAGCTTCAAGGCCTCTCTGCTTCAACACCCAACCGGCCATTGTCAAGAGCAATGGTCTTAATAGCACTAGCGCTTCTAGTATCATTGATTGCAGCACAACAATAAGGAGGAGGCGCATTGGTCTGGTTAGAGCCTCGTCGCCTACAAGACCCACCTTGTCCAGCAATTGGGATTTTCATTTCTCGGCTACTACTACTACTTCAGTTCCACGTGTCCCCAGATTCAAAGAGCTCGATACCACCAACATGCTCCTCCGCGATTCTGCCGCCATTGACGACTTTGAAAGCATCGACTGCTTCAAATCTCAGCCGCTAGATCAGAGCCACTCGTCAGAGAACAACTCGGCTTCAAATTTGAGCTCCTGGCCACCGGGCTCGATGATCGGAAGCTCAAGGTATGCAATCTCAAATTGGAGCTCAGATATGCAATCTCAGATCCCGACGGATTCAAATAAGAGCTCAGATAAGCAATCTCAGATCCCGGCGGTGGGAACGAGGCCGAAGCTGCAAGAAGAGGTTGGAGTTACCTTCGAAGGCGGAGACGATGTCATCGATGTTGTTATTGGACCTGACGCCAGAGCCGTAAGGCCAGGTGGTTTTGCGACACTGGAGCTCGCATACCAGATCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009368 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009840 GO:0009941 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

217

Amino Acids

23.42

Weight (kDa)

5.69

Isoelectric Point (pI)

48.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66670
fragaria_vesca	FvH4_7g04110
malus_domestica	MD02G1275200.v1.1 MD07G1043100.v1.1
prunus_persica	Prupe.2G045800_v2.0.a1 Prupe.2G045800_v2.0.a1 Prupe.2G045800_v2.0.a1
pyrus_communis	pycom02g23530 pycom07g03020
rosa_chinensis	RchiOBHm_Chr1g0327981 RchiOBHm_Chr1g0372191
rosa_laevigata	RLG00000008647 RLG00000012938 RLG00000021509 RLG00000029950
rosa_multiflora	Rmu_sc0000064.1_g000027 Rmu_sc0000272.1_g000043 Rmu_sc0001755.1_g000019 Rmu_sc0003977.1_g000001 Rmu_sc0007782.1_g000018 Rmu_ssc0000309.1_g000031
rosa_roxburghii	Rroxscaffold_4G00322040
rosa_rugosa	Rorug01G0073100
rosa_samantha	Rh1AG089900 Rh1BG071800 Rh1BG342100 Rh1CG086900 Rh1DG093600 Rh2BG432000 Rh2CG303000 Rh6AG065100 Rh6AG270700 Rh6BG088100 Rh6DG224400 Rh7DG308700
rosa_wichuraiana	Rw0G022860 Rw1G006940 Rw1G006960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	186
AccII	CGCG	1 cut(s)	276
AciI	CCGC	5 cut(s)	274, 285, 329, 503, 555
AclWI	GGATC	2 cut(s)	448, 490
AcoI	YGGCCR	2 cut(s)	54, 383
AcsI	RAATTY	1 cut(s)	370
AcuI	CTGAAG	1 cut(s)	204
AcvI	CACGTG	1 cut(s)	230
AcyI	GRCGYC	1 cut(s)	591
AfeI	AGCGCT	1 cut(s)	91
AfiI	CCNNNNNNNGG	3 cut(s)	186, 505, 506
AflIII	ACRYGT	1 cut(s)	229
AgsI	TTSAA	7 cut(s)	27, 43, 244, 302, 319, 369, 468
AjnI	CCWGG	2 cut(s)	380, 607
AluBI	AGCT	8 cut(s)	23, 250, 378, 408, 435, 477, 523, 631
AluI	AGCT	8 cut(s)	23, 250, 378, 408, 435, 477, 523, 631
Alw21I	GWGCWC	5 cut(s)	252, 380, 437, 479, 633
Alw26I	GTCTC	1 cut(s)	552
AlwI	GGATC	2 cut(s)	448, 490
Aor51HI	AGCGCT	1 cut(s)	91
AoxI	GGCC	5 cut(s)	29, 54, 383, 515, 605
ApeKI	GCWGC	2 cut(s)	111, 523
ApoI	RAATTY	1 cut(s)	370
AspLEI	GCGC	2 cut(s)	92, 135
AspS9I	GGNCC	1 cut(s)	584
AsuC2I	CCSGG	2 cut(s)	390, 500
AsuII	TTCGAA	1 cut(s)	549
AvaII	GGWCC	1 cut(s)	584
BalI	TGGCCA	1 cut(s)	385
BanII	GRGCYC	6 cut(s)	252, 380, 395, 437, 479, 633
BbrPI	CACGTG	1 cut(s)	230
Bbv12I	GWGCWC	5 cut(s)	252, 380, 437, 479, 633
BbvCI	CCTCAGC	1 cut(s)	19
BbvI	GCAGC	2 cut(s)	123, 510
BceAI	ACGGC	1 cut(s)	584
BciT130I	CCWGG	2 cut(s)	382, 609
BcnI	CCSGG	2 cut(s)	390, 500
BcoDI	GTCTC	1 cut(s)	552
BfaI	CTAG	4 cut(s)	87, 96, 332, 649
BfoI	RGCGCY	1 cut(s)	93
BglII	AGATCT	1 cut(s)	642
BisI	GCNGC	4 cut(s)	112, 285, 329, 524
BlsI	GCNGC	4 cut(s)	113, 286, 330, 525
Bme1390I	CCNGG	4 cut(s)	382, 390, 500, 609
Bme18I	GGWCC	1 cut(s)	584
BmgT120I	GGNCC	1 cut(s)	584
BmiI	GGNNCC	1 cut(s)	16
BmrFI	CCNGG	4 cut(s)	382, 390, 500, 609
BmsI	GCATC	1 cut(s)	315
BplI	GAGNNNNNCTC	2 cut(s)	344, 376
BpmI	CTGGAG	1 cut(s)	647
Bpu10I	CCTNAGC	1 cut(s)	19
Bpu14I	TTCGAA	1 cut(s)	549
BpuEI	CTTGAG	1 cut(s)	394
BpuMI	CCSGG	2 cut(s)	390, 500
Bsa29I	ATCGAT	1 cut(s)	570
BsaAI	YACGTR	1 cut(s)	230
BsaHI	GRCGYC	1 cut(s)	591
BsaXI	ACNNNNNCTCC	2 cut(s)	549, 579
Bsc4I	CCNNNNNNNGG	3 cut(s)	186, 505, 506
Bse118I	RCCGGY	1 cut(s)	52
Bse1I	ACTGG	1 cut(s)	630
Bse3DI	GCAATG	1 cut(s)	76
BseBI	CCWGG	2 cut(s)	382, 609
BseCI	ATCGAT	1 cut(s)	570
BseLI	CCNNNNNNNGG	3 cut(s)	186, 505, 506
BseMI	GCAATG	1 cut(s)	76
BseMII	CTCAG	6 cut(s)	33, 338, 450, 464, 492, 506
BseNI	ACTGG	1 cut(s)	630
BseRI	GAGGAG	2 cut(s)	142, 260
BseXI	GCAGC	2 cut(s)	123, 510
Bsh1236I	CGCG	1 cut(s)	276
BshFI	GGCC	5 cut(s)	31, 56, 385, 517, 607
BshVI	ATCGAT	1 cut(s)	570
BsiHKAI	GWGCWC	5 cut(s)	252, 380, 437, 479, 633
BsiSI	CCGG	3 cut(s)	53, 389, 500
BslFI	GGGAC	1 cut(s)	218
BslI	CCNNNNNNNGG	3 cut(s)	186, 505, 506
BsmAI	GTCTC	1 cut(s)	552
BsmBI	CGTCTC	1 cut(s)	552
BsmFI	GGGAC	1 cut(s)	218
BsnI	GGCC	5 cut(s)	31, 56, 385, 517, 607
Bsp119I	TTCGAA	1 cut(s)	549
Bsp1286I	GDGCHC	6 cut(s)	252, 380, 395, 437, 479, 633
Bsp143I	GATC	5 cut(s)	334, 399, 453, 495, 642
BspACI	CCGC	5 cut(s)	274, 285, 329, 503, 555
BspANI	GGCC	5 cut(s)	31, 56, 385, 517, 607
BspCNI	CTCAG	6 cut(s)	32, 337, 449, 463, 491, 505
BspDI	ATCGAT	1 cut(s)	570
BspFNI	CGCG	1 cut(s)	276
BspLI	GGNNCC	1 cut(s)	16
BspPI	GGATC	2 cut(s)	448, 490
BspT104I	TTCGAA	1 cut(s)	549
BsrDI	GCAATG	1 cut(s)	76
BsrFI	RCCGGY	1 cut(s)	52
BsrI	ACTGG	1 cut(s)	630
BssAI	RCCGGY	1 cut(s)	52
BssMI	GATC	5 cut(s)	334, 399, 453, 495, 642
BssNI	GRCGYC	1 cut(s)	591
Bst2UI	CCWGG	2 cut(s)	382, 609
Bst6I	CTCTTC	1 cut(s)	525
BstACI	GRCGYC	1 cut(s)	591
BstAPI	GCANNNNNTGC	1 cut(s)	312
BstBAI	YACGTR	1 cut(s)	230
BstBI	TTCGAA	1 cut(s)	549
BstC8I	GCNNGC	1 cut(s)	633
BstDEI	CTNAG	6 cut(s)	19, 324, 436, 450, 478, 492
BstFNI	CGCG	1 cut(s)	276
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	2 cut(s)	92, 135
BstKTI	GATC	5 cut(s)	337, 402, 456, 498, 645
BstMAI	GTCTC	1 cut(s)	552
BstMBI	GATC	5 cut(s)	334, 399, 453, 495, 642
BstMWI	GCNNNNNNNGC	2 cut(s)	312, 523
BstNI	CCWGG	2 cut(s)	382, 609
BstNSI	RCATGY	1 cut(s)	268
BstSCI	CCNGG	4 cut(s)	380, 388, 498, 607
BstUI	CGCG	1 cut(s)	276
BstV1I	GCAGC	2 cut(s)	123, 510
BstX2I	RGATCY	3 cut(s)	453, 495, 642
BstYI	RGATCY	3 cut(s)	453, 495, 642
Bsu15I	ATCGAT	1 cut(s)	570
BsuRI	GGCC	5 cut(s)	31, 56, 385, 517, 607
BsuTUI	ATCGAT	1 cut(s)	570
BtsIMutI	CAGTG	1 cut(s)	623
Cac8I	GCNNGC	1 cut(s)	633
CfoI	GCGC	2 cut(s)	92, 135
Cfr10I	RCCGGY	1 cut(s)	52
Cfr13I	GGNCC	1 cut(s)	584
ClaI	ATCGAT	1 cut(s)	570
CseI	GACGC	1 cut(s)	599
CviAII	CATG	1 cut(s)	265
DdeI	CTNAG	6 cut(s)	19, 324, 436, 450, 478, 492
DpnI	GATC	5 cut(s)	336, 401, 455, 497, 644
DpnII	GATC	5 cut(s)	334, 399, 453, 495, 642
EaeI	YGGCCR	2 cut(s)	54, 383
Eam1104I	CTCTTC	1 cut(s)	525
EarI	CTCTTC	1 cut(s)	525
EciI	GGCGGA	1 cut(s)	570
Ecl136II	GAGCTC	5 cut(s)	250, 378, 435, 477, 631
Eco147I	AGGCCT	1 cut(s)	31
Eco24I	GRGCYC	6 cut(s)	252, 380, 395, 437, 479, 633
Eco47I	GGWCC	1 cut(s)	584
Eco47III	AGCGCT	1 cut(s)	91
Eco53kI	GAGCTC	5 cut(s)	250, 378, 435, 477, 631
Eco57I	CTGAAG	1 cut(s)	204
Eco72I	CACGTG	1 cut(s)	230
EcoICRI	GAGCTC	5 cut(s)	250, 378, 435, 477, 631
EcoRII	CCWGG	2 cut(s)	380, 607
EcoT38I	GRGCYC	6 cut(s)	252, 380, 395, 437, 479, 633
Esp3I	CGTCTC	1 cut(s)	552
FaeI	CATG	1 cut(s)	268
FaiI	YATR	6 cut(s)	10, 12, 266, 417, 443, 637
FaqI	GGGAC	1 cut(s)	218
FatI	CATG	1 cut(s)	264
FauNDI	CATATG	1 cut(s)	10
Fnu4HI	GCNGC	4 cut(s)	112, 285, 329, 524
FriOI	GRGCYC	6 cut(s)	252, 380, 395, 437, 479, 633
Fsp4HI	GCNGC	4 cut(s)	112, 285, 329, 524
FspBI	CTAG	4 cut(s)	87, 96, 332, 649
GlaI	GCGC	2 cut(s)	91, 134
GluI	GCNGC	4 cut(s)	112, 285, 329, 524
GsuI	CTGGAG	1 cut(s)	647
HaeII	RGCGCY	1 cut(s)	93
HaeIII	GGCC	5 cut(s)	31, 56, 385, 517, 607
HapII	CCGG	3 cut(s)	53, 389, 500
HgaI	GACGC	1 cut(s)	599
HhaI	GCGC	2 cut(s)	92, 135
Hin1I	GRCGYC	1 cut(s)	591
Hin1II	CATG	1 cut(s)	268
Hin6I	GCGC	2 cut(s)	90, 133
HinP1I	GCGC	2 cut(s)	90, 133
HinfI	GANTC	3 cut(s)	240, 278, 464
HpaII	CCGG	3 cut(s)	53, 389, 500
Hpy188I	TCNGA	7 cut(s)	339, 352, 404, 439, 453, 481, 495
Hpy188III	TCNNGA	2 cut(s)	64, 457
Hpy99I	CGWCG	2 cut(s)	160, 463
HpyAV	CCTTC	2 cut(s)	545, 556
HpyCH4IV	ACGT	1 cut(s)	229
HpyCH4V	TGCA	4 cut(s)	111, 419, 445, 526
HpyF10VI	GCNNNNNNNGC	2 cut(s)	312, 523
HpyF3I	CTNAG	6 cut(s)	19, 324, 436, 450, 478, 492
HpySE526I	ACGT	1 cut(s)	229
Hsp92I	GRCGYC	1 cut(s)	591
Hsp92II	CATG	1 cut(s)	268
HspAI	GCGC	2 cut(s)	90, 133
Kzo9I	GATC	5 cut(s)	334, 399, 453, 495, 642
LmnI	GCTCC	5 cut(s)	14, 273, 383, 432, 628
Lsp1109I	GCAGC	2 cut(s)	123, 510
LweI	GCATC	1 cut(s)	315
MaeI	CTAG	4 cut(s)	87, 96, 332, 649
MaeII	ACGT	1 cut(s)	229
MaeIII	GTNAC	1 cut(s)	541
MalI	GATC	5 cut(s)	336, 401, 455, 497, 644
MboI	GATC	5 cut(s)	334, 399, 453, 495, 642
MboII	GAAGA	2 cut(s)	542, 637
MfeI	CAATTG	1 cut(s)	184
MflI	RGATCY	3 cut(s)	453, 495, 642
MhlI	GDGCHC	6 cut(s)	252, 380, 395, 437, 479, 633
MlsI	TGGCCA	1 cut(s)	385
MluCI	AATT	3 cut(s)	184, 370, 427
MluNI	TGGCCA	1 cut(s)	385
MmeI	TCCRAC	1 cut(s)	517
MnlI	CCTC	8 cut(s)	28, 42, 120, 123, 163, 281, 507, 526
Mox20I	TGGCCA	1 cut(s)	385
MscI	TGGCCA	1 cut(s)	385
MseI	TTAA	1 cut(s)	78
MslI	CAYNNNNRTG	1 cut(s)	263
Msp20I	TGGCCA	1 cut(s)	385
MspI	CCGG	3 cut(s)	53, 389, 500
MspR9I	CCNGG	4 cut(s)	382, 390, 500, 609
MunI	CAATTG	1 cut(s)	184
MvaI	CCWGG	2 cut(s)	382, 609
MvnI	CGCG	1 cut(s)	276
MwoI	GCNNNNNNNGC	2 cut(s)	312, 523
NciI	CCSGG	2 cut(s)	390, 500
NdeI	CATATG	1 cut(s)	10
NdeII	GATC	5 cut(s)	334, 399, 453, 495, 642
NlaIII	CATG	1 cut(s)	268
NlaIV	GGNNCC	1 cut(s)	16
NmeAIII	GCCGAG	2 cut(s)	182, 341
NspI	RCATGY	1 cut(s)	268
NspV	TTCGAA	1 cut(s)	549
PceI	AGGCCT	1 cut(s)	31
PcsI	WCGNNNNNNNCGW	2 cut(s)	567, 597
PfeI	GAWTC	3 cut(s)	240, 278, 464
PflFI	GACNNNGTC	1 cut(s)	563
PflMI	CCANNNNNTGG	1 cut(s)	186
PkrI	GCNGC	4 cut(s)	113, 286, 330, 525
PmaCI	CACGTG	1 cut(s)	230
PmlI	CACGTG	1 cut(s)	230
Ppu21I	YACGTR	1 cut(s)	230
Psp124BI	GAGCTC	5 cut(s)	252, 380, 437, 479, 633
Psp6I	CCWGG	2 cut(s)	380, 607
PspCI	CACGTG	1 cut(s)	230
PspGI	CCWGG	2 cut(s)	380, 607
PspN4I	GGNNCC	1 cut(s)	16
PspPI	GGNCC	1 cut(s)	584
PsuI	RGATCY	3 cut(s)	453, 495, 642
PsyI	GACNNNGTC	1 cut(s)	563
RseI	CAYNNNNRTG	1 cut(s)	263
SacI	GAGCTC	5 cut(s)	252, 380, 437, 479, 633
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	4 cut(s)	112, 285, 329, 524
Sau3AI	GATC	5 cut(s)	334, 399, 453, 495, 642
Sau96I	GGNCC	1 cut(s)	584
ScrFI	CCNGG	4 cut(s)	382, 390, 500, 609
SduI	GDGCHC	6 cut(s)	252, 380, 395, 437, 479, 633
SfaNI	GCATC	1 cut(s)	315
SfuI	TTCGAA	1 cut(s)	549
SinI	GGWCC	1 cut(s)	584
SmiMI	CAYNNNNRTG	1 cut(s)	263
SmlI	CTYRAG	1 cut(s)	409
SmoI	CTYRAG	1 cut(s)	409
Sse9I	AATT	3 cut(s)	184, 370, 427
SseBI	AGGCCT	1 cut(s)	31
SsiI	CCGC	5 cut(s)	274, 285, 329, 503, 555
SspMI	CTAG	4 cut(s)	87, 96, 332, 649
SstI	GAGCTC	5 cut(s)	252, 380, 437, 479, 633
StuI	AGGCCT	1 cut(s)	31
StyD4I	CCNGG	4 cut(s)	380, 388, 498, 607
TaiI	ACGT	1 cut(s)	232
TaqI	TCGA	5 cut(s)	252, 309, 395, 549, 570
TasI	AATT	3 cut(s)	184, 370, 427
TauI	GCSGC	2 cut(s)	287, 331
TfiI	GAWTC	3 cut(s)	240, 278, 464
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TscAI	CASTG	1 cut(s)	630
TseI	GCWGC	2 cut(s)	111, 523
TspDTI	ATGAA	1 cut(s)	185
TspGWI	ACGGA	1 cut(s)	476
TspRI	CASTG	1 cut(s)	630
Tth111I	GACNNNGTC	1 cut(s)	563
Van91I	CCANNNNNTGG	1 cut(s)	186
VpaK11BI	GGWCC	1 cut(s)	584
XapI	RAATTY	1 cut(s)	370
XceI	RCATGY	1 cut(s)	268
XspI	CTAG	4 cut(s)	87, 96, 332, 649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.