Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0003024

Physical Location & Seq

Genomic Coordinates Forward (+)

21605900 .. 21610938

Gene Structure 5039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g23530.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGATGACGTACGCAGCCACAGCTTCAAGGCCGCCGTGTTCTTCACAAACCCAAGTGCCCATTGCACGGATTGTGAGGGGCACTGCCCTCAACAGCAGCAGCTGCCGCAATAGTATTACCAGTTGCCGTCGGAGAAGCAATGGCTTCTGTGTAATTAAGGCCATGAAGAGCTCGTCTCCCCCAAGACTGACCTTGTCGAGCAATTGGGATTTTCCGTCAGCTACTACTTCGGCTCCAAGGCTGCCCAGATTCGAAGAGCTCGATACCACCAACATGCTTCTCCGTCAGAGAATCATCTTTCTGGGTTCTCAGGTAGATGACATGACCGCGGATTTGATCATAAGCCAACTTCTATTTCTAGATGCTGAGGACCCCAAAAAGGACATTAAATTGTTTATCAATTCACCCGGTGGTTCTGTTACTGCTGGAATGGGAATATATGATGCAATGAAATTGTGCAAGGCAGATGTTTCAACTGTTTGCCTGGGGCTTGCTGCTTCTATGGGGGCCTTTCTCCTTGCTGCAGGTTCTAAAGGAAAGAGATTCTGCATGCCCAATGCAAGAGTGATGATCCATCAACCCCTTGGAACTGCAGGAGGAAAAGCAACGGAAATGGGTATTCGAATCAGAGAAATGGTGTACCACAAGATTAAATTGAACAAAATATTTTCAAGAATCACAGGGAAGCCTTTAGAGCAGATTGAAGAGGACACAGACCGTGATAATTTCATGAATCCTTGGGAAGCTAAGGATTACGGGTTGATTGATTTCGTTATCGATGATGGAAAGCCAGGCTTAGTTGCGCCCGTAGGAGATTTCACACCACCACCCAGAACACGAGTCTGGGATCAATGGAAAGTTGAAGGGAGCAAGAAATCGAGAAAGAACTTGCCCTCAGAGCAAAGATTTTCTGACAATGGGAGAGAGGCTGAGAAGGAAAAGGAAGCACCCGCTGCTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009368 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009840 GO:0009941 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

321

Amino Acids

35.24

Weight (kDa)

9.3

Isoelectric Point (pI)

39.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66670
fragaria_vesca	FvH4_7g04110
malus_domestica	MD02G1275200.v1.1 MD07G1043100.v1.1
prunus_persica	Prupe.2G045800_v2.0.a1 Prupe.2G045800_v2.0.a1 Prupe.2G045800_v2.0.a1
pyrus_communis	pycom02g23530 pycom07g03020
rosa_chinensis	RchiOBHm_Chr1g0327981 RchiOBHm_Chr1g0372191
rosa_laevigata	RLG00000008647 RLG00000012938 RLG00000021509 RLG00000029950
rosa_multiflora	Rmu_sc0000064.1_g000027 Rmu_sc0000272.1_g000043 Rmu_sc0001755.1_g000019 Rmu_sc0003977.1_g000001 Rmu_sc0007782.1_g000018 Rmu_ssc0000309.1_g000031
rosa_roxburghii	Rroxscaffold_4G00322040
rosa_rugosa	Rorug01G0073100
rosa_samantha	Rh1AG089900 Rh1BG071800 Rh1BG342100 Rh1CG086900 Rh1DG093600 Rh2BG432000 Rh2CG303000 Rh6AG065100 Rh6AG270700 Rh6BG088100 Rh6DG224400 Rh7DG308700
rosa_wichuraiana	Rw0G022860 Rw1G006940 Rw1G006960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	515
AccII	CGCG	1 cut(s)	329
AciI	CCGC	5 cut(s)	32, 106, 327, 329, 951
AclWI	GGATC	2 cut(s)	565, 855
AdeI	CACNNNGTG	1 cut(s)	410
AfaI	GTAC	2 cut(s)	11, 641
AfiI	CCNNNNNNNGG	2 cut(s)	66, 379
AgsI	TTSAA	6 cut(s)	27, 474, 658, 672, 704, 863
AjnI	CCWGG	2 cut(s)	483, 790
AjuI	GAANNNNNNNTTGG	2 cut(s)	339, 371
AluBI	AGCT	6 cut(s)	23, 102, 171, 221, 259, 746
AluI	AGCT	6 cut(s)	23, 102, 171, 221, 259, 746
Alw21I	GWGCWC	2 cut(s)	173, 261
Alw26I	GTCTC	1 cut(s)	180
AlwI	GGATC	2 cut(s)	565, 855
AlwNI	CAGNNNCTG	1 cut(s)	102
AoxI	GGCC	3 cut(s)	29, 159, 507
ApeKI	GCWGC	8 cut(s)	14, 96, 99, 102, 241, 494, 521, 953
ArsI	GACNNNNNNTTYG	2 cut(s)	316, 348
AspLEI	GCGC	1 cut(s)	805
AspS9I	GGNCC	2 cut(s)	370, 507
AsuC2I	CCSGG	1 cut(s)	408
AsuHPI	GGTGA	1 cut(s)	396
AsuII	TTCGAA	2 cut(s)	252, 622
AvaII	GGWCC	1 cut(s)	370
BaeGI	GKGCMC	2 cut(s)	60, 83
BanII	GRGCYC	2 cut(s)	173, 261
BauI	CACGAG	1 cut(s)	837
Bbv12I	GWGCWC	2 cut(s)	173, 261
BbvCI	CCTCAGC	1 cut(s)	366
BbvI	GCAGC	8 cut(s)	26, 89, 108, 111, 228, 481, 508, 940
BccI	CCATC	2 cut(s)	582, 776
BceAI	ACGGC	2 cut(s)	19, 111
BciT130I	CCWGG	2 cut(s)	485, 792
BclI	TGATCA	1 cut(s)	336
BcnI	CCSGG	1 cut(s)	408
BcoDI	GTCTC	1 cut(s)	180
BfaI	CTAG	1 cut(s)	359
BfmI	CTRYAG	2 cut(s)	522, 591
BfuAI	ACCTGC	1 cut(s)	515
Bme1390I	CCNGG	3 cut(s)	408, 485, 792
Bme18I	GGWCC	1 cut(s)	370
BmgT120I	GGNCC	2 cut(s)	370, 507
BmiI	GGNNCC	3 cut(s)	234, 372, 508
BmrFI	CCNGG	3 cut(s)	408, 485, 792
BmsI	GCATC	2 cut(s)	352, 433
BplI	GAGNNNNNCTC	2 cut(s)	160, 192
Bpu10I	CCTNAGC	2 cut(s)	366, 747
Bpu14I	TTCGAA	2 cut(s)	252, 622
BpuMI	CCSGG	1 cut(s)	408
Bsa29I	ATCGAT	1 cut(s)	777
BsaJI	CCNNGG	5 cut(s)	236, 327, 484, 583, 737
BsaXI	ACNNNNNCTCC	2 cut(s)	217, 247
Bsc4I	CCNNNNNNNGG	2 cut(s)	66, 379
Bse1I	ACTGG	1 cut(s)	120
Bse3DI	GCAATG	3 cut(s)	60, 145, 453
BseBI	CCWGG	2 cut(s)	485, 792
BseCI	ATCGAT	1 cut(s)	777
BseDI	CCNNGG	5 cut(s)	236, 327, 484, 583, 737
BseLI	CCNNNNNNNGG	2 cut(s)	66, 379
BseMI	GCAATG	3 cut(s)	60, 145, 453
BseMII	CTCAG	4 cut(s)	323, 357, 909, 921
BseNI	ACTGG	1 cut(s)	120
BseSI	GKGCMC	2 cut(s)	60, 83
BseXI	GCAGC	8 cut(s)	26, 89, 108, 111, 228, 481, 508, 940
Bsh1236I	CGCG	1 cut(s)	329
BshFI	GGCC	3 cut(s)	31, 161, 509
BshVI	ATCGAT	1 cut(s)	777
BsiHKAI	GWGCWC	2 cut(s)	173, 261
BsiSI	CCGG	1 cut(s)	408
BsiWI	CGTACG	1 cut(s)	9
BslI	CCNNNNNNNGG	2 cut(s)	66, 379
BsmAI	GTCTC	1 cut(s)	180
BsmBI	CGTCTC	1 cut(s)	180
BsnI	GGCC	3 cut(s)	31, 161, 509
Bsp119I	TTCGAA	2 cut(s)	252, 622
Bsp1286I	GDGCHC	4 cut(s)	60, 83, 173, 261
Bsp143I	GATC	3 cut(s)	336, 570, 847
BspACI	CCGC	5 cut(s)	32, 106, 327, 329, 951
BspANI	GGCC	3 cut(s)	31, 161, 509
BspCNI	CTCAG	4 cut(s)	322, 358, 908, 922
BspDI	ATCGAT	1 cut(s)	777
BspFNI	CGCG	1 cut(s)	329
BspHI	TCATGA	1 cut(s)	729
BspLI	GGNNCC	3 cut(s)	234, 372, 508
BspMAI	CTGCAG	2 cut(s)	526, 595
BspMI	ACCTGC	1 cut(s)	515
BspPI	GGATC	2 cut(s)	565, 855
BspQI	GCTCTTC	2 cut(s)	161, 249
BspT104I	TTCGAA	2 cut(s)	252, 622
BsrDI	GCAATG	3 cut(s)	60, 145, 453
BsrI	ACTGG	1 cut(s)	120
BssECI	CCNNGG	5 cut(s)	236, 327, 484, 583, 737
BssMI	GATC	3 cut(s)	336, 570, 847
BssSI	CACGAG	1 cut(s)	837
BssT1I	CCWWGG	3 cut(s)	236, 583, 737
Bst2BI	CACGAG	1 cut(s)	837
Bst2UI	CCWGG	2 cut(s)	485, 792
Bst4CI	ACNGT	2 cut(s)	478, 719
Bst6I	CTCTTC	3 cut(s)	161, 249, 699
BstAPI	GCANNNNNTGC	2 cut(s)	102, 953
BstBI	TTCGAA	2 cut(s)	252, 622
BstC8I	GCNNGC	2 cut(s)	492, 551
BstDEI	CTNAG	6 cut(s)	309, 366, 747, 796, 895, 930
BstDSI	CCRYGG	1 cut(s)	327
BstFNI	CGCG	1 cut(s)	329
BstHHI	GCGC	1 cut(s)	805
BstKTI	GATC	3 cut(s)	339, 573, 850
BstMAI	GTCTC	1 cut(s)	180
BstMBI	GATC	3 cut(s)	336, 570, 847
BstMWI	GCNNNNNNNGC	6 cut(s)	20, 102, 105, 694, 898, 953
BstNI	CCWGG	2 cut(s)	485, 792
BstNSI	RCATGY	2 cut(s)	277, 553
BstSCI	CCNGG	3 cut(s)	406, 483, 790
BstSFI	CTRYAG	2 cut(s)	522, 591
BstSLI	GKGCMC	2 cut(s)	60, 83
BstUI	CGCG	1 cut(s)	329
BstV1I	GCAGC	8 cut(s)	26, 89, 108, 111, 228, 481, 508, 940
Bsu15I	ATCGAT	1 cut(s)	777
BsuRI	GGCC	3 cut(s)	31, 161, 509
BsuTUI	ATCGAT	1 cut(s)	777
BtgI	CCRYGG	1 cut(s)	327
BtsI	GCAGTG	1 cut(s)	81
BtsIMutI	CAGTG	1 cut(s)	81
BveI	ACCTGC	1 cut(s)	515
Cac8I	GCNNGC	2 cut(s)	492, 551
CaiI	CAGNNNCTG	1 cut(s)	102
CciI	TCATGA	1 cut(s)	729
CfoI	GCGC	1 cut(s)	805
Cfr13I	GGNCC	2 cut(s)	370, 507
Cfr42I	CCGCGG	1 cut(s)	330
ClaI	ATCGAT	1 cut(s)	777
Csp6I	GTAC	2 cut(s)	10, 640
CviAII	CATG	6 cut(s)	163, 274, 322, 550, 730, 960
CviQI	GTAC	2 cut(s)	10, 640
DdeI	CTNAG	6 cut(s)	309, 366, 747, 796, 895, 930
DpnI	GATC	3 cut(s)	338, 572, 849
DpnII	GATC	3 cut(s)	336, 570, 847
DraIII	CACNNNGTG	1 cut(s)	410
Eam1104I	CTCTTC	3 cut(s)	161, 249, 699
EarI	CTCTTC	3 cut(s)	161, 249, 699
Ecl136II	GAGCTC	2 cut(s)	171, 259
Eco130I	CCWWGG	3 cut(s)	236, 583, 737
Eco24I	GRGCYC	2 cut(s)	173, 261
Eco47I	GGWCC	1 cut(s)	370
Eco53kI	GAGCTC	2 cut(s)	171, 259
EcoICRI	GAGCTC	2 cut(s)	171, 259
EcoO109I	RGGNCCY	2 cut(s)	370, 507
EcoRII	CCWGG	2 cut(s)	483, 790
EcoT14I	CCWWGG	3 cut(s)	236, 583, 737
EcoT38I	GRGCYC	2 cut(s)	173, 261
ErhI	CCWWGG	3 cut(s)	236, 583, 737
Esp3I	CGTCTC	1 cut(s)	180
FaeI	CATG	6 cut(s)	166, 277, 325, 553, 733, 963
FalI	AAGNNNNNCTT	2 cut(s)	779, 811
FatI	CATG	6 cut(s)	162, 273, 321, 549, 729, 959
FauI	CCCGC	1 cut(s)	958
FbaI	TGATCA	1 cut(s)	336
FriOI	GRGCYC	2 cut(s)	173, 261
FspBI	CTAG	1 cut(s)	359
GlaI	GCGC	1 cut(s)	804
HaeIII	GGCC	3 cut(s)	31, 161, 509
HapII	CCGG	1 cut(s)	408
HhaI	GCGC	1 cut(s)	805
Hin1II	CATG	6 cut(s)	166, 277, 325, 553, 733, 963
Hin6I	GCGC	1 cut(s)	803
HinP1I	GCGC	1 cut(s)	803
HinfI	GANTC	7 cut(s)	249, 291, 543, 624, 675, 733, 840
HpaII	CCGG	1 cut(s)	408
HphI	GGTGA	1 cut(s)	396
Hpy166II	GTNNAC	1 cut(s)	640
Hpy188I	TCNGA	5 cut(s)	132, 288, 629, 898, 913
Hpy188III	TCNNGA	4 cut(s)	359, 672, 730, 879
Hpy8I	GTNNAC	1 cut(s)	640
Hpy99I	CGWCG	1 cut(s)	132
HpyAV	CCTTC	2 cut(s)	857, 928
HpyCH4III	ACNGT	2 cut(s)	478, 719
HpyCH4IV	ACGT	1 cut(s)	8
HpyCH4V	TGCA	7 cut(s)	65, 446, 459, 524, 549, 560, 593
HpyF10VI	GCNNNNNNNGC	6 cut(s)	20, 102, 105, 694, 898, 953
HpyF3I	CTNAG	6 cut(s)	309, 366, 747, 796, 895, 930
HpySE526I	ACGT	1 cut(s)	8
Hsp92II	CATG	6 cut(s)	166, 277, 325, 553, 733, 963
HspAI	GCGC	1 cut(s)	803
Ksp22I	TGATCA	1 cut(s)	336
KspI	CCGCGG	1 cut(s)	330
Kzo9I	GATC	3 cut(s)	336, 570, 847
LguI	GCTCTTC	2 cut(s)	161, 249
LmnI	GCTCC	2 cut(s)	238, 867
Lsp1109I	GCAGC	8 cut(s)	26, 89, 108, 111, 228, 481, 508, 940
LweI	GCATC	2 cut(s)	352, 433
MaeI	CTAG	1 cut(s)	359
MaeII	ACGT	1 cut(s)	8
MaeIII	GTNAC	1 cut(s)	418
MalI	GATC	3 cut(s)	338, 572, 849
MboI	GATC	3 cut(s)	336, 570, 847
MboII	GAAGA	4 cut(s)	33, 178, 266, 716
MfeI	CAATTG	1 cut(s)	202
MhlI	GDGCHC	4 cut(s)	60, 83, 173, 261
MluCI	AATT	7 cut(s)	153, 202, 389, 400, 452, 653, 724
MlyI	GAGTC	1 cut(s)	849
MmeI	TCCRAC	1 cut(s)	110
MnlI	CCTC	7 cut(s)	69, 98, 361, 590, 700, 904, 919
MseI	TTAA	3 cut(s)	156, 387, 651
MslI	CAYNNNNRTG	1 cut(s)	272
MspA1I	CMGCKG	3 cut(s)	102, 329, 953
MspI	CCGG	1 cut(s)	408
MspR9I	CCNGG	3 cut(s)	408, 485, 792
MunI	CAATTG	1 cut(s)	202
MvaI	CCWGG	2 cut(s)	485, 792
MvnI	CGCG	1 cut(s)	329
MwoI	GCNNNNNNNGC	6 cut(s)	20, 102, 105, 694, 898, 953
NciI	CCSGG	1 cut(s)	408
NdeII	GATC	3 cut(s)	336, 570, 847
NlaIII	CATG	6 cut(s)	166, 277, 325, 553, 733, 963
NlaIV	GGNNCC	3 cut(s)	234, 372, 508
NspI	RCATGY	2 cut(s)	277, 553
NspV	TTCGAA	2 cut(s)	252, 622
PaeI	GCATGC	1 cut(s)	553
PagI	TCATGA	1 cut(s)	729
PciSI	GCTCTTC	2 cut(s)	161, 249
PcsI	WCGNNNNNNNCGW	1 cut(s)	258
PfeI	GAWTC	6 cut(s)	249, 291, 543, 624, 675, 733
Pfl23II	CGTACG	1 cut(s)	9
PflFI	GACNNNGTC	1 cut(s)	193
PleI	GAGTC	1 cut(s)	848
PpsI	GAGTC	1 cut(s)	848
PpuMI	RGGWCCY	1 cut(s)	370
Psp124BI	GAGCTC	2 cut(s)	173, 261
Psp5II	RGGWCCY	1 cut(s)	370
Psp6I	CCWGG	2 cut(s)	483, 790
PspGI	CCWGG	2 cut(s)	483, 790
PspLI	CGTACG	1 cut(s)	9
PspN4I	GGNNCC	3 cut(s)	234, 372, 508
PspPI	GGNCC	2 cut(s)	370, 507
PspPPI	RGGWCCY	1 cut(s)	370
PstI	CTGCAG	2 cut(s)	526, 595
PstNI	CAGNNNCTG	1 cut(s)	102
PsyI	GACNNNGTC	1 cut(s)	193
PvuII	CAGCTG	1 cut(s)	102
RsaI	GTAC	2 cut(s)	11, 641
RsaNI	GTAC	2 cut(s)	10, 640
RseI	CAYNNNNRTG	1 cut(s)	272
SacI	GAGCTC	2 cut(s)	173, 261
SacII	CCGCGG	1 cut(s)	330
SapI	GCTCTTC	2 cut(s)	161, 249
SaqAI	TTAA	3 cut(s)	156, 387, 651
Sau3AI	GATC	3 cut(s)	336, 570, 847
Sau96I	GGNCC	2 cut(s)	370, 507
SchI	GAGTC	1 cut(s)	849
ScrFI	CCNGG	3 cut(s)	408, 485, 792
SduI	GDGCHC	4 cut(s)	60, 83, 173, 261
SfaNI	GCATC	2 cut(s)	352, 433
SfcI	CTRYAG	2 cut(s)	522, 591
Sfr303I	CCGCGG	1 cut(s)	330
SfuI	TTCGAA	2 cut(s)	252, 622
SgrBI	CCGCGG	1 cut(s)	330
SinI	GGWCC	1 cut(s)	370
SmiMI	CAYNNNNRTG	1 cut(s)	272
SphI	GCATGC	1 cut(s)	553
Sse9I	AATT	7 cut(s)	153, 202, 389, 400, 452, 653, 724
SsiI	CCGC	5 cut(s)	32, 106, 327, 329, 951
SspI	AATATT	1 cut(s)	666
SspMI	CTAG	1 cut(s)	359
SstI	GAGCTC	2 cut(s)	173, 261
StyD4I	CCNGG	3 cut(s)	406, 483, 790
StyI	CCWWGG	3 cut(s)	236, 583, 737
TaaI	ACNGT	2 cut(s)	478, 719
TaiI	ACGT	1 cut(s)	11
TaqI	TCGA	6 cut(s)	197, 252, 261, 622, 777, 878
TasI	AATT	7 cut(s)	153, 202, 389, 400, 452, 653, 724
TauI	GCSGC	2 cut(s)	34, 108
TfiI	GAWTC	6 cut(s)	249, 291, 543, 624, 675, 733
Tru1I	TTAA	3 cut(s)	156, 387, 651
Tru9I	TTAA	3 cut(s)	156, 387, 651
TscAI	CASTG	1 cut(s)	88
TseI	GCWGC	8 cut(s)	14, 96, 99, 102, 241, 494, 521, 953
TspDTI	ATGAA	4 cut(s)	179, 464, 718, 746
TspGWI	ACGGA	4 cut(s)	82, 204, 272, 623
TspRI	CASTG	1 cut(s)	88
Tth111I	GACNNNGTC	1 cut(s)	193
VpaK11BI	GGWCC	1 cut(s)	370
XbaI	TCTAGA	1 cut(s)	358
XceI	RCATGY	2 cut(s)	277, 553
XcmI	CCANNNNNNNNNTGG	1 cut(s)	581
XspI	CTAG	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.