Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0003024

Physical Location & Seq

Genomic Coordinates Forward (+)

2496648 .. 2497317

Gene Structure 670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g03020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGATGACGTACGCAGCCACAGCTTCAAGGCCGCTGTGTTCTTCACAAACCCAAGTGCCCATTTCGCCGATTGTGAAGGGCACTGTCCTCAACAGCAATGGTATTATCAATTGCCGTCGGAGAAGCAATGGCGTCTGTGTGATTAAGGCCATGAAAAGCTCGTCTCCCCCACGACTGACCTTGTCGAGCAATTGGGATTTTCCCTCAGCTACTACTTCAGCTCCAAGGCTGCCCAGATTCGAAGAGCTCGATACCACCAACATGCTTCTTCGTCAGAGAATCATCTTTCTGGGTTCTCAGGTCGATGACATGACGGCGGATTTGATCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009368 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009840 GO:0009941 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

111

Amino Acids

12.07

Weight (kDa)

9.41

Isoelectric Point (pI)

46.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66670
fragaria_vesca	FvH4_7g04110
malus_domestica	MD02G1275200.v1.1 MD07G1043100.v1.1
prunus_persica	Prupe.2G045800_v2.0.a1 Prupe.2G045800_v2.0.a1 Prupe.2G045800_v2.0.a1
pyrus_communis	pycom02g23530 pycom07g03020
rosa_chinensis	RchiOBHm_Chr1g0327981 RchiOBHm_Chr1g0372191
rosa_laevigata	RLG00000008647 RLG00000012938 RLG00000021509 RLG00000029950
rosa_multiflora	Rmu_sc0000064.1_g000027 Rmu_sc0000272.1_g000043 Rmu_sc0001755.1_g000019 Rmu_sc0003977.1_g000001 Rmu_sc0007782.1_g000018 Rmu_ssc0000309.1_g000031
rosa_roxburghii	Rroxscaffold_4G00322040
rosa_rugosa	Rorug01G0073100
rosa_samantha	Rh1AG089900 Rh1BG071800 Rh1BG342100 Rh1CG086900 Rh1DG093600 Rh2BG432000 Rh2CG303000 Rh6AG065100 Rh6AG270700 Rh6BG088100 Rh6DG224400 Rh7DG308700
rosa_wichuraiana	Rw0G022860 Rw1G006940 Rw1G006960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	32, 317
AcuI	CTGAAG	1 cut(s)	201
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	1 cut(s)	11
AgsI	TTSAA	1 cut(s)	27
AluBI	AGCT	5 cut(s)	23, 159, 209, 221, 247
AluI	AGCT	5 cut(s)	23, 159, 209, 221, 247
Alw21I	GWGCWC	1 cut(s)	249
Alw26I	GTCTC	1 cut(s)	168
AoxI	GGCC	2 cut(s)	29, 147
ApeKI	GCWGC	2 cut(s)	14, 229
ArsI	GACNNNNNNTTYG	1 cut(s)	304
AsuII	TTCGAA	1 cut(s)	240
BaeGI	GKGCMC	2 cut(s)	60, 83
BanII	GRGCYC	1 cut(s)	249
Bbv12I	GWGCWC	1 cut(s)	249
BbvCI	CCTCAGC	1 cut(s)	205
BbvI	GCAGC	2 cut(s)	26, 216
BceAI	ACGGC	2 cut(s)	99, 330
BcoDI	GTCTC	1 cut(s)	168
BisI	GCNGC	3 cut(s)	15, 32, 230
BlsI	GCNGC	3 cut(s)	16, 33, 231
Bpu10I	CCTNAGC	1 cut(s)	205
Bpu14I	TTCGAA	1 cut(s)	240
Bsa29I	ATCGAT	1 cut(s)	327
BsaHI	GRCGYC	1 cut(s)	132
BsaJI	CCNNGG	1 cut(s)	224
BsaXI	ACNNNNNCTCC	2 cut(s)	205, 235
Bse3DI	GCAATG	2 cut(s)	103, 133
BseCI	ATCGAT	1 cut(s)	327
BseDI	CCNNGG	1 cut(s)	224
BseMI	GCAATG	2 cut(s)	103, 133
BseMII	CTCAG	2 cut(s)	219, 311
BseSI	GKGCMC	2 cut(s)	60, 83
BseXI	GCAGC	2 cut(s)	26, 216
BshFI	GGCC	2 cut(s)	31, 149
BshVI	ATCGAT	1 cut(s)	327
BsiHKAI	GWGCWC	1 cut(s)	249
BsiWI	CGTACG	1 cut(s)	9
BsmAI	GTCTC	1 cut(s)	168
BsmBI	CGTCTC	1 cut(s)	168
BsnI	GGCC	2 cut(s)	31, 149
Bsp119I	TTCGAA	1 cut(s)	240
Bsp1286I	GDGCHC	3 cut(s)	60, 83, 249
Bsp143I	GATC	1 cut(s)	324
BspACI	CCGC	2 cut(s)	32, 317
BspANI	GGCC	2 cut(s)	31, 149
BspCNI	CTCAG	2 cut(s)	218, 310
BspDI	ATCGAT	1 cut(s)	327
BspQI	GCTCTTC	1 cut(s)	237
BspT104I	TTCGAA	1 cut(s)	240
BsrDI	GCAATG	2 cut(s)	103, 133
BssECI	CCNNGG	1 cut(s)	224
BssMI	GATC	1 cut(s)	324
BssNI	GRCGYC	1 cut(s)	132
BssT1I	CCWWGG	1 cut(s)	224
Bst4CI	ACNGT	1 cut(s)	85
Bst6I	CTCTTC	1 cut(s)	237
BstACI	GRCGYC	1 cut(s)	132
BstBI	TTCGAA	1 cut(s)	240
BstDEI	CTNAG	2 cut(s)	205, 297
BstKTI	GATC	1 cut(s)	327
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	1 cut(s)	324
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 64
BstNSI	RCATGY	1 cut(s)	265
BstSLI	GKGCMC	2 cut(s)	60, 83
BstV1I	GCAGC	2 cut(s)	26, 216
Bsu15I	ATCGAT	1 cut(s)	327
BsuRI	GGCC	2 cut(s)	31, 149
BsuTUI	ATCGAT	1 cut(s)	327
BtsIMutI	CAGTG	1 cut(s)	81
ClaI	ATCGAT	1 cut(s)	327
CseI	GACGC	1 cut(s)	121
Csp6I	GTAC	1 cut(s)	10
CviAII	CATG	3 cut(s)	151, 262, 310
CviJI	RGCY	9 cut(s)	17, 23, 31, 149, 159, 209, 221, 229, 247
CviKI_1	RGCY	9 cut(s)	17, 23, 31, 149, 159, 209, 221, 229, 247
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	2 cut(s)	205, 297
DpnI	GATC	1 cut(s)	326
DpnII	GATC	1 cut(s)	324
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
EciI	GGCGGA	1 cut(s)	332
Ecl136II	GAGCTC	1 cut(s)	247
Eco130I	CCWWGG	1 cut(s)	224
Eco24I	GRGCYC	1 cut(s)	249
Eco53kI	GAGCTC	1 cut(s)	247
Eco57I	CTGAAG	1 cut(s)	201
EcoICRI	GAGCTC	1 cut(s)	247
EcoT14I	CCWWGG	1 cut(s)	224
EcoT38I	GRGCYC	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	224
Esp3I	CGTCTC	1 cut(s)	168
FaeI	CATG	3 cut(s)	154, 265, 313
FaiI	YATR	3 cut(s)	152, 263, 311
FatI	CATG	3 cut(s)	150, 261, 309
Fnu4HI	GCNGC	3 cut(s)	15, 32, 230
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	3 cut(s)	15, 32, 230
GluI	GCNGC	3 cut(s)	15, 32, 230
HaeIII	GGCC	2 cut(s)	31, 149
HgaI	GACGC	1 cut(s)	121
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	3 cut(s)	154, 265, 313
HinfI	GANTC	2 cut(s)	237, 279
Hpy188I	TCNGA	2 cut(s)	120, 276
Hpy99I	CGWCG	1 cut(s)	120
HpyAV	CCTTC	1 cut(s)	70
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4IV	ACGT	1 cut(s)	8
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 64
HpyF3I	CTNAG	2 cut(s)	205, 297
HpySE526I	ACGT	1 cut(s)	8
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	3 cut(s)	154, 265, 313
Kzo9I	GATC	1 cut(s)	324
LguI	GCTCTTC	1 cut(s)	237
LmnI	GCTCC	1 cut(s)	226
LpnPI	CCDG	3 cut(s)	247, 275, 284
Lsp1109I	GCAGC	2 cut(s)	26, 216
MaeII	ACGT	1 cut(s)	8
MalI	GATC	1 cut(s)	326
MboI	GATC	1 cut(s)	324
MboII	GAAGA	3 cut(s)	33, 254, 260
MfeI	CAATTG	2 cut(s)	109, 190
MhlI	GDGCHC	3 cut(s)	60, 83, 249
MluCI	AATT	2 cut(s)	109, 190
MmeI	TCCRAC	1 cut(s)	98
MnlI	CCTC	2 cut(s)	98, 214
MseI	TTAA	1 cut(s)	144
MslI	CAYNNNNRTG	1 cut(s)	260
MspA1I	CMGCKG	1 cut(s)	34
MunI	CAATTG	2 cut(s)	109, 190
MwoI	GCNNNNNNNGC	2 cut(s)	20, 64
NdeII	GATC	1 cut(s)	324
NlaIII	CATG	3 cut(s)	154, 265, 313
NspI	RCATGY	1 cut(s)	265
NspV	TTCGAA	1 cut(s)	240
PciSI	GCTCTTC	1 cut(s)	237
PcsI	WCGNNNNNNNCGW	1 cut(s)	246
PfeI	GAWTC	2 cut(s)	237, 279
Pfl23II	CGTACG	1 cut(s)	9
PflFI	GACNNNGTC	1 cut(s)	181
PkrI	GCNGC	3 cut(s)	16, 33, 231
Psp124BI	GAGCTC	1 cut(s)	249
PspLI	CGTACG	1 cut(s)	9
PsyI	GACNNNGTC	1 cut(s)	181
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
RseI	CAYNNNNRTG	1 cut(s)	260
SacI	GAGCTC	1 cut(s)	249
SapI	GCTCTTC	1 cut(s)	237
SaqAI	TTAA	1 cut(s)	144
SatI	GCNGC	3 cut(s)	15, 32, 230
Sau3AI	GATC	1 cut(s)	324
SduI	GDGCHC	3 cut(s)	60, 83, 249
SetI	ASST	8 cut(s)	11, 25, 161, 182, 211, 223, 249, 303
SfuI	TTCGAA	1 cut(s)	240
SmiMI	CAYNNNNRTG	1 cut(s)	260
Sse9I	AATT	2 cut(s)	109, 190
SsiI	CCGC	2 cut(s)	32, 317
SstI	GAGCTC	1 cut(s)	249
StyI	CCWWGG	1 cut(s)	224
TaaI	ACNGT	1 cut(s)	85
TaiI	ACGT	1 cut(s)	11
TaqI	TCGA	5 cut(s)	185, 240, 249, 303, 327
TasI	AATT	2 cut(s)	109, 190
TauI	GCSGC	1 cut(s)	34
TfiI	GAWTC	2 cut(s)	237, 279
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TscAI	CASTG	1 cut(s)	88
TseI	GCWGC	2 cut(s)	14, 229
TspDTI	ATGAA	1 cut(s)	167
TspRI	CASTG	1 cut(s)	88
Tth111I	GACNNNGTC	1 cut(s)	181
XceI	RCATGY	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.