Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003024

Physical Location & Seq

Genomic Coordinates Forward (+)

24086580 .. 24087117

Gene Structure 538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012938

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGATGACATACACAGCCTCAGCTTCAAGGCCTCTCAGCTTCAACACCCAACTGACCATTGTCAAGAGCAATGGTCTTAAGAGCACTAGCGCTTCTAGTATCATCGATTGTAGCACAACAACAAGGAGGAAGCGTGTCGGTTTGGTTAAAGGCTCGTCGCCTACAAGACCCACCTTGTCCAGCAATTGGGATTTTCAGTTTGCCGCTACTACTACTACTTCAGCTCTACGCGTCCCCAGATTCGAAGAGCTCGATACCACCAACATGCTCCTCCGTCAGAGAATCATCTTCTTGGGTTCTCAGATGGAATTTATGGGTTTTGTTTCATTGAGTTTTGATGATGGGCTGGTGGATGATATGGCGGCGGATTTGATAATAAGTCAATTGCTATTTTTGGATGCTGAAGACGCTAAAAAGGACATTACATTGTTTATCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009368 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009840 GO:0009941 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

147

Amino Acids

16.16

Weight (kDa)

6.22

Isoelectric Point (pI)

28.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66670
fragaria_vesca	FvH4_7g04110
malus_domestica	MD02G1275200.v1.1 MD07G1043100.v1.1
prunus_persica	Prupe.2G045800_v2.0.a1 Prupe.2G045800_v2.0.a1 Prupe.2G045800_v2.0.a1
pyrus_communis	pycom02g23530 pycom07g03020
rosa_chinensis	RchiOBHm_Chr1g0327981 RchiOBHm_Chr1g0372191
rosa_laevigata	RLG00000008647 RLG00000012938 RLG00000021509 RLG00000029950
rosa_multiflora	Rmu_sc0000064.1_g000027 Rmu_sc0000272.1_g000043 Rmu_sc0001755.1_g000019 Rmu_sc0003977.1_g000001 Rmu_sc0007782.1_g000018 Rmu_ssc0000309.1_g000031
rosa_roxburghii	Rroxscaffold_4G00322040
rosa_rugosa	Rorug01G0073100
rosa_samantha	Rh1AG089900 Rh1BG071800 Rh1BG342100 Rh1CG086900 Rh1DG093600 Rh2BG432000 Rh2CG303000 Rh6AG065100 Rh6AG270700 Rh6BG088100 Rh6DG224400 Rh7DG308700
rosa_wichuraiana	Rw0G022860 Rw1G006940 Rw1G006960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	186
AccII	CGCG	1 cut(s)	231
AciI	CCGC	3 cut(s)	204, 362, 365
AcsI	RAATTY	1 cut(s)	308
AcuI	CTGAAG	2 cut(s)	204, 423
AfeI	AGCGCT	1 cut(s)	91
AfiI	CCNNNNNNNGG	1 cut(s)	186
AflII	CTTAAG	1 cut(s)	77
AflIII	ACRYGT	1 cut(s)	229
AgsI	TTSAA	2 cut(s)	27, 43
AluBI	AGCT	4 cut(s)	23, 39, 224, 250
AluI	AGCT	4 cut(s)	23, 39, 224, 250
Alw21I	GWGCWC	2 cut(s)	86, 252
Aor51HI	AGCGCT	1 cut(s)	91
AoxI	GGCC	1 cut(s)	29
ApoI	RAATTY	1 cut(s)	308
AspLEI	GCGC	1 cut(s)	92
AsuII	TTCGAA	1 cut(s)	243
BanII	GRGCYC	1 cut(s)	252
BbsI	GAAGAC	1 cut(s)	411
Bbv12I	GWGCWC	2 cut(s)	86, 252
BbvCI	CCTCAGC	1 cut(s)	19
BccI	CCATC	2 cut(s)	298, 335
BfaI	CTAG	2 cut(s)	87, 96
BfoI	RGCGCY	1 cut(s)	93
BfrI	CTTAAG	1 cut(s)	77
BisI	GCNGC	2 cut(s)	204, 363
BlsI	GCNGC	2 cut(s)	205, 364
BmsI	GCATC	1 cut(s)	388
BoxI	GACNNNNGTC	1 cut(s)	59
BpiI	GAAGAC	1 cut(s)	411
Bpu10I	CCTNAGC	1 cut(s)	19
Bpu14I	TTCGAA	1 cut(s)	243
Bsa29I	ATCGAT	1 cut(s)	105
BsaXI	ACNNNNNCTCC	2 cut(s)	118, 148
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse3DI	GCAATG	1 cut(s)	76
BseCI	ATCGAT	1 cut(s)	105
BseGI	GGATG	2 cut(s)	358, 403
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseMI	GCAATG	1 cut(s)	76
BseMII	CTCAG	3 cut(s)	33, 49, 314
BseRI	GAGGAG	1 cut(s)	260
Bsh1236I	CGCG	1 cut(s)	231
BshFI	GGCC	1 cut(s)	31
BshVI	ATCGAT	1 cut(s)	105
BsiHKAI	GWGCWC	2 cut(s)	86, 252
BslFI	GGGAC	1 cut(s)	218
BslI	CCNNNNNNNGG	1 cut(s)	186
BsmFI	GGGAC	1 cut(s)	218
BsnI	GGCC	1 cut(s)	31
Bsp119I	TTCGAA	1 cut(s)	243
Bsp1286I	GDGCHC	2 cut(s)	86, 252
BspACI	CCGC	3 cut(s)	204, 362, 365
BspANI	GGCC	1 cut(s)	31
BspCNI	CTCAG	3 cut(s)	32, 48, 313
BspDI	ATCGAT	1 cut(s)	105
BspFNI	CGCG	1 cut(s)	231
BspQI	GCTCTTC	1 cut(s)	240
BspT104I	TTCGAA	1 cut(s)	243
BspTI	CTTAAG	1 cut(s)	77
BsrDI	GCAATG	1 cut(s)	76
Bst6I	CTCTTC	1 cut(s)	240
BstAFI	CTTAAG	1 cut(s)	77
BstBI	TTCGAA	1 cut(s)	243
BstDEI	CTNAG	3 cut(s)	19, 35, 300
BstF5I	GGATG	2 cut(s)	358, 403
BstFNI	CGCG	1 cut(s)	231
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	1 cut(s)	92
BstMWI	GCNNNNNNNGC	1 cut(s)	407
BstNSI	RCATGY	1 cut(s)	268
BstPAI	GACNNNNGTC	1 cut(s)	59
BstUI	CGCG	1 cut(s)	231
BstV2I	GAAGAC	1 cut(s)	411
Bsu15I	ATCGAT	1 cut(s)	105
BsuRI	GGCC	1 cut(s)	31
BsuTUI	ATCGAT	1 cut(s)	105
BtsCI	GGATG	2 cut(s)	358, 403
CfoI	GCGC	1 cut(s)	92
ClaI	ATCGAT	1 cut(s)	105
CseI	GACGC	2 cut(s)	220, 416
CviAII	CATG	1 cut(s)	265
CviJI	RGCY	8 cut(s)	17, 23, 31, 39, 153, 224, 250, 346
CviKI_1	RGCY	8 cut(s)	17, 23, 31, 39, 153, 224, 250, 346
DdeI	CTNAG	3 cut(s)	19, 35, 300
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
EciI	GGCGGA	1 cut(s)	380
Ecl136II	GAGCTC	1 cut(s)	250
Eco147I	AGGCCT	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	252
Eco47III	AGCGCT	1 cut(s)	91
Eco53kI	GAGCTC	1 cut(s)	250
Eco57I	CTGAAG	2 cut(s)	204, 423
EcoICRI	GAGCTC	1 cut(s)	250
EcoT38I	GRGCYC	1 cut(s)	252
FaeI	CATG	1 cut(s)	268
FaiI	YATR	4 cut(s)	10, 266, 314, 359
FaqI	GGGAC	1 cut(s)	218
FatI	CATG	1 cut(s)	264
Fnu4HI	GCNGC	2 cut(s)	204, 363
FokI	GGATG	2 cut(s)	365, 410
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	2 cut(s)	204, 363
FspBI	CTAG	2 cut(s)	87, 96
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	2 cut(s)	204, 363
HaeII	RGCGCY	1 cut(s)	93
HaeIII	GGCC	1 cut(s)	31
HgaI	GACGC	2 cut(s)	220, 416
HhaI	GCGC	1 cut(s)	92
Hin1II	CATG	1 cut(s)	268
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HinfI	GANTC	2 cut(s)	240, 282
Hpy188I	TCNGA	2 cut(s)	279, 303
Hpy188III	TCNNGA	1 cut(s)	64
Hpy99I	CGWCG	1 cut(s)	160
HpyF10VI	GCNNNNNNNGC	1 cut(s)	407
HpyF3I	CTNAG	3 cut(s)	19, 35, 300
Hsp92II	CATG	1 cut(s)	268
HspAI	GCGC	1 cut(s)	90
LguI	GCTCTTC	1 cut(s)	240
LmnI	GCTCC	1 cut(s)	273
LpnPI	CCDG	3 cut(s)	193, 250, 332
LweI	GCATC	1 cut(s)	388
MaeI	CTAG	2 cut(s)	87, 96
MboII	GAAGA	3 cut(s)	257, 280, 416
MfeI	CAATTG	2 cut(s)	184, 383
MhlI	GDGCHC	2 cut(s)	86, 252
MluCI	AATT	4 cut(s)	184, 308, 383, 436
MluI	ACGCGT	1 cut(s)	229
MnlI	CCTC	4 cut(s)	28, 42, 120, 281
MseI	TTAA	2 cut(s)	78, 147
MslI	CAYNNNNRTG	1 cut(s)	263
MspCI	CTTAAG	1 cut(s)	77
MunI	CAATTG	2 cut(s)	184, 383
MvnI	CGCG	1 cut(s)	231
MwoI	GCNNNNNNNGC	1 cut(s)	407
NlaIII	CATG	1 cut(s)	268
NspI	RCATGY	1 cut(s)	268
NspV	TTCGAA	1 cut(s)	243
PceI	AGGCCT	1 cut(s)	31
PciSI	GCTCTTC	1 cut(s)	240
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PfeI	GAWTC	2 cut(s)	240, 282
PflMI	CCANNNNNTGG	1 cut(s)	186
PkrI	GCNGC	2 cut(s)	205, 364
PshAI	GACNNNNGTC	1 cut(s)	59
Psp124BI	GAGCTC	1 cut(s)	252
RseI	CAYNNNNRTG	1 cut(s)	263
SacI	GAGCTC	1 cut(s)	252
SapI	GCTCTTC	1 cut(s)	240
SaqAI	TTAA	2 cut(s)	78, 147
SatI	GCNGC	2 cut(s)	204, 363
SduI	GDGCHC	2 cut(s)	86, 252
SetI	ASST	5 cut(s)	25, 41, 176, 226, 252
SfaNI	GCATC	1 cut(s)	388
SfuI	TTCGAA	1 cut(s)	243
SmiMI	CAYNNNNRTG	1 cut(s)	263
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
Sse9I	AATT	4 cut(s)	184, 308, 383, 436
SseBI	AGGCCT	1 cut(s)	31
SsiI	CCGC	3 cut(s)	204, 362, 365
SspMI	CTAG	2 cut(s)	87, 96
SstI	GAGCTC	1 cut(s)	252
StuI	AGGCCT	1 cut(s)	31
TaqI	TCGA	3 cut(s)	105, 243, 252
TasI	AATT	4 cut(s)	184, 308, 383, 436
TauI	GCSGC	2 cut(s)	206, 365
TfiI	GAWTC	2 cut(s)	240, 282
Tru1I	TTAA	2 cut(s)	78, 147
Tru9I	TTAA	2 cut(s)	78, 147
TspDTI	ATGAA	1 cut(s)	315
TspGWI	ACGGA	1 cut(s)	263
Van91I	CCANNNNNTGG	1 cut(s)	186
Vha464I	CTTAAG	1 cut(s)	77
XapI	RAATTY	1 cut(s)	308
XceI	RCATGY	1 cut(s)	268
XspI	CTAG	2 cut(s)	87, 96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.