Rh6DG224400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0003024
Physical Location & Seq
Reverse (-)
40250317 .. 40271276
20960 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG224400.1

Sequence Viewer

Length: 321 bp
ATGCAATCTCAGATCCCAACGGATTCGAATCGGAGCTCAGATACGCAATCTCAGATCCCGGCTGTGGGAACGAGGCCGAAGCTGCAAGAAGAGGTTGGAGTTACCTTCGAAGGCGGAGACGATGTCGTCGCTGTCGTTATTGGACCTGACGCCGGAGCCGTAAGGCCAGGGCTTGTTTACAACGATGTGAAGAAACTAGATGTGTGGCAAGAGATGCTTTCCACATTGCAATTTCTCTTCAGGTCCAAACCTGGCAGAAGGCGTGGGAGTATTCACATGTTGAGTAGTTTTTGCATTGTCTACCACTACATATCTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.71

Weight (kDa)

6.71

Isoelectric Point (pI)

59.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 125
AccI GTMKAC 1 cut(s) 300
AciI CCGC 1 cut(s) 114
AclWI GGATC 2 cut(s) 7, 49
AcuI CTGAAG 1 cut(s) 223
AcyI GRCGYC 1 cut(s) 150
AfiI CCNNNNNNNGG 3 cut(s) 64, 65, 152
AflIII ACRYGT 1 cut(s) 276
AjnI CCWGG 2 cut(s) 166, 250
AluBI AGCT 2 cut(s) 36, 82
AluI AGCT 2 cut(s) 36, 82
Alw21I GWGCWC 1 cut(s) 38
Alw26I GTCTC 1 cut(s) 111
AlwI GGATC 2 cut(s) 7, 49
AoxI GGCC 2 cut(s) 74, 164
ApeKI GCWGC 1 cut(s) 82
AspS9I GGNCC 2 cut(s) 143, 243
AsuC2I CCSGG 1 cut(s) 59
AsuII TTCGAA 2 cut(s) 26, 108
AvaII GGWCC 2 cut(s) 143, 243
BanII GRGCYC 1 cut(s) 38
Bbv12I GWGCWC 1 cut(s) 38
BbvI GCAGC 1 cut(s) 69
BceAI ACGGC 1 cut(s) 143
BciT130I CCWGG 2 cut(s) 168, 252
BcnI CCSGG 1 cut(s) 59
BcoDI GTCTC 1 cut(s) 111
BfaI CTAG 1 cut(s) 197
BisI GCNGC 1 cut(s) 83
BlsI GCNGC 1 cut(s) 84
Bme1390I CCNGG 3 cut(s) 59, 168, 252
Bme18I GGWCC 2 cut(s) 143, 243
BmgT120I GGNCC 2 cut(s) 143, 243
BmiI GGNNCC 1 cut(s) 157
BmrFI CCNGG 3 cut(s) 59, 168, 252
BmsI GCATC 1 cut(s) 204
Bpu14I TTCGAA 2 cut(s) 26, 108
BpuMI CCSGG 1 cut(s) 59
BsaBI GATNNNNATC 1 cut(s) 27
BsaHI GRCGYC 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 167
BsaXI ACNNNNNCTCC 2 cut(s) 108, 138
Bsc4I CCNNNNNNNGG 3 cut(s) 64, 65, 152
Bse3DI GCAATG 1 cut(s) 224
Bse8I GATNNNNATC 1 cut(s) 27
BseBI CCWGG 2 cut(s) 168, 252
BseDI CCNNGG 1 cut(s) 167
BseJI GATNNNNATC 1 cut(s) 27
BseLI CCNNNNNNNGG 3 cut(s) 64, 65, 152
BseMI GCAATG 1 cut(s) 224
BseMII CTCAG 3 cut(s) 23, 51, 65
BseXI GCAGC 1 cut(s) 69
BshFI GGCC 2 cut(s) 76, 166
BsiHKAI GWGCWC 1 cut(s) 38
BsiSI CCGG 2 cut(s) 59, 153
BslI CCNNNNNNNGG 3 cut(s) 64, 65, 152
BsmAI GTCTC 1 cut(s) 111
BsmBI CGTCTC 1 cut(s) 111
BsnI GGCC 2 cut(s) 76, 166
Bsp119I TTCGAA 2 cut(s) 26, 108
Bsp1286I GDGCHC 1 cut(s) 38
Bsp143I GATC 2 cut(s) 12, 54
BspACI CCGC 1 cut(s) 114
BspANI GGCC 2 cut(s) 76, 166
BspCNI CTCAG 3 cut(s) 22, 50, 64
BspLI GGNNCC 1 cut(s) 157
BspPI GGATC 2 cut(s) 7, 49
BspT104I TTCGAA 2 cut(s) 26, 108
BsrDI GCAATG 1 cut(s) 224
BssECI CCNNGG 1 cut(s) 167
BssMI GATC 2 cut(s) 12, 54
BssNI GRCGYC 1 cut(s) 150
Bst2UI CCWGG 2 cut(s) 168, 252
Bst6I CTCTTC 2 cut(s) 84, 242
BstACI GRCGYC 1 cut(s) 150
BstAPI GCANNNNNTGC 1 cut(s) 214
BstBI TTCGAA 2 cut(s) 26, 108
BstDEI CTNAG 3 cut(s) 9, 37, 51
BstKTI GATC 2 cut(s) 15, 57
BstMAI GTCTC 1 cut(s) 111
BstMBI GATC 2 cut(s) 12, 54
BstMWI GCNNNNNNNGC 2 cut(s) 82, 214
BstNI CCWGG 2 cut(s) 168, 252
BstNSI RCATGY 1 cut(s) 280
BstSCI CCNGG 3 cut(s) 57, 166, 250
BstV1I GCAGC 1 cut(s) 69
BstX2I RGATCY 2 cut(s) 12, 54
BstYI RGATCY 2 cut(s) 12, 54
BsuRI GGCC 2 cut(s) 76, 166
Cfr13I GGNCC 2 cut(s) 143, 243
CseI GACGC 1 cut(s) 158
CviAII CATG 1 cut(s) 277
CviJI RGCY 7 cut(s) 36, 62, 76, 82, 158, 166, 172
CviKI_1 RGCY 7 cut(s) 36, 62, 76, 82, 158, 166, 172
DdeI CTNAG 3 cut(s) 9, 37, 51
DpnI GATC 2 cut(s) 14, 56
DpnII GATC 2 cut(s) 12, 54
DrdI GACNNNNNNGTC 1 cut(s) 125
DseDI GACNNNNNNGTC 1 cut(s) 125
Eam1104I CTCTTC 2 cut(s) 84, 242
EarI CTCTTC 2 cut(s) 84, 242
EciI GGCGGA 1 cut(s) 129
Ecl136II GAGCTC 1 cut(s) 36
Eco24I GRGCYC 1 cut(s) 38
Eco47I GGWCC 2 cut(s) 143, 243
Eco53kI GAGCTC 1 cut(s) 36
Eco57I CTGAAG 1 cut(s) 223
EcoICRI GAGCTC 1 cut(s) 36
EcoRII CCWGG 2 cut(s) 166, 250
EcoT38I GRGCYC 1 cut(s) 38
Esp3I CGTCTC 1 cut(s) 111
FaeI CATG 1 cut(s) 280
FaiI YATR 2 cut(s) 278, 311
FalI AAGNNNNNCTT 2 cut(s) 201, 233
FatI CATG 1 cut(s) 276
FblI GTMKAC 1 cut(s) 300
Fnu4HI GCNGC 1 cut(s) 83
FriOI GRGCYC 1 cut(s) 38
Fsp4HI GCNGC 1 cut(s) 83
FspBI CTAG 1 cut(s) 197
GluI GCNGC 1 cut(s) 83
HaeIII GGCC 2 cut(s) 76, 166
HapII CCGG 2 cut(s) 59, 153
HgaI GACGC 1 cut(s) 158
Hin1I GRCGYC 1 cut(s) 150
Hin1II CATG 1 cut(s) 280
HinfI GANTC 2 cut(s) 23, 28
HpaII CCGG 2 cut(s) 59, 153
Hpy166II GTNNAC 2 cut(s) 178, 301
Hpy188I TCNGA 4 cut(s) 12, 33, 40, 54
Hpy8I GTNNAC 2 cut(s) 178, 301
Hpy99I CGWCG 1 cut(s) 131
HpyAV CCTTC 3 cut(s) 104, 115, 252
HpyCH4V TGCA 4 cut(s) 4, 85, 229, 294
HpyF10VI GCNNNNNNNGC 2 cut(s) 82, 214
HpyF3I CTNAG 3 cut(s) 9, 37, 51
Hsp92I GRCGYC 1 cut(s) 150
Hsp92II CATG 1 cut(s) 280
Kzo9I GATC 2 cut(s) 12, 54
LmnI GCTCC 2 cut(s) 33, 155
LpnPI CCDG 8 cut(s) 72, 153, 159, 166, 180, 226, 237, 264
Lsp1109I GCAGC 1 cut(s) 69
LweI GCATC 1 cut(s) 204
MaeI CTAG 1 cut(s) 197
MaeIII GTNAC 1 cut(s) 100
MalI GATC 2 cut(s) 14, 56
MboI GATC 2 cut(s) 12, 54
MboII GAAGA 3 cut(s) 101, 202, 229
MflI RGATCY 2 cut(s) 12, 54
MhlI GDGCHC 1 cut(s) 38
MluCI AATT 1 cut(s) 230
MmeI TCCRAC 1 cut(s) 76
MnlI CCTC 2 cut(s) 66, 85
MseI TTAA 1 cut(s) 319
MspI CCGG 2 cut(s) 59, 153
MspR9I CCNGG 3 cut(s) 59, 168, 252
MvaI CCWGG 2 cut(s) 168, 252
MwoI GCNNNNNNNGC 2 cut(s) 82, 214
NciI CCSGG 1 cut(s) 59
NdeII GATC 2 cut(s) 12, 54
NlaIII CATG 1 cut(s) 280
NlaIV GGNNCC 1 cut(s) 157
NspI RCATGY 1 cut(s) 280
NspV TTCGAA 2 cut(s) 26, 108
PciI ACATGT 1 cut(s) 276
PcsI WCGNNNNNNNCGW 2 cut(s) 132, 156
PfeI GAWTC 2 cut(s) 23, 28
PflFI GACNNNGTC 1 cut(s) 122
PkrI GCNGC 1 cut(s) 84
PscI ACATGT 1 cut(s) 276
Psp124BI GAGCTC 1 cut(s) 38
Psp6I CCWGG 2 cut(s) 166, 250
PspGI CCWGG 2 cut(s) 166, 250
PspN4I GGNNCC 1 cut(s) 157
PspPI GGNCC 2 cut(s) 143, 243
PsuI RGATCY 2 cut(s) 12, 54
PsyI GACNNNGTC 1 cut(s) 122
SacI GAGCTC 1 cut(s) 38
SaqAI TTAA 1 cut(s) 319
SatI GCNGC 1 cut(s) 83
Sau3AI GATC 2 cut(s) 12, 54
Sau96I GGNCC 2 cut(s) 143, 243
ScrFI CCNGG 3 cut(s) 59, 168, 252
SduI GDGCHC 1 cut(s) 38
SetI ASST 7 cut(s) 38, 84, 96, 107, 148, 245, 253
SfaNI GCATC 1 cut(s) 204
SfuI TTCGAA 2 cut(s) 26, 108
SinI GGWCC 2 cut(s) 143, 243
Sse9I AATT 1 cut(s) 230
SsiI CCGC 1 cut(s) 114
SspMI CTAG 1 cut(s) 197
SstI GAGCTC 1 cut(s) 38
StyD4I CCNGG 3 cut(s) 57, 166, 250
TaqI TCGA 2 cut(s) 26, 108
TasI AATT 1 cut(s) 230
TfiI GAWTC 2 cut(s) 23, 28
Tru1I TTAA 1 cut(s) 319
Tru9I TTAA 1 cut(s) 319
TseI GCWGC 1 cut(s) 82
TspGWI ACGGA 1 cut(s) 35
Tth111I GACNNNGTC 1 cut(s) 122
VpaK11BI GGWCC 2 cut(s) 143, 243
XceI RCATGY 1 cut(s) 280
XmiI GTMKAC 1 cut(s) 300
XspI CTAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.