Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003024

Physical Location & Seq

Genomic Coordinates Reverse (-)

36188835 .. 36189227

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG308700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGATGAAATATGGAGCCTCAGCTTCAAGACCTCTCTTCTTCAACACCGAACCGGCCATTGTCAAGAGCAATGGTCTTAATAGCACTAGCGCTTCTAGTATCATCGATTGCAGCACAACAACAAGGAGGAGGCGCGTCGGTCTGGTTAGAGCCTCGTCGCCTACAAGACCCACAAGACCCACCTTGTCCAGCAATTGGGATTTTCATTTCGCCGCTACTACTACTACTTCAGTTCCACGCGTCCCCAGATTCAAAGAGCTCGATACCACCAACATGCTCCTCCGTCAGAGAATCATCTTCTTGGGTTCTCATGTTTCATTTTCATTTGAATTATTGAAATGGGTTTTGGAAAATCTTGTGAATTTTTGTACTCTCGTGTTTGTTGGAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009368 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009840 GO:0009941 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

130

Amino Acids

14.56

Weight (kDa)

11.11

Isoelectric Point (pI)

34.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66670
fragaria_vesca	FvH4_7g04110
malus_domestica	MD02G1275200.v1.1 MD07G1043100.v1.1
prunus_persica	Prupe.2G045800_v2.0.a1 Prupe.2G045800_v2.0.a1 Prupe.2G045800_v2.0.a1
pyrus_communis	pycom02g23530 pycom07g03020
rosa_chinensis	RchiOBHm_Chr1g0327981 RchiOBHm_Chr1g0372191
rosa_laevigata	RLG00000008647 RLG00000012938 RLG00000021509 RLG00000029950
rosa_multiflora	Rmu_sc0000064.1_g000027 Rmu_sc0000272.1_g000043 Rmu_sc0001755.1_g000019 Rmu_sc0003977.1_g000001 Rmu_sc0007782.1_g000018 Rmu_ssc0000309.1_g000031
rosa_roxburghii	Rroxscaffold_4G00322040
rosa_rugosa	Rorug01G0073100
rosa_samantha	Rh1AG089900 Rh1BG071800 Rh1BG342100 Rh1CG086900 Rh1DG093600 Rh2BG432000 Rh2CG303000 Rh6AG065100 Rh6AG270700 Rh6BG088100 Rh6DG224400 Rh7DG308700
rosa_wichuraiana	Rw0G022860 Rw1G006940 Rw1G006960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	195
AccII	CGCG	2 cut(s)	135, 240
AciI	CCGC	1 cut(s)	213
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	1 cut(s)	361
AcuI	CTGAAG	1 cut(s)	213
AfaI	GTAC	1 cut(s)	370
AfeI	AGCGCT	1 cut(s)	91
AfiI	CCNNNNNNNGG	1 cut(s)	195
AflIII	ACRYGT	1 cut(s)	238
AgsI	TTSAA	5 cut(s)	27, 43, 253, 329, 337
AjuI	GAANNNNNNNTTGG	2 cut(s)	329, 361
AluBI	AGCT	3 cut(s)	23, 259, 390
AluI	AGCT	3 cut(s)	23, 259, 390
Alw21I	GWGCWC	1 cut(s)	261
Aor51HI	AGCGCT	1 cut(s)	91
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	1 cut(s)	111
ApoI	RAATTY	1 cut(s)	361
AspLEI	GCGC	2 cut(s)	92, 135
BanII	GRGCYC	1 cut(s)	261
BauI	CACGAG	1 cut(s)	374
Bbv12I	GWGCWC	1 cut(s)	261
BbvCI	CCTCAGC	1 cut(s)	19
BbvI	GCAGC	1 cut(s)	123
BfaI	CTAG	2 cut(s)	87, 96
BfoI	RGCGCY	1 cut(s)	93
BisI	GCNGC	2 cut(s)	112, 213
BlsI	GCNGC	2 cut(s)	113, 214
BmiI	GGNNCC	1 cut(s)	16
Bpu10I	CCTNAGC	1 cut(s)	19
Bsa29I	ATCGAT	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	1 cut(s)	195
Bse118I	RCCGGY	1 cut(s)	52
Bse3DI	GCAATG	1 cut(s)	76
BseCI	ATCGAT	1 cut(s)	105
BseLI	CCNNNNNNNGG	1 cut(s)	195
BseMI	GCAATG	1 cut(s)	76
BseMII	CTCAG	1 cut(s)	33
BseRI	GAGGAG	2 cut(s)	142, 269
BseXI	GCAGC	1 cut(s)	123
Bsh1236I	CGCG	2 cut(s)	135, 240
BshFI	GGCC	1 cut(s)	56
BshVI	ATCGAT	1 cut(s)	105
BsiHKAI	GWGCWC	1 cut(s)	261
BsiSI	CCGG	1 cut(s)	53
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	1 cut(s)	195
BsmFI	GGGAC	1 cut(s)	227
BsnI	GGCC	1 cut(s)	56
Bsp1286I	GDGCHC	1 cut(s)	261
BspACI	CCGC	1 cut(s)	213
BspANI	GGCC	1 cut(s)	56
BspCNI	CTCAG	1 cut(s)	32
BspDI	ATCGAT	1 cut(s)	105
BspFNI	CGCG	2 cut(s)	135, 240
BspLI	GGNNCC	1 cut(s)	16
BsrDI	GCAATG	1 cut(s)	76
BsrFI	RCCGGY	1 cut(s)	52
BssAI	RCCGGY	1 cut(s)	52
BssSI	CACGAG	1 cut(s)	374
Bst2BI	CACGAG	1 cut(s)	374
Bst6I	CTCTTC	1 cut(s)	41
BstDEI	CTNAG	1 cut(s)	19
BstFNI	CGCG	2 cut(s)	135, 240
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	2 cut(s)	92, 135
BstNSI	RCATGY	1 cut(s)	277
BstUI	CGCG	2 cut(s)	135, 240
BstV1I	GCAGC	1 cut(s)	123
Bsu15I	ATCGAT	1 cut(s)	105
BsuRI	GGCC	1 cut(s)	56
BsuTUI	ATCGAT	1 cut(s)	105
CfoI	GCGC	2 cut(s)	92, 135
Cfr10I	RCCGGY	1 cut(s)	52
ClaI	ATCGAT	1 cut(s)	105
CseI	GACGC	2 cut(s)	124, 229
Csp6I	GTAC	1 cut(s)	369
CviAII	CATG	2 cut(s)	274, 311
CviJI	RGCY	6 cut(s)	17, 23, 56, 152, 259, 390
CviKI_1	RGCY	6 cut(s)	17, 23, 56, 152, 259, 390
CviQI	GTAC	1 cut(s)	369
DdeI	CTNAG	1 cut(s)	19
EaeI	YGGCCR	1 cut(s)	54
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
Ecl136II	GAGCTC	1 cut(s)	259
Eco24I	GRGCYC	1 cut(s)	261
Eco47III	AGCGCT	1 cut(s)	91
Eco53kI	GAGCTC	1 cut(s)	259
Eco57I	CTGAAG	1 cut(s)	213
EcoICRI	GAGCTC	1 cut(s)	259
EcoT38I	GRGCYC	1 cut(s)	261
FaeI	CATG	2 cut(s)	277, 314
FaiI	YATR	3 cut(s)	12, 275, 312
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	2 cut(s)	273, 310
Fnu4HI	GCNGC	2 cut(s)	112, 213
FriOI	GRGCYC	1 cut(s)	261
Fsp4HI	GCNGC	2 cut(s)	112, 213
FspBI	CTAG	2 cut(s)	87, 96
GlaI	GCGC	2 cut(s)	91, 134
GluI	GCNGC	2 cut(s)	112, 213
HaeII	RGCGCY	1 cut(s)	93
HaeIII	GGCC	1 cut(s)	56
HapII	CCGG	1 cut(s)	53
HgaI	GACGC	2 cut(s)	124, 229
HhaI	GCGC	2 cut(s)	92, 135
Hin1II	CATG	2 cut(s)	277, 314
Hin6I	GCGC	2 cut(s)	90, 133
HinP1I	GCGC	2 cut(s)	90, 133
HinfI	GANTC	2 cut(s)	249, 291
HpaII	CCGG	1 cut(s)	53
Hpy188I	TCNGA	1 cut(s)	288
Hpy188III	TCNNGA	2 cut(s)	27, 64
Hpy99I	CGWCG	2 cut(s)	140, 160
HpyCH4V	TGCA	1 cut(s)	111
HpyF3I	CTNAG	1 cut(s)	19
Hsp92II	CATG	2 cut(s)	277, 314
HspAI	GCGC	2 cut(s)	90, 133
LmnI	GCTCC	2 cut(s)	14, 282
LpnPI	CCDG	4 cut(s)	66, 128, 202, 259
Lsp1109I	GCAGC	1 cut(s)	123
MaeI	CTAG	2 cut(s)	87, 96
MboII	GAAGA	3 cut(s)	28, 31, 289
MfeI	CAATTG	1 cut(s)	193
MhlI	GDGCHC	1 cut(s)	261
MluCI	AATT	3 cut(s)	193, 329, 361
MluI	ACGCGT	1 cut(s)	238
MmeI	TCCRAC	1 cut(s)	364
MnlI	CCTC	6 cut(s)	28, 42, 120, 123, 163, 290
MseI	TTAA	1 cut(s)	78
MslI	CAYNNNNRTG	1 cut(s)	272
MspI	CCGG	1 cut(s)	53
MunI	CAATTG	1 cut(s)	193
MvnI	CGCG	2 cut(s)	135, 240
NlaIII	CATG	2 cut(s)	277, 314
NlaIV	GGNNCC	1 cut(s)	16
NspI	RCATGY	1 cut(s)	277
PfeI	GAWTC	2 cut(s)	249, 291
PflMI	CCANNNNNTGG	1 cut(s)	195
PkrI	GCNGC	2 cut(s)	113, 214
Psp124BI	GAGCTC	1 cut(s)	261
PspN4I	GGNNCC	1 cut(s)	16
RsaI	GTAC	1 cut(s)	370
RsaNI	GTAC	1 cut(s)	369
RseI	CAYNNNNRTG	1 cut(s)	272
SacI	GAGCTC	1 cut(s)	261
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	2 cut(s)	112, 213
SduI	GDGCHC	1 cut(s)	261
SetI	ASST	5 cut(s)	25, 34, 185, 261, 392
SmiMI	CAYNNNNRTG	1 cut(s)	272
Sse9I	AATT	3 cut(s)	193, 329, 361
SsiI	CCGC	1 cut(s)	213
SspMI	CTAG	2 cut(s)	87, 96
SstI	GAGCTC	1 cut(s)	261
TaqI	TCGA	2 cut(s)	105, 261
TaqII	GACCGA	1 cut(s)	128
TasI	AATT	3 cut(s)	193, 329, 361
TatI	WGTACW	1 cut(s)	368
TauI	GCSGC	1 cut(s)	215
TfiI	GAWTC	2 cut(s)	249, 291
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TseI	GCWGC	1 cut(s)	111
TspDTI	ATGAA	4 cut(s)	20, 194, 306, 312
TspGWI	ACGGA	1 cut(s)	272
Van91I	CCANNNNNTGG	1 cut(s)	195
XapI	RAATTY	1 cut(s)	361
XceI	RCATGY	1 cut(s)	277
XspI	CTAG	2 cut(s)	87, 96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.