Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003977.1

Orthogroup ID

OG0003024

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 3887

Gene Structure 3887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003977.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atgatgacatacgcagcctcagcttcaaggcctctctgtttcaacacccaaccggccattgtgaacagaaacggtcttaatagcagtagcgcttctagtatcatcgattgcagcagaacaacaaggaggaagcgcgtcggcctagttcaagcctcgtcgcctacaagacccaccttgtccagcaattgggattttcagttcgcagctactactactactacttcctctccacgcgtccccagattcgaagagctcgacaccaccaacatgctcctccgtcagcgactcatcttcttgggttctcaggtggatgatatgacggcggatttgataataagccagctgctatttctggatgctgaagaccccaaaaaggacattacattgtttatcaattcgcctggtggctcggttactgctggaatgggaatatatgatgcaatgaaattgtgcaaggcagatgtttcaactgtttgcttggggcttgctgcttctatgggtgcatttctccttgcttccggttcaaaaggaaagaggtactgcatgcccaatgcaagagtgatgatccatcaacctcttggaactgctggaggcaaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009368 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009840 GO:0009941 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

199

Amino Acids

21.37

Weight (kDa)

9.43

Isoelectric Point (pI)

40.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66670
fragaria_vesca	FvH4_7g04110
malus_domestica	MD02G1275200.v1.1 MD07G1043100.v1.1
prunus_persica	Prupe.2G045800_v2.0.a1 Prupe.2G045800_v2.0.a1 Prupe.2G045800_v2.0.a1
pyrus_communis	pycom02g23530 pycom07g03020
rosa_chinensis	RchiOBHm_Chr1g0327981 RchiOBHm_Chr1g0372191
rosa_laevigata	RLG00000008647 RLG00000012938 RLG00000021509 RLG00000029950
rosa_multiflora	Rmu_sc0000064.1_g000027 Rmu_sc0000272.1_g000043 Rmu_sc0001755.1_g000019 Rmu_sc0003977.1_g000001 Rmu_sc0007782.1_g000018 Rmu_ssc0000309.1_g000031
rosa_roxburghii	Rroxscaffold_4G00322040
rosa_rugosa	Rorug01G0073100
rosa_samantha	Rh1AG089900 Rh1BG071800 Rh1BG342100 Rh1CG086900 Rh1DG093600 Rh2BG432000 Rh2CG303000 Rh6AG065100 Rh6AG270700 Rh6BG088100 Rh6DG224400 Rh7DG308700
rosa_wichuraiana	Rw0G022860 Rw1G006940 Rw1G006960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	186
AccII	CGCG	2 cut(s)	135, 234
AciI	CCGC	1 cut(s)	323
AclWI	GGATC	1 cut(s)	559
AcoI	YGGCCR	1 cut(s)	54
AcuI	CTGAAG	1 cut(s)	381
AfaI	GTAC	1 cut(s)	539
AfeI	AGCGCT	1 cut(s)	91
AfiI	CCNNNNNNNGG	2 cut(s)	186, 373
AflIII	ACRYGT	1 cut(s)	232
AgsI	TTSAA	5 cut(s)	27, 43, 149, 468, 525
AjnI	CCWGG	1 cut(s)	400
AloI	GAACNNNNNNTCC	2 cut(s)	182, 214
AluBI	AGCT	4 cut(s)	23, 206, 253, 343
AluI	AGCT	4 cut(s)	23, 206, 253, 343
Alw21I	GWGCWC	1 cut(s)	255
AlwI	GGATC	1 cut(s)	559
Aor51HI	AGCGCT	1 cut(s)	91
AoxI	GGCC	3 cut(s)	29, 54, 139
ApeKI	GCWGC	5 cut(s)	14, 111, 203, 343, 488
ArsI	GACNNNNNNTTYG	2 cut(s)	310, 342
AspLEI	GCGC	2 cut(s)	92, 135
AsuII	TTCGAA	1 cut(s)	246
BanII	GRGCYC	1 cut(s)	255
BbsI	GAAGAC	1 cut(s)	369
Bbv12I	GWGCWC	1 cut(s)	255
BbvCI	CCTCAGC	1 cut(s)	19
BbvI	GCAGC	5 cut(s)	26, 123, 215, 330, 475
BccI	CCATC	1 cut(s)	576
BceAI	ACGGC	1 cut(s)	336
BciT130I	CCWGG	1 cut(s)	402
BfaI	CTAG	2 cut(s)	96, 143
BfoI	RGCGCY	1 cut(s)	93
BisI	GCNGC	5 cut(s)	15, 112, 204, 344, 489
BlsI	GCNGC	5 cut(s)	16, 113, 205, 345, 490
Bme1390I	CCNGG	1 cut(s)	402
BmrFI	CCNGG	1 cut(s)	402
BmsI	GCATC	2 cut(s)	346, 427
BpiI	GAAGAC	1 cut(s)	369
Bpu10I	CCTNAGC	1 cut(s)	19
Bpu14I	TTCGAA	1 cut(s)	246
Bsa29I	ATCGAT	1 cut(s)	105
BsaWI	WCCGGW	1 cut(s)	518
BsaXI	ACNNNNNCTCC	2 cut(s)	211, 241
Bsc4I	CCNNNNNNNGG	2 cut(s)	186, 373
Bse118I	RCCGGY	1 cut(s)	52
Bse3DI	GCAATG	1 cut(s)	447
BseBI	CCWGG	1 cut(s)	402
BseCI	ATCGAT	1 cut(s)	105
BseGI	GGATG	2 cut(s)	316, 361
BseLI	CCNNNNNNNGG	2 cut(s)	186, 373
BseMI	GCAATG	1 cut(s)	447
BseMII	CTCAG	2 cut(s)	33, 317
BseRI	GAGGAG	1 cut(s)	263
BseXI	GCAGC	5 cut(s)	26, 123, 215, 330, 475
Bsh1236I	CGCG	2 cut(s)	135, 234
BshFI	GGCC	3 cut(s)	31, 56, 141
BshVI	ATCGAT	1 cut(s)	105
BsiHKAI	GWGCWC	1 cut(s)	255
BsiSI	CCGG	2 cut(s)	53, 519
BslFI	GGGAC	1 cut(s)	221
BslI	CCNNNNNNNGG	2 cut(s)	186, 373
BsmFI	GGGAC	1 cut(s)	221
BsnI	GGCC	3 cut(s)	31, 56, 141
Bsp119I	TTCGAA	1 cut(s)	246
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp143I	GATC	1 cut(s)	564
BspACI	CCGC	1 cut(s)	323
BspANI	GGCC	3 cut(s)	31, 56, 141
BspCNI	CTCAG	2 cut(s)	32, 316
BspDI	ATCGAT	1 cut(s)	105
BspFNI	CGCG	2 cut(s)	135, 234
BspPI	GGATC	1 cut(s)	559
BspQI	GCTCTTC	1 cut(s)	243
BspT104I	TTCGAA	1 cut(s)	246
BsrDI	GCAATG	1 cut(s)	447
BsrFI	RCCGGY	1 cut(s)	52
BssAI	RCCGGY	1 cut(s)	52
BssMI	GATC	1 cut(s)	564
Bst2UI	CCWGG	1 cut(s)	402
Bst4CI	ACNGT	2 cut(s)	74, 472
Bst6I	CTCTTC	1 cut(s)	243
BstBI	TTCGAA	1 cut(s)	246
BstC8I	GCNNGC	3 cut(s)	341, 486, 545
BstDEI	CTNAG	2 cut(s)	19, 303
BstF5I	GGATG	2 cut(s)	316, 361
BstFNI	CGCG	2 cut(s)	135, 234
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	2 cut(s)	92, 135
BstKTI	GATC	1 cut(s)	567
BstMBI	GATC	1 cut(s)	564
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BstNI	CCWGG	1 cut(s)	402
BstNSI	RCATGY	2 cut(s)	271, 547
BstSCI	CCNGG	1 cut(s)	400
BstUI	CGCG	2 cut(s)	135, 234
BstV1I	GCAGC	5 cut(s)	26, 123, 215, 330, 475
BstV2I	GAAGAC	1 cut(s)	369
Bsu15I	ATCGAT	1 cut(s)	105
BsuRI	GGCC	3 cut(s)	31, 56, 141
BsuTUI	ATCGAT	1 cut(s)	105
BtsCI	GGATG	2 cut(s)	316, 361
Cac8I	GCNNGC	3 cut(s)	341, 486, 545
CfoI	GCGC	2 cut(s)	92, 135
Cfr10I	RCCGGY	1 cut(s)	52
ClaI	ATCGAT	1 cut(s)	105
CseI	GACGC	2 cut(s)	124, 223
Csp6I	GTAC	1 cut(s)	538
CviAII	CATG	2 cut(s)	268, 544
CviQI	GTAC	1 cut(s)	538
DdeI	CTNAG	2 cut(s)	19, 303
DpnI	GATC	1 cut(s)	566
DpnII	GATC	1 cut(s)	564
EaeI	YGGCCR	1 cut(s)	54
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
EciI	GGCGGA	1 cut(s)	338
Ecl136II	GAGCTC	1 cut(s)	253
Eco147I	AGGCCT	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	255
Eco47III	AGCGCT	1 cut(s)	91
Eco53kI	GAGCTC	1 cut(s)	253
Eco57I	CTGAAG	1 cut(s)	381
EcoICRI	GAGCTC	1 cut(s)	253
EcoRII	CCWGG	1 cut(s)	400
EcoT38I	GRGCYC	1 cut(s)	255
FaeI	CATG	2 cut(s)	271, 547
FaiI	YATR	7 cut(s)	10, 269, 317, 433, 435, 497, 545
FaqI	GGGAC	1 cut(s)	221
FatI	CATG	2 cut(s)	267, 543
Fnu4HI	GCNGC	5 cut(s)	15, 112, 204, 344, 489
FokI	GGATG	2 cut(s)	323, 368
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	5 cut(s)	15, 112, 204, 344, 489
FspBI	CTAG	2 cut(s)	96, 143
GlaI	GCGC	2 cut(s)	91, 134
GluI	GCNGC	5 cut(s)	15, 112, 204, 344, 489
HaeII	RGCGCY	1 cut(s)	93
HaeIII	GGCC	3 cut(s)	31, 56, 141
HapII	CCGG	2 cut(s)	53, 519
HgaI	GACGC	2 cut(s)	124, 223
HhaI	GCGC	2 cut(s)	92, 135
Hin1II	CATG	2 cut(s)	271, 547
Hin6I	GCGC	2 cut(s)	90, 133
HinP1I	GCGC	2 cut(s)	90, 133
HinfI	GANTC	2 cut(s)	243, 285
HpaII	CCGG	2 cut(s)	53, 519
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188III	TCNNGA	1 cut(s)	353
Hpy8I	GTNNAC	1 cut(s)	64
Hpy99I	CGWCG	2 cut(s)	140, 160
HpyCH4III	ACNGT	2 cut(s)	74, 472
HpyCH4V	TGCA	6 cut(s)	111, 440, 453, 503, 543, 554
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
HpyF3I	CTNAG	2 cut(s)	19, 303
Hsp92II	CATG	2 cut(s)	271, 547
HspAI	GCGC	2 cut(s)	90, 133
Kzo9I	GATC	1 cut(s)	564
LguI	GCTCTTC	1 cut(s)	243
LmnI	GCTCC	1 cut(s)	276
Lsp1109I	GCAGC	5 cut(s)	26, 123, 215, 330, 475
LweI	GCATC	2 cut(s)	346, 427
MaeI	CTAG	2 cut(s)	96, 143
MaeIII	GTNAC	1 cut(s)	412
MalI	GATC	1 cut(s)	566
MboI	GATC	1 cut(s)	564
MboII	GAAGA	3 cut(s)	260, 283, 374
MfeI	CAATTG	1 cut(s)	184
MhlI	GDGCHC	1 cut(s)	255
MluCI	AATT	3 cut(s)	184, 394, 446
MluI	ACGCGT	1 cut(s)	232
MlyI	GAGTC	1 cut(s)	279
MnlI	CCTC	9 cut(s)	28, 42, 120, 163, 235, 284, 528, 584, 585
MseI	TTAA	1 cut(s)	78
MslI	CAYNNNNRTG	1 cut(s)	266
MspA1I	CMGCKG	1 cut(s)	343
MspI	CCGG	2 cut(s)	53, 519
MspR9I	CCNGG	1 cut(s)	402
MunI	CAATTG	1 cut(s)	184
MvaI	CCWGG	1 cut(s)	402
MvnI	CGCG	2 cut(s)	135, 234
MwoI	GCNNNNNNNGC	1 cut(s)	20
NdeII	GATC	1 cut(s)	564
NlaIII	CATG	2 cut(s)	271, 547
NspI	RCATGY	2 cut(s)	271, 547
NspV	TTCGAA	1 cut(s)	246
PaeI	GCATGC	1 cut(s)	547
PceI	AGGCCT	1 cut(s)	31
PciSI	GCTCTTC	1 cut(s)	243
PcsI	WCGNNNNNNNCGW	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	243
PflMI	CCANNNNNTGG	1 cut(s)	186
PkrI	GCNGC	5 cut(s)	16, 113, 205, 345, 490
PleI	GAGTC	1 cut(s)	279
PpsI	GAGTC	1 cut(s)	279
Psp124BI	GAGCTC	1 cut(s)	255
Psp6I	CCWGG	1 cut(s)	400
PspGI	CCWGG	1 cut(s)	400
PvuII	CAGCTG	1 cut(s)	343
RsaI	GTAC	1 cut(s)	539
RsaNI	GTAC	1 cut(s)	538
RseI	CAYNNNNRTG	1 cut(s)	266
SacI	GAGCTC	1 cut(s)	255
SapI	GCTCTTC	1 cut(s)	243
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	5 cut(s)	15, 112, 204, 344, 489
Sau3AI	GATC	1 cut(s)	564
SchI	GAGTC	1 cut(s)	279
ScrFI	CCNGG	1 cut(s)	402
SduI	GDGCHC	1 cut(s)	255
SetI	ASST	8 cut(s)	25, 176, 208, 255, 309, 345, 539, 577
SfaNI	GCATC	2 cut(s)	346, 427
SfuI	TTCGAA	1 cut(s)	246
SmiMI	CAYNNNNRTG	1 cut(s)	266
SphI	GCATGC	1 cut(s)	547
Sse9I	AATT	3 cut(s)	184, 394, 446
SseBI	AGGCCT	1 cut(s)	31
SsiI	CCGC	1 cut(s)	323
SspMI	CTAG	2 cut(s)	96, 143
SstI	GAGCTC	1 cut(s)	255
StuI	AGGCCT	1 cut(s)	31
StyD4I	CCNGG	1 cut(s)	400
TaaI	ACNGT	2 cut(s)	74, 472
TaqI	TCGA	3 cut(s)	105, 246, 255
TasI	AATT	3 cut(s)	184, 394, 446
TfiI	GAWTC	1 cut(s)	243
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TseI	GCWGC	5 cut(s)	14, 111, 203, 343, 488
TspDTI	ATGAA	1 cut(s)	458
TspGWI	ACGGA	1 cut(s)	266
Van91I	CCANNNNNTGG	1 cut(s)	186
XceI	RCATGY	2 cut(s)	271, 547
XcmI	CCANNNNNNNNNTGG	1 cut(s)	575
XspI	CTAG	2 cut(s)	96, 143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.