Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000064.1

Orthogroup ID

OG0003024

Physical Location & Seq

Genomic Coordinates Forward (+)

160897 .. 161280

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000064.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atgatgacatatggagcctcagcttcaaggcctctctgcttcaacacccaaccggccattgtcaagagcaatggtcttaatagcactagcgcttctagtatcatcgattgcagcacaacaacaaggaggaggcgcgtcggtctggttagagcctcgtcacctacaagactcaccttgtccagcaattgggattttcatttcaccactactactactacttcagttccacgcgtccccagattcaaagagctcgataccaccaacatgctcctccatcagaattccatcttcttgggttctcatgtttcattttcatttgaaatattgaaatgggttttggaaaatcttgtgaatttttgtactcttgtgtttgttagaagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009368 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009840 GO:0009941 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

127

Amino Acids

14.22

Weight (kDa)

10.4

Isoelectric Point (pI)

34.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66670
fragaria_vesca	FvH4_7g04110
malus_domestica	MD02G1275200.v1.1 MD07G1043100.v1.1
prunus_persica	Prupe.2G045800_v2.0.a1 Prupe.2G045800_v2.0.a1 Prupe.2G045800_v2.0.a1
pyrus_communis	pycom02g23530 pycom07g03020
rosa_chinensis	RchiOBHm_Chr1g0327981 RchiOBHm_Chr1g0372191
rosa_laevigata	RLG00000008647 RLG00000012938 RLG00000021509 RLG00000029950
rosa_multiflora	Rmu_sc0000064.1_g000027 Rmu_sc0000272.1_g000043 Rmu_sc0001755.1_g000019 Rmu_sc0003977.1_g000001 Rmu_sc0007782.1_g000018 Rmu_ssc0000309.1_g000031
rosa_roxburghii	Rroxscaffold_4G00322040
rosa_rugosa	Rorug01G0073100
rosa_samantha	Rh1AG089900 Rh1BG071800 Rh1BG342100 Rh1CG086900 Rh1DG093600 Rh2BG432000 Rh2CG303000 Rh6AG065100 Rh6AG270700 Rh6BG088100 Rh6DG224400 Rh7DG308700
rosa_wichuraiana	Rw0G022860 Rw1G006940 Rw1G006960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	186
AccII	CGCG	2 cut(s)	135, 231
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	2 cut(s)	280, 352
AcuI	CTGAAG	1 cut(s)	204
AfaI	GTAC	1 cut(s)	361
AfeI	AGCGCT	1 cut(s)	91
AfiI	CCNNNNNNNGG	1 cut(s)	186
AflIII	ACRYGT	1 cut(s)	229
AgsI	TTSAA	5 cut(s)	27, 43, 244, 320, 328
AjuI	GAANNNNNNNTTGG	2 cut(s)	320, 352
AluBI	AGCT	3 cut(s)	23, 250, 381
AluI	AGCT	3 cut(s)	23, 250, 381
Alw21I	GWGCWC	1 cut(s)	252
Aor51HI	AGCGCT	1 cut(s)	91
AoxI	GGCC	2 cut(s)	29, 54
ApeKI	GCWGC	1 cut(s)	111
ApoI	RAATTY	2 cut(s)	280, 352
AspLEI	GCGC	2 cut(s)	92, 135
AsuHPI	GGTGA	3 cut(s)	150, 163, 193
BanII	GRGCYC	1 cut(s)	252
Bbv12I	GWGCWC	1 cut(s)	252
BbvCI	CCTCAGC	1 cut(s)	19
BbvI	GCAGC	1 cut(s)	123
BccI	CCATC	2 cut(s)	282, 293
BfaI	CTAG	2 cut(s)	87, 96
BfoI	RGCGCY	1 cut(s)	93
BisI	GCNGC	1 cut(s)	112
BlsI	GCNGC	1 cut(s)	113
BmiI	GGNNCC	1 cut(s)	16
Bpu10I	CCTNAGC	1 cut(s)	19
Bsa29I	ATCGAT	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse118I	RCCGGY	1 cut(s)	52
Bse3DI	GCAATG	1 cut(s)	76
BseCI	ATCGAT	1 cut(s)	105
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseMI	GCAATG	1 cut(s)	76
BseMII	CTCAG	1 cut(s)	33
BseRI	GAGGAG	2 cut(s)	142, 260
BseXI	GCAGC	1 cut(s)	123
Bsh1236I	CGCG	2 cut(s)	135, 231
BshFI	GGCC	2 cut(s)	31, 56
BshVI	ATCGAT	1 cut(s)	105
BsiHKAI	GWGCWC	1 cut(s)	252
BsiSI	CCGG	1 cut(s)	53
BslFI	GGGAC	1 cut(s)	218
BslI	CCNNNNNNNGG	1 cut(s)	186
BsmFI	GGGAC	1 cut(s)	218
BsnI	GGCC	2 cut(s)	31, 56
Bsp1286I	GDGCHC	1 cut(s)	252
BspANI	GGCC	2 cut(s)	31, 56
BspCNI	CTCAG	1 cut(s)	32
BspDI	ATCGAT	1 cut(s)	105
BspFNI	CGCG	2 cut(s)	135, 231
BspLI	GGNNCC	1 cut(s)	16
BsrDI	GCAATG	1 cut(s)	76
BsrFI	RCCGGY	1 cut(s)	52
BssAI	RCCGGY	1 cut(s)	52
BstDEI	CTNAG	1 cut(s)	19
BstFNI	CGCG	2 cut(s)	135, 231
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	2 cut(s)	92, 135
BstNSI	RCATGY	1 cut(s)	268
BstUI	CGCG	2 cut(s)	135, 231
BstV1I	GCAGC	1 cut(s)	123
BstXI	CCANNNNNNTGG	1 cut(s)	292
Bsu15I	ATCGAT	1 cut(s)	105
BsuRI	GGCC	2 cut(s)	31, 56
BsuTUI	ATCGAT	1 cut(s)	105
CfoI	GCGC	2 cut(s)	92, 135
Cfr10I	RCCGGY	1 cut(s)	52
ClaI	ATCGAT	1 cut(s)	105
CseI	GACGC	2 cut(s)	124, 220
Csp6I	GTAC	1 cut(s)	360
CviAII	CATG	2 cut(s)	265, 302
CviJI	RGCY	7 cut(s)	17, 23, 31, 56, 152, 250, 381
CviKI_1	RGCY	7 cut(s)	17, 23, 31, 56, 152, 250, 381
CviQI	GTAC	1 cut(s)	360
DdeI	CTNAG	1 cut(s)	19
EaeI	YGGCCR	1 cut(s)	54
Ecl136II	GAGCTC	1 cut(s)	250
Eco147I	AGGCCT	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	252
Eco47III	AGCGCT	1 cut(s)	91
Eco53kI	GAGCTC	1 cut(s)	250
Eco57I	CTGAAG	1 cut(s)	204
EcoICRI	GAGCTC	1 cut(s)	250
EcoRI	GAATTC	1 cut(s)	280
EcoT38I	GRGCYC	1 cut(s)	252
FaeI	CATG	2 cut(s)	268, 305
FaiI	YATR	4 cut(s)	10, 12, 266, 303
FaqI	GGGAC	1 cut(s)	218
FatI	CATG	2 cut(s)	264, 301
FauNDI	CATATG	1 cut(s)	10
Fnu4HI	GCNGC	1 cut(s)	112
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	1 cut(s)	112
FspBI	CTAG	2 cut(s)	87, 96
GlaI	GCGC	2 cut(s)	91, 134
GluI	GCNGC	1 cut(s)	112
HaeII	RGCGCY	1 cut(s)	93
HaeIII	GGCC	2 cut(s)	31, 56
HapII	CCGG	1 cut(s)	53
HgaI	GACGC	2 cut(s)	124, 220
HhaI	GCGC	2 cut(s)	92, 135
Hin1II	CATG	2 cut(s)	268, 305
Hin6I	GCGC	2 cut(s)	90, 133
HinP1I	GCGC	2 cut(s)	90, 133
HinfI	GANTC	2 cut(s)	168, 240
HpaII	CCGG	1 cut(s)	53
HphI	GGTGA	3 cut(s)	150, 163, 193
Hpy188I	TCNGA	1 cut(s)	279
Hpy188III	TCNNGA	1 cut(s)	64
Hpy99I	CGWCG	1 cut(s)	140
HpyCH4V	TGCA	1 cut(s)	111
HpyF3I	CTNAG	1 cut(s)	19
Hsp92II	CATG	2 cut(s)	268, 305
HspAI	GCGC	2 cut(s)	90, 133
LmnI	GCTCC	2 cut(s)	14, 273
LpnPI	CCDG	4 cut(s)	66, 128, 193, 250
Lsp1109I	GCAGC	1 cut(s)	123
MaeI	CTAG	2 cut(s)	87, 96
MaeIII	GTNAC	1 cut(s)	156
MboII	GAAGA	1 cut(s)	280
MfeI	CAATTG	1 cut(s)	184
MhlI	GDGCHC	1 cut(s)	252
MluCI	AATT	3 cut(s)	184, 280, 352
MluI	ACGCGT	1 cut(s)	229
MlyI	GAGTC	1 cut(s)	162
MnlI	CCTC	6 cut(s)	28, 42, 120, 123, 163, 281
MseI	TTAA	1 cut(s)	78
MslI	CAYNNNNRTG	1 cut(s)	263
MspI	CCGG	1 cut(s)	53
MunI	CAATTG	1 cut(s)	184
MvnI	CGCG	2 cut(s)	135, 231
NdeI	CATATG	1 cut(s)	10
NlaIII	CATG	2 cut(s)	268, 305
NlaIV	GGNNCC	1 cut(s)	16
NmuCI	GTSAC	1 cut(s)	156
NspI	RCATGY	1 cut(s)	268
PceI	AGGCCT	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	240
PflMI	CCANNNNNTGG	1 cut(s)	186
PkrI	GCNGC	1 cut(s)	113
PleI	GAGTC	1 cut(s)	162
PpsI	GAGTC	1 cut(s)	162
Psp124BI	GAGCTC	1 cut(s)	252
PspN4I	GGNNCC	1 cut(s)	16
RsaI	GTAC	1 cut(s)	361
RsaNI	GTAC	1 cut(s)	360
RseI	CAYNNNNRTG	1 cut(s)	263
SacI	GAGCTC	1 cut(s)	252
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	1 cut(s)	112
SchI	GAGTC	1 cut(s)	162
SduI	GDGCHC	1 cut(s)	252
SetI	ASST	5 cut(s)	25, 163, 176, 252, 383
SmiMI	CAYNNNNRTG	1 cut(s)	263
Sse9I	AATT	3 cut(s)	184, 280, 352
SseBI	AGGCCT	1 cut(s)	31
SspI	AATATT	1 cut(s)	324
SspMI	CTAG	2 cut(s)	87, 96
SstI	GAGCTC	1 cut(s)	252
StuI	AGGCCT	1 cut(s)	31
TaqI	TCGA	2 cut(s)	105, 252
TaqII	GACCGA	1 cut(s)	128
TasI	AATT	3 cut(s)	184, 280, 352
TatI	WGTACW	1 cut(s)	359
TfiI	GAWTC	1 cut(s)	240
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TseFI	GTSAC	1 cut(s)	156
TseI	GCWGC	1 cut(s)	111
Tsp45I	GTSAC	1 cut(s)	156
TspDTI	ATGAA	3 cut(s)	185, 297, 303
Van91I	CCANNNNNTGG	1 cut(s)	186
XapI	RAATTY	2 cut(s)	280, 352
XceI	RCATGY	1 cut(s)	268
XspI	CTAG	2 cut(s)	87, 96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.