Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007782.1

Orthogroup ID

OG0003024

Physical Location & Seq

Genomic Coordinates Forward (+)

86333 .. 86749

Gene Structure 417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007782.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atgatgacatatggagcctcagcttcaaggcctctctgcttcaacacccaaccggccattgtcaagagcaatggtcttaatagcactagcgcttctagaaggaggaggcgcgtcggtctggttagagcctcgtcgcctacaagactcacaagacccaccttgtccagcaattgggattttcatttcgccactactactactacttcagttccacgcgtccccagattcaaagagctcgataccaccaacatgctcctccatgagagcatcatcttgggttctcatgtttcattttcatttgaattattgaaatgggttttggaaaatcttgtgaatttttgtactctcgtgtttgttggaagcttaattgaattgttagaatatggaatttgtgggttttgtttcattgagttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009368 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009840 GO:0009941 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

138

Amino Acids

15.53

Weight (kDa)

9.43

Isoelectric Point (pI)

39.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66670
fragaria_vesca	FvH4_7g04110
malus_domestica	MD02G1275200.v1.1 MD07G1043100.v1.1
prunus_persica	Prupe.2G045800_v2.0.a1 Prupe.2G045800_v2.0.a1 Prupe.2G045800_v2.0.a1
pyrus_communis	pycom02g23530 pycom07g03020
rosa_chinensis	RchiOBHm_Chr1g0327981 RchiOBHm_Chr1g0372191
rosa_laevigata	RLG00000008647 RLG00000012938 RLG00000021509 RLG00000029950
rosa_multiflora	Rmu_sc0000064.1_g000027 Rmu_sc0000272.1_g000043 Rmu_sc0001755.1_g000019 Rmu_sc0003977.1_g000001 Rmu_sc0007782.1_g000018 Rmu_ssc0000309.1_g000031
rosa_roxburghii	Rroxscaffold_4G00322040
rosa_rugosa	Rorug01G0073100
rosa_samantha	Rh1AG089900 Rh1BG071800 Rh1BG342100 Rh1CG086900 Rh1DG093600 Rh2BG432000 Rh2CG303000 Rh6AG065100 Rh6AG270700 Rh6BG088100 Rh6DG224400 Rh7DG308700
rosa_wichuraiana	Rw0G022860 Rw1G006940 Rw1G006960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	171
AccII	CGCG	2 cut(s)	111, 216
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	2 cut(s)	334, 387
AcuI	CTGAAG	1 cut(s)	189
AfaI	GTAC	1 cut(s)	343
AfeI	AGCGCT	1 cut(s)	91
AfiI	CCNNNNNNNGG	1 cut(s)	171
AflIII	ACRYGT	1 cut(s)	214
AgsI	TTSAA	6 cut(s)	27, 43, 229, 302, 310, 371
AjuI	GAANNNNNNNTTGG	2 cut(s)	302, 334
AluBI	AGCT	3 cut(s)	23, 235, 363
AluI	AGCT	3 cut(s)	23, 235, 363
Alw21I	GWGCWC	1 cut(s)	237
Aor51HI	AGCGCT	1 cut(s)	91
AoxI	GGCC	2 cut(s)	29, 54
ApoI	RAATTY	2 cut(s)	334, 387
AspLEI	GCGC	2 cut(s)	92, 111
BanII	GRGCYC	1 cut(s)	237
BauI	CACGAG	1 cut(s)	347
Bbv12I	GWGCWC	1 cut(s)	237
BbvCI	CCTCAGC	1 cut(s)	19
BfaI	CTAG	2 cut(s)	87, 96
BfoI	RGCGCY	1 cut(s)	93
BmiI	GGNNCC	1 cut(s)	16
BmsI	GCATC	1 cut(s)	276
Bpu10I	CCTNAGC	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	1 cut(s)	171
Bse118I	RCCGGY	1 cut(s)	52
Bse3DI	GCAATG	1 cut(s)	76
BseLI	CCNNNNNNNGG	1 cut(s)	171
BseMI	GCAATG	1 cut(s)	76
BseMII	CTCAG	1 cut(s)	33
BseRI	GAGGAG	2 cut(s)	118, 245
Bsh1236I	CGCG	2 cut(s)	111, 216
BshFI	GGCC	2 cut(s)	31, 56
BsiHKAI	GWGCWC	1 cut(s)	237
BsiSI	CCGG	1 cut(s)	53
BslFI	GGGAC	1 cut(s)	203
BslI	CCNNNNNNNGG	1 cut(s)	171
BsmFI	GGGAC	1 cut(s)	203
BsnI	GGCC	2 cut(s)	31, 56
Bsp1286I	GDGCHC	1 cut(s)	237
BspANI	GGCC	2 cut(s)	31, 56
BspCNI	CTCAG	1 cut(s)	32
BspFNI	CGCG	2 cut(s)	111, 216
BspLI	GGNNCC	1 cut(s)	16
BsrDI	GCAATG	1 cut(s)	76
BsrFI	RCCGGY	1 cut(s)	52
BssAI	RCCGGY	1 cut(s)	52
BssSI	CACGAG	1 cut(s)	347
Bst2BI	CACGAG	1 cut(s)	347
BstDEI	CTNAG	1 cut(s)	19
BstFNI	CGCG	2 cut(s)	111, 216
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	2 cut(s)	92, 111
BstNSI	RCATGY	1 cut(s)	253
BstUI	CGCG	2 cut(s)	111, 216
BsuRI	GGCC	2 cut(s)	31, 56
CfoI	GCGC	2 cut(s)	92, 111
Cfr10I	RCCGGY	1 cut(s)	52
CseI	GACGC	2 cut(s)	100, 205
Csp6I	GTAC	1 cut(s)	342
CviAII	CATG	3 cut(s)	250, 260, 284
CviJI	RGCY	7 cut(s)	17, 23, 31, 56, 128, 235, 363
CviKI_1	RGCY	7 cut(s)	17, 23, 31, 56, 128, 235, 363
CviQI	GTAC	1 cut(s)	342
DdeI	CTNAG	1 cut(s)	19
EaeI	YGGCCR	1 cut(s)	54
Ecl136II	GAGCTC	1 cut(s)	235
Eco147I	AGGCCT	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	237
Eco47III	AGCGCT	1 cut(s)	91
Eco53kI	GAGCTC	1 cut(s)	235
Eco57I	CTGAAG	1 cut(s)	189
EcoICRI	GAGCTC	1 cut(s)	235
EcoT38I	GRGCYC	1 cut(s)	237
FaeI	CATG	3 cut(s)	253, 263, 287
FaiI	YATR	6 cut(s)	10, 12, 251, 261, 285, 384
FaqI	GGGAC	1 cut(s)	203
FatI	CATG	3 cut(s)	249, 259, 283
FauNDI	CATATG	1 cut(s)	10
FriOI	GRGCYC	1 cut(s)	237
FspBI	CTAG	2 cut(s)	87, 96
GlaI	GCGC	2 cut(s)	91, 110
HaeII	RGCGCY	1 cut(s)	93
HaeIII	GGCC	2 cut(s)	31, 56
HapII	CCGG	1 cut(s)	53
HgaI	GACGC	2 cut(s)	100, 205
HhaI	GCGC	2 cut(s)	92, 111
Hin1II	CATG	3 cut(s)	253, 263, 287
Hin6I	GCGC	2 cut(s)	90, 109
HinP1I	GCGC	2 cut(s)	90, 109
HindIII	AAGCTT	1 cut(s)	361
HinfI	GANTC	2 cut(s)	144, 225
HpaII	CCGG	1 cut(s)	53
Hpy188III	TCNNGA	2 cut(s)	64, 96
Hpy99I	CGWCG	2 cut(s)	116, 136
HpyAV	CCTTC	1 cut(s)	93
HpyF3I	CTNAG	1 cut(s)	19
Hsp92II	CATG	3 cut(s)	253, 263, 287
HspAI	GCGC	2 cut(s)	90, 109
LmnI	GCTCC	2 cut(s)	14, 258
LpnPI	CCDG	4 cut(s)	66, 104, 178, 235
LweI	GCATC	1 cut(s)	276
MaeI	CTAG	2 cut(s)	87, 96
MfeI	CAATTG	1 cut(s)	169
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	6 cut(s)	169, 302, 334, 366, 371, 387
MluI	ACGCGT	1 cut(s)	214
MlyI	GAGTC	1 cut(s)	138
MmeI	TCCRAC	1 cut(s)	337
MnlI	CCTC	6 cut(s)	28, 42, 96, 99, 139, 266
MseI	TTAA	2 cut(s)	78, 365
MslI	CAYNNNNRTG	1 cut(s)	248
MspI	CCGG	1 cut(s)	53
MunI	CAATTG	1 cut(s)	169
MvnI	CGCG	2 cut(s)	111, 216
NdeI	CATATG	1 cut(s)	10
NlaIII	CATG	3 cut(s)	253, 263, 287
NlaIV	GGNNCC	1 cut(s)	16
NspI	RCATGY	1 cut(s)	253
PceI	AGGCCT	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	225
PflMI	CCANNNNNTGG	1 cut(s)	171
PleI	GAGTC	1 cut(s)	138
PpsI	GAGTC	1 cut(s)	138
Psp124BI	GAGCTC	1 cut(s)	237
PspN4I	GGNNCC	1 cut(s)	16
RsaI	GTAC	1 cut(s)	343
RsaNI	GTAC	1 cut(s)	342
RseI	CAYNNNNRTG	1 cut(s)	248
SacI	GAGCTC	1 cut(s)	237
SaqAI	TTAA	2 cut(s)	78, 365
SchI	GAGTC	1 cut(s)	138
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	4 cut(s)	25, 161, 237, 365
SfaNI	GCATC	1 cut(s)	276
SmiMI	CAYNNNNRTG	1 cut(s)	248
Sse9I	AATT	6 cut(s)	169, 302, 334, 366, 371, 387
SseBI	AGGCCT	1 cut(s)	31
SspMI	CTAG	2 cut(s)	87, 96
SstI	GAGCTC	1 cut(s)	237
StuI	AGGCCT	1 cut(s)	31
TaqI	TCGA	1 cut(s)	237
TaqII	GACCGA	1 cut(s)	104
TasI	AATT	6 cut(s)	169, 302, 334, 366, 371, 387
TatI	WGTACW	1 cut(s)	341
TfiI	GAWTC	1 cut(s)	225
Tru1I	TTAA	2 cut(s)	78, 365
Tru9I	TTAA	2 cut(s)	78, 365
TspDTI	ATGAA	4 cut(s)	170, 279, 285, 394
Van91I	CCANNNNNTGG	1 cut(s)	171
XapI	RAATTY	2 cut(s)	334, 387
XbaI	TCTAGA	1 cut(s)	95
XceI	RCATGY	1 cut(s)	253
XspI	CTAG	2 cut(s)	87, 96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.