Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003024

Physical Location & Seq

Genomic Coordinates Reverse (-)

34049331 .. 34050075

Gene Structure 745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008647

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGCTTCCAGAGCCAGTTAAGAAACCAAAATTACAATCCTACTATGGCCATCTGATGCATTCCCCAACCTTAAAGGAGGCACACACATATATTCTCAAATTGAAACTCTTATGCGATTTTGCCACCGCCGACGACTTTGAAAGCATTGACTGCTTCAGATCTCAGCGGCCAGATCGGAGCCGCTCGTCGGAGAATGACTCAGCTTCTAATTTGAGCTCCTGGCCACCGAGCTTGATGATCGGAAGCTCAAGGAATGCAATCTCAGATTGGAGCTCAAATATGCAATCTCAGATCCCGACGGATTCAAATCGAAGCTTAGATAAGCACTCTCAGATCCCGGCGGTGGGAACGAGGCCAAAGCTGCAAGAAGAGGTTGGAGTTACCTTTGAAGGCGGAGACGATGTCGTCACTGTCGTTATTGGACCTGACGCTAGAGCCGTAAGGCCAGGTGGTTTTGCGACACTGGACCTGGCATACCAGATCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

163

Amino Acids

17.91

Weight (kDa)

5.77

Isoelectric Point (pI)

60.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66670
fragaria_vesca	FvH4_7g04110
malus_domestica	MD02G1275200.v1.1 MD07G1043100.v1.1
prunus_persica	Prupe.2G045800_v2.0.a1 Prupe.2G045800_v2.0.a1 Prupe.2G045800_v2.0.a1
pyrus_communis	pycom02g23530 pycom07g03020
rosa_chinensis	RchiOBHm_Chr1g0327981 RchiOBHm_Chr1g0372191
rosa_laevigata	RLG00000008647 RLG00000012938 RLG00000021509 RLG00000029950
rosa_multiflora	Rmu_sc0000064.1_g000027 Rmu_sc0000272.1_g000043 Rmu_sc0001755.1_g000019 Rmu_sc0003977.1_g000001 Rmu_sc0007782.1_g000018 Rmu_ssc0000309.1_g000031
rosa_roxburghii	Rroxscaffold_4G00322040
rosa_rugosa	Rorug01G0073100
rosa_samantha	Rh1AG089900 Rh1BG071800 Rh1BG342100 Rh1CG086900 Rh1DG093600 Rh2BG432000 Rh2CG303000 Rh6AG065100 Rh6AG270700 Rh6BG088100 Rh6DG224400 Rh7DG308700
rosa_wichuraiana	Rw0G022860 Rw1G006940 Rw1G006960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	404
AccBSI	CCGCTC	1 cut(s)	183
AciI	CCGC	5 cut(s)	126, 166, 181, 341, 393
AclWI	GGATC	2 cut(s)	286, 328
AcoI	YGGCCR	3 cut(s)	46, 167, 221
AcuI	CTGAAG	1 cut(s)	139
AfiI	CCNNNNNNNGG	3 cut(s)	187, 343, 344
AgsI	TTSAA	4 cut(s)	103, 140, 306, 389
AjnI	CCWGG	3 cut(s)	218, 445, 468
AluBI	AGCT	7 cut(s)	203, 216, 231, 246, 273, 315, 361
AluI	AGCT	7 cut(s)	203, 216, 231, 246, 273, 315, 361
Alw21I	GWGCWC	2 cut(s)	218, 275
Alw26I	GTCTC	1 cut(s)	390
AlwI	GGATC	2 cut(s)	286, 328
AoxI	GGCC	5 cut(s)	46, 167, 221, 353, 443
ApeKI	GCWGC	1 cut(s)	361
AspS9I	GGNCC	2 cut(s)	422, 466
AsuC2I	CCSGG	1 cut(s)	338
AvaII	GGWCC	2 cut(s)	422, 466
BalI	TGGCCA	2 cut(s)	48, 223
BanII	GRGCYC	2 cut(s)	218, 275
Bbv12I	GWGCWC	2 cut(s)	218, 275
BbvI	GCAGC	1 cut(s)	348
BccI	CCATC	1 cut(s)	57
BceAI	ACGGC	1 cut(s)	422
BciT130I	CCWGG	3 cut(s)	220, 447, 470
BcnI	CCSGG	1 cut(s)	338
BcoDI	GTCTC	1 cut(s)	390
BfaI	CTAG	2 cut(s)	432, 487
BglII	AGATCT	2 cut(s)	158, 480
BisI	GCNGC	3 cut(s)	167, 181, 362
BlsI	GCNGC	3 cut(s)	168, 182, 363
Bme1390I	CCNGG	4 cut(s)	220, 338, 447, 470
Bme18I	GGWCC	2 cut(s)	422, 466
BmgT120I	GGNCC	2 cut(s)	422, 466
BmiI	GGNNCC	1 cut(s)	179
BmrFI	CCNGG	4 cut(s)	220, 338, 447, 470
BmsI	GCATC	1 cut(s)	45
BplI	GAGNNNNNCTC	2 cut(s)	182, 214
BpuEI	CTTGAG	1 cut(s)	232
BpuMI	CCSGG	1 cut(s)	338
BsaBI	GATNNNNATC	1 cut(s)	306
BsaXI	ACNNNNNCTCC	2 cut(s)	387, 417
Bsc4I	CCNNNNNNNGG	3 cut(s)	187, 343, 344
Bse1I	ACTGG	2 cut(s)	14, 468
Bse8I	GATNNNNATC	1 cut(s)	306
BseBI	CCWGG	3 cut(s)	220, 447, 470
BseJI	GATNNNNATC	1 cut(s)	306
BseLI	CCNNNNNNNGG	3 cut(s)	187, 343, 344
BseMII	CTCAG	5 cut(s)	176, 213, 276, 302, 344
BseNI	ACTGG	2 cut(s)	14, 468
BseXI	GCAGC	1 cut(s)	348
BshFI	GGCC	5 cut(s)	48, 169, 223, 355, 445
BsiHKAI	GWGCWC	2 cut(s)	218, 275
BsiSI	CCGG	1 cut(s)	338
BslI	CCNNNNNNNGG	3 cut(s)	187, 343, 344
BsmAI	GTCTC	1 cut(s)	390
BsmBI	CGTCTC	1 cut(s)	390
BsmI	GAATGC	2 cut(s)	58, 259
BsnI	GGCC	5 cut(s)	48, 169, 223, 355, 445
Bsp1286I	GDGCHC	2 cut(s)	218, 275
Bsp143I	GATC	6 cut(s)	158, 172, 237, 291, 333, 480
BspACI	CCGC	5 cut(s)	126, 166, 181, 341, 393
BspANI	GGCC	5 cut(s)	48, 169, 223, 355, 445
BspCNI	CTCAG	5 cut(s)	175, 212, 275, 301, 343
BspLI	GGNNCC	1 cut(s)	179
BspPI	GGATC	2 cut(s)	286, 328
BsrBI	CCGCTC	1 cut(s)	183
BsrI	ACTGG	2 cut(s)	14, 468
BssMI	GATC	6 cut(s)	158, 172, 237, 291, 333, 480
Bst2UI	CCWGG	3 cut(s)	220, 447, 470
Bst4CI	ACNGT	1 cut(s)	412
Bst6I	CTCTTC	1 cut(s)	363
BstAPI	GCANNNNNTGC	1 cut(s)	150
BstDEI	CTNAG	6 cut(s)	162, 199, 262, 288, 316, 330
BstKTI	GATC	6 cut(s)	161, 175, 240, 294, 336, 483
BstMAI	GTCTC	1 cut(s)	390
BstMBI	GATC	6 cut(s)	158, 172, 237, 291, 333, 480
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 150, 361
BstNI	CCWGG	3 cut(s)	220, 447, 470
BstSCI	CCNGG	4 cut(s)	218, 336, 445, 468
BstV1I	GCAGC	1 cut(s)	348
BstX2I	RGATCY	4 cut(s)	158, 291, 333, 480
BstYI	RGATCY	4 cut(s)	158, 291, 333, 480
BsuRI	GGCC	5 cut(s)	48, 169, 223, 355, 445
BtsIMutI	CAGTG	2 cut(s)	408, 461
Cfr13I	GGNCC	2 cut(s)	422, 466
CseI	GACGC	1 cut(s)	437
CspCI	CAANNNNNGTGG	2 cut(s)	213, 248
DdeI	CTNAG	6 cut(s)	162, 199, 262, 288, 316, 330
DpnI	GATC	6 cut(s)	160, 174, 239, 293, 335, 482
DpnII	GATC	6 cut(s)	158, 172, 237, 291, 333, 480
DrdI	GACNNNNNNGTC	1 cut(s)	404
DseDI	GACNNNNNNGTC	1 cut(s)	404
EaeI	YGGCCR	3 cut(s)	46, 167, 221
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
EciI	GGCGGA	1 cut(s)	408
Ecl136II	GAGCTC	2 cut(s)	216, 273
Eco24I	GRGCYC	2 cut(s)	218, 275
Eco47I	GGWCC	2 cut(s)	422, 466
Eco53kI	GAGCTC	2 cut(s)	216, 273
Eco57I	CTGAAG	1 cut(s)	139
EcoICRI	GAGCTC	2 cut(s)	216, 273
EcoRII	CCWGG	3 cut(s)	218, 445, 468
EcoT22I	ATGCAT	1 cut(s)	60
EcoT38I	GRGCYC	2 cut(s)	218, 275
Esp3I	CGTCTC	1 cut(s)	390
FaiI	YATR	6 cut(s)	45, 88, 90, 112, 281, 475
Fnu4HI	GCNGC	3 cut(s)	167, 181, 362
FriOI	GRGCYC	2 cut(s)	218, 275
Fsp4HI	GCNGC	3 cut(s)	167, 181, 362
FspBI	CTAG	2 cut(s)	432, 487
GluI	GCNGC	3 cut(s)	167, 181, 362
HaeIII	GGCC	5 cut(s)	48, 169, 223, 355, 445
HapII	CCGG	1 cut(s)	338
HgaI	GACGC	1 cut(s)	437
HindIII	AAGCTT	1 cut(s)	313
HinfI	GANTC	2 cut(s)	197, 302
HpaII	CCGG	1 cut(s)	338
Hpy188I	TCNGA	8 cut(s)	54, 158, 177, 190, 242, 265, 291, 333
Hpy188III	TCNNGA	2 cut(s)	8, 295
Hpy99I	CGWCG	3 cut(s)	134, 190, 301
HpyAV	CCTTC	1 cut(s)	383
HpyCH4III	ACNGT	1 cut(s)	412
HpyCH4V	TGCA	4 cut(s)	58, 257, 283, 364
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 150, 361
HpyF3I	CTNAG	6 cut(s)	162, 199, 262, 288, 316, 330
Kzo9I	GATC	6 cut(s)	158, 172, 237, 291, 333, 480
LmnI	GCTCC	3 cut(s)	177, 221, 270
Lsp1109I	GCAGC	1 cut(s)	348
LweI	GCATC	1 cut(s)	45
MaeI	CTAG	2 cut(s)	432, 487
MaeIII	GTNAC	2 cut(s)	379, 406
MalI	GATC	6 cut(s)	160, 174, 239, 293, 335, 482
MbiI	CCGCTC	1 cut(s)	183
MboI	GATC	6 cut(s)	158, 172, 237, 291, 333, 480
MboII	GAAGA	2 cut(s)	380, 475
MflI	RGATCY	4 cut(s)	158, 291, 333, 480
MhlI	GDGCHC	2 cut(s)	218, 275
MlsI	TGGCCA	2 cut(s)	48, 223
MluCI	AATT	3 cut(s)	29, 98, 208
MluNI	TGGCCA	2 cut(s)	48, 223
MlyI	GAGTC	1 cut(s)	191
MmeI	TCCRAC	2 cut(s)	168, 355
MnlI	CCTC	3 cut(s)	70, 345, 364
Mox20I	TGGCCA	2 cut(s)	48, 223
Mph1103I	ATGCAT	1 cut(s)	60
MscI	TGGCCA	2 cut(s)	48, 223
MseI	TTAA	2 cut(s)	18, 71
Msp20I	TGGCCA	2 cut(s)	48, 223
MspA1I	CMGCKG	1 cut(s)	166
MspI	CCGG	1 cut(s)	338
MspR9I	CCNGG	4 cut(s)	220, 338, 447, 470
Mva1269I	GAATGC	2 cut(s)	58, 259
MvaI	CCWGG	3 cut(s)	220, 447, 470
MwoI	GCNNNNNNNGC	3 cut(s)	10, 150, 361
NciI	CCSGG	1 cut(s)	338
NdeII	GATC	6 cut(s)	158, 172, 237, 291, 333, 480
NlaIV	GGNNCC	1 cut(s)	179
NmuCI	GTSAC	1 cut(s)	406
NsiI	ATGCAT	1 cut(s)	60
PcsI	WCGNNNNNNNCGW	2 cut(s)	411, 435
PctI	GAATGC	2 cut(s)	58, 259
PfeI	GAWTC	1 cut(s)	302
PflFI	GACNNNGTC	1 cut(s)	401
PkrI	GCNGC	3 cut(s)	168, 182, 363
PleI	GAGTC	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	191
Psp124BI	GAGCTC	2 cut(s)	218, 275
Psp6I	CCWGG	3 cut(s)	218, 445, 468
PspGI	CCWGG	3 cut(s)	218, 445, 468
PspN4I	GGNNCC	1 cut(s)	179
PspPI	GGNCC	2 cut(s)	422, 466
PsuI	RGATCY	4 cut(s)	158, 291, 333, 480
PsyI	GACNNNGTC	1 cut(s)	401
SacI	GAGCTC	2 cut(s)	218, 275
SaqAI	TTAA	2 cut(s)	18, 71
SatI	GCNGC	3 cut(s)	167, 181, 362
Sau3AI	GATC	6 cut(s)	158, 172, 237, 291, 333, 480
Sau96I	GGNCC	2 cut(s)	422, 466
SchI	GAGTC	1 cut(s)	191
ScrFI	CCNGG	4 cut(s)	220, 338, 447, 470
SduI	GDGCHC	2 cut(s)	218, 275
SfaNI	GCATC	1 cut(s)	45
SinI	GGWCC	2 cut(s)	422, 466
SmlI	CTYRAG	1 cut(s)	247
SmoI	CTYRAG	1 cut(s)	247
Sse9I	AATT	3 cut(s)	29, 98, 208
SsiI	CCGC	5 cut(s)	126, 166, 181, 341, 393
SspMI	CTAG	2 cut(s)	432, 487
SstI	GAGCTC	2 cut(s)	218, 275
StyD4I	CCNGG	4 cut(s)	218, 336, 445, 468
TaaI	ACNGT	1 cut(s)	412
TaqI	TCGA	1 cut(s)	310
TasI	AATT	3 cut(s)	29, 98, 208
TauI	GCSGC	2 cut(s)	169, 183
TfiI	GAWTC	1 cut(s)	302
Tru1I	TTAA	2 cut(s)	18, 71
Tru9I	TTAA	2 cut(s)	18, 71
TscAI	CASTG	2 cut(s)	415, 468
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	1 cut(s)	361
Tsp45I	GTSAC	1 cut(s)	406
TspGWI	ACGGA	1 cut(s)	314
TspRI	CASTG	2 cut(s)	415, 468
Tth111I	GACNNNGTC	1 cut(s)	401
VpaK11BI	GGWCC	2 cut(s)	422, 466
XspI	CTAG	2 cut(s)	432, 487
Zsp2I	ATGCAT	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.