Prupe.2G096600_v2.0.a1

U3 small nucleolar RNA-associated protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Forward (+)
15184188 .. 15190435
6248 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G096600.2

Sequence Viewer

Length: 1614 bp
ATGGGTGTGAAACAAGACGATGGCAGTATCATGCCTACATCTGAACAGGAGAAGATCTCTGATGAGTTAGATATCAGAGTGAAGAAGTTTCTTAGAGGCGAAAAAACTAATTTGGAGGGCTTGCAAGATAAAAAATTGAAGGGTCAACTTGCTGTTAGAGAAGAATTGTTTGGAAAATCTGCACAAGCTGCTGCCAAGGCTGAGAAGTGGCTTCTGCCAAGTGAGGGAGGCTATTTGGAGGCTGAAGGCATAGAGAAAACATGGAGGATCAAACAAGAATCAATTGCTCATGAAGTAGATATCTTAAGCGCAAGGAGTCAATATGATATTGTCTTACCAGATCTCGGTCCTTACACACTGGATTTCACCTCAAGTGGTCGGTATATGGCAGCTGGTGGACGCAAGGGCCATCTGGCTATTTTAGACATGAAGAATATGAGCCTGGTTAAAGAAATCCAGGTTAGAGAAACAGTGCGTGATGTGGTGTTCTTGCACAATGAGTTGTTCTTTGCTGCTGCCCAGAAAAAGTATCCATATATTTATAACAGGGATGGCACTGAACTTCATTGCTTAAAGGAACATGGCGCAGTTTTAAGGCTTCAATTTTTGAAAAACCATTTTCTCTTGGCATCAATAAACAAATCTGGGCAGCTTCGTTATCAGGATGTAACAATGGGCGGGATGGTAGCTAATTACAGGACTGGCTTAGGCCGTACTGATGTGATGCAGGTGAACCCCTATAACGGGGTGGTTGCTTTGGGTCATTCACTTGGTACAGTTTCCATGTGGAAGCCTACAAGCTCTACTGCTCTTCTCAAGAGGCTGTGTCACAAGGGGCCCATCACAGCAATGGCATTCCACCCAAATGGCCATCTCATGGCTACAGCTGGGAAAGAGAAGAAAATTATGCTTTGGGATTTGAGGAACCTTAAGGATGAGCCACTCCAGACTTTGCCGGGGAATGCAGATACTCTTGATTTCAGTCAGAAAGGTCTGCTTGCTCGTTCAACTTCATCATTTGTACAGATCCTTAGAGATTCATCTGGGACTCAGAACTACAATAATTATATGACTCATAAAATAATTAAAGGTTACCAAGTAGAAAAAGTGTTGTTTCGACCTTATGAAGATGTTCTCGGCATAGGGCACTCCATGGGGTGGTCTAGTATTCTGATTCCTGGTTCTGGGGAACCCAACTTTGATTCTTGGGTGGCGAATCCATTTGAAACATCTAAACAGAGAAGAGAGAGGGAAGTGCACTCTCTACTTGATAAGCTCCCGCCTGAGACAATCATGTTGAATCCCACAAAGATTGGCACAGTAAAGCCTCAGAGGAGGAAAGAGAAGAAAACAAAGGAAGAGAAAGAGGCCGACATGGAAGCCGCTGTGGAAGCGGTCAAGGGCATTGAACCAAAGAAGAAAACAAAAGGAAGGAATAAGCCGAGTAAGAGGACAAAGAAGAAGCAGGAGATAGTTGCGAATGCCAAGAGGCCTTTCTTGGAGCAACAAAAGAAAGAGGAAGAACAAGTGGTTAGGAAGAAGCAGAAAGTAATTGAGCAAGTGGAGCTACCAACATCTTTGCAGCGGTTTTCTCGCAAGAAATCAGCTACATAG

Protein Analysis

538

Amino Acids

60.69

Weight (kDa)

9.61

Isoelectric Point (pI)

40.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 543
AarI CACCTGC 1 cut(s) 718
Acc36I ACCTGC 1 cut(s) 718
AccB7I CCANNNNNTGG 2 cut(s) 877, 1158
AciI CCGC 5 cut(s) 678, 1280, 1383, 1394, 1585
AclWI GGATC 2 cut(s) 275, 1021
AcoI YGGCCR 1 cut(s) 868
AcuI CTGAAG 1 cut(s) 264
AfaI GTAC 3 cut(s) 715, 775, 1023
AfiI CCNNNNNNNGG 7 cut(s) 224, 344, 743, 744, 877, 1158, 1184
AflII CTTAAG 2 cut(s) 304, 929
AgsI TTSAA 7 cut(s) 139, 602, 610, 1008, 1226, 1300, 1409
AjnI CCWGG 3 cut(s) 441, 456, 1177
AjuI GAANNNNNNNTTGG 4 cut(s) 153, 185, 1478, 1510
AluBI AGCT 9 cut(s) 188, 392, 652, 689, 801, 887, 1276, 1567, 1607
AluI AGCT 9 cut(s) 188, 392, 652, 689, 801, 887, 1276, 1567, 1607
Alw21I GWGCWC 1 cut(s) 1260
Alw26I GTCTC 1 cut(s) 1280
Alw44I GTGCAC 1 cut(s) 1256
AlwI GGATC 2 cut(s) 275, 1021
AoxI GGCC 6 cut(s) 406, 709, 836, 868, 1368, 1490
ApaI GGGCCC 1 cut(s) 840
ApaLI GTGCAC 1 cut(s) 1256
ApeKI GCWGC 7 cut(s) 188, 191, 389, 512, 515, 649, 1582
Asp700I GAANNNNTTC 1 cut(s) 1131
AspLEI GCGC 2 cut(s) 311, 587
AspS9I GGNCC 4 cut(s) 347, 406, 836, 837
AsuC2I CCSGG 1 cut(s) 957
AsuHPI GGTGA 2 cut(s) 358, 742
AvaII GGWCC 1 cut(s) 347
BaeGI GKGCMC 3 cut(s) 840, 1149, 1260
BalI TGGCCA 1 cut(s) 870
BanII GRGCYC 1 cut(s) 840
Bbv12I GWGCWC 1 cut(s) 1260
BbvI GCAGC 7 cut(s) 175, 178, 401, 499, 502, 661, 1594
BccI CCATC 6 cut(s) 14, 417, 545, 676, 848, 879
BceAI ACGGC 1 cut(s) 696
BciT130I CCWGG 3 cut(s) 443, 458, 1179
BciVI GTATCC 1 cut(s) 540
BcnI CCSGG 1 cut(s) 957
BcoDI GTCTC 1 cut(s) 1280
BfaI CTAG 1 cut(s) 1164
BfmI CTRYAG 1 cut(s) 882
BfrI CTTAAG 2 cut(s) 304, 929
BfuAI ACCTGC 1 cut(s) 718
BfuI GTATCC 1 cut(s) 540
BglII AGATCT 2 cut(s) 54, 340
BisI GCNGC 8 cut(s) 189, 192, 390, 513, 516, 650, 1383, 1583
BlsI GCNGC 8 cut(s) 190, 193, 391, 514, 517, 651, 1384, 1584
Bme1390I CCNGG 4 cut(s) 443, 458, 957, 1179
Bme18I GGWCC 1 cut(s) 347
BmgT120I GGNCC 4 cut(s) 347, 406, 836, 837
BmiI GGNNCC 4 cut(s) 837, 838, 926, 1191
BmrFI CCNGG 4 cut(s) 443, 458, 957, 1179
BmsI GCATC 2 cut(s) 638, 714
BplI GAGNNNNNCTC 2 cut(s) 41, 73
BpmI CTGGAG 1 cut(s) 929
Bpu10I CCTNAGC 1 cut(s) 706
BpuEI CTTGAG 2 cut(s) 355, 800
BpuMI CCSGG 1 cut(s) 957
BsaJI CCNNGG 3 cut(s) 195, 956, 1152
Bsc4I CCNNNNNNNGG 7 cut(s) 224, 344, 743, 744, 877, 1158, 1184
Bse1I ACTGG 2 cut(s) 363, 706
Bse3DI GCAATG 2 cut(s) 565, 855
BseBI CCWGG 3 cut(s) 443, 458, 1179
BseDI CCNNGG 3 cut(s) 195, 956, 1152
BseGI GGATG 4 cut(s) 556, 670, 687, 940
BseLI CCNNNNNNNGG 7 cut(s) 224, 344, 743, 744, 877, 1158, 1184
BseMI GCAATG 2 cut(s) 565, 855
BseMII CTCAG 4 cut(s) 192, 1064, 1275, 1343
BseNI ACTGG 2 cut(s) 363, 706
BseRI GAGGAG 1 cut(s) 1348
BseSI GKGCMC 3 cut(s) 840, 1149, 1260
BseXI GCAGC 7 cut(s) 175, 178, 401, 499, 502, 661, 1594
BseYI CCCAGC 1 cut(s) 887
BsgI GTGCAG 1 cut(s) 165
BshFI GGCC 6 cut(s) 408, 711, 838, 870, 1370, 1492
BsiHKAI GWGCWC 1 cut(s) 1260
BsiSI CCGG 1 cut(s) 956
BslFI GGGAC 1 cut(s) 1060
BslI CCNNNNNNNGG 7 cut(s) 224, 344, 743, 744, 877, 1158, 1184
BsmAI GTCTC 1 cut(s) 1280
BsmFI GGGAC 1 cut(s) 1060
BsmI GAATGC 3 cut(s) 854, 967, 1486
BsnI GGCC 6 cut(s) 408, 711, 838, 870, 1370, 1492
Bsp120I GGGCCC 1 cut(s) 836
Bsp1286I GDGCHC 3 cut(s) 840, 1149, 1260
Bsp1407I TGTACA 1 cut(s) 1021
Bsp143I GATC 4 cut(s) 54, 267, 340, 1026
Bsp19I CCATGG 1 cut(s) 1152
BspACI CCGC 5 cut(s) 678, 1280, 1383, 1394, 1585
BspANI GGCC 6 cut(s) 408, 711, 838, 870, 1370, 1492
BspCNI CTCAG 4 cut(s) 193, 1063, 1276, 1342
BspHI TCATGA 1 cut(s) 289
BspLI GGNNCC 4 cut(s) 837, 838, 926, 1191
BspMI ACCTGC 1 cut(s) 718
BspPI GGATC 2 cut(s) 275, 1021
BspQI GCTCTTC 1 cut(s) 816
BspTI CTTAAG 2 cut(s) 304, 929
BsrDI GCAATG 2 cut(s) 565, 855
BsrGI TGTACA 1 cut(s) 1021
BsrI ACTGG 2 cut(s) 363, 706
BssECI CCNNGG 3 cut(s) 195, 956, 1152
BssMI GATC 4 cut(s) 54, 267, 340, 1026
BssT1I CCWWGG 2 cut(s) 195, 1152
Bst2UI CCWGG 3 cut(s) 443, 458, 1179
Bst4CI ACNGT 3 cut(s) 472, 778, 1321
Bst6I CTCTTC 3 cut(s) 816, 1237, 1353
BstAFI CTTAAG 2 cut(s) 304, 929
BstAPI GCANNNNNTGC 1 cut(s) 188
BstAUI TGTACA 1 cut(s) 1021
BstC8I GCNNGC 2 cut(s) 122, 999
BstDEI CTNAG 7 cut(s) 92, 201, 706, 1031, 1050, 1284, 1329
BstDSI CCRYGG 1 cut(s) 1152
BstEII GGTNACC 1 cut(s) 1091
BstF5I GGATG 4 cut(s) 556, 670, 687, 940
BstHHI GCGC 2 cut(s) 311, 587
BstKTI GATC 4 cut(s) 57, 270, 343, 1029
BstMAI GTCTC 1 cut(s) 1280
BstMBI GATC 4 cut(s) 54, 267, 340, 1026
BstMWI GCNNNNNNNGC 4 cut(s) 188, 197, 1391, 1564
BstNI CCWGG 3 cut(s) 443, 458, 1179
BstPI GGTNACC 1 cut(s) 1091
BstSCI CCNGG 4 cut(s) 441, 456, 955, 1177
BstSFI CTRYAG 1 cut(s) 882
BstSLI GKGCMC 3 cut(s) 840, 1149, 1260
BstV1I GCAGC 7 cut(s) 175, 178, 401, 499, 502, 661, 1594
BstX2I RGATCY 3 cut(s) 54, 340, 1026
BstXI CCANNNNNNTGG 1 cut(s) 866
BstYI RGATCY 3 cut(s) 54, 340, 1026
BsuI GTATCC 1 cut(s) 540
BsuRI GGCC 6 cut(s) 408, 711, 838, 870, 1370, 1492
BtgI CCRYGG 1 cut(s) 1152
BtsCI GGATG 4 cut(s) 556, 670, 687, 940
BtsIMutI CAGTG 3 cut(s) 356, 477, 555
BveI ACCTGC 1 cut(s) 718
Cac8I GCNNGC 2 cut(s) 122, 999
CciI TCATGA 1 cut(s) 289
CfoI GCGC 2 cut(s) 311, 587
Cfr13I GGNCC 4 cut(s) 347, 406, 836, 837
CseI GACGC 1 cut(s) 408
Csp6I GTAC 3 cut(s) 714, 774, 1022
CspCI CAANNNNNGTGG 2 cut(s) 1294, 1329
CviQI GTAC 3 cut(s) 714, 774, 1022
DdeI CTNAG 7 cut(s) 92, 201, 706, 1031, 1050, 1284, 1329
DpnI GATC 4 cut(s) 56, 269, 342, 1028
DpnII GATC 4 cut(s) 54, 267, 340, 1026
EaeI YGGCCR 1 cut(s) 868
Eam1104I CTCTTC 3 cut(s) 816, 1237, 1353
EarI CTCTTC 3 cut(s) 816, 1237, 1353
Eco130I CCWWGG 2 cut(s) 195, 1152
Eco147I AGGCCT 1 cut(s) 1492
Eco24I GRGCYC 1 cut(s) 840
Eco32I GATATC 2 cut(s) 73, 301
Eco47I GGWCC 1 cut(s) 347
Eco57I CTGAAG 1 cut(s) 264
Eco91I GGTNACC 1 cut(s) 1091
EcoO109I RGGNCCY 1 cut(s) 836
EcoO65I GGTNACC 1 cut(s) 1091
EcoRII CCWGG 3 cut(s) 441, 456, 1177
EcoRV GATATC 2 cut(s) 73, 301
EcoT14I CCWWGG 2 cut(s) 195, 1152
EcoT38I GRGCYC 1 cut(s) 840
ErhI CCWWGG 2 cut(s) 195, 1152
FalI AAGNNNNNCTT 2 cut(s) 981, 1013
FaqI GGGAC 1 cut(s) 1060
FauI CCCGC 2 cut(s) 671, 1287
Fnu4HI GCNGC 8 cut(s) 189, 192, 390, 513, 516, 650, 1383, 1583
FokI GGATG 4 cut(s) 563, 677, 694, 947
FriOI GRGCYC 1 cut(s) 840
Fsp4HI GCNGC 8 cut(s) 189, 192, 390, 513, 516, 650, 1383, 1583
FspBI CTAG 1 cut(s) 1164
GlaI GCGC 2 cut(s) 310, 586
GluI GCNGC 8 cut(s) 189, 192, 390, 513, 516, 650, 1383, 1583
GsaI CCCAGC 1 cut(s) 891
GsuI CTGGAG 1 cut(s) 929
HaeIII GGCC 6 cut(s) 408, 711, 838, 870, 1370, 1492
HapII CCGG 1 cut(s) 956
HgaI GACGC 1 cut(s) 408
HhaI GCGC 2 cut(s) 311, 587
Hin6I GCGC 2 cut(s) 309, 585
HinP1I GCGC 2 cut(s) 309, 585
HincII GTYRAC 1 cut(s) 146
HindII GTYRAC 1 cut(s) 146
HinfI GANTC 9 cut(s) 278, 316, 1037, 1048, 1072, 1174, 1202, 1216, 1300
HpaII CCGG 1 cut(s) 956
HphI GGTGA 2 cut(s) 358, 742
Hpy166II GTNNAC 4 cut(s) 146, 398, 733, 1258
Hpy188I TCNGA 7 cut(s) 43, 61, 77, 987, 1053, 1173, 1332
Hpy188III TCNNGA 5 cut(s) 290, 662, 817, 946, 974
Hpy8I GTNNAC 4 cut(s) 146, 398, 733, 1258
HpyAV CCTTC 3 cut(s) 133, 239, 1425
HpyCH4III ACNGT 3 cut(s) 472, 778, 1321
HpyCH4V TGCA 7 cut(s) 124, 182, 493, 727, 965, 1258, 1582
HpyF10VI GCNNNNNNNGC 4 cut(s) 188, 197, 1391, 1564
HpyF3I CTNAG 7 cut(s) 92, 201, 706, 1031, 1050, 1284, 1329
HspAI GCGC 2 cut(s) 309, 585
Kzo9I GATC 4 cut(s) 54, 267, 340, 1026
LguI GCTCTTC 1 cut(s) 816
LmnI GCTCC 3 cut(s) 1281, 1501, 1564
Lsp1109I GCAGC 7 cut(s) 175, 178, 401, 499, 502, 661, 1594
LweI GCATC 2 cut(s) 638, 714
MaeI CTAG 1 cut(s) 1164
MaeIII GTNAC 3 cut(s) 667, 827, 1091
MalI GATC 4 cut(s) 56, 269, 342, 1028
MboI GATC 4 cut(s) 54, 267, 340, 1026
MfeI CAATTG 1 cut(s) 282
MflI RGATCY 3 cut(s) 54, 340, 1026
MhlI GDGCHC 3 cut(s) 840, 1149, 1260
MlsI TGGCCA 1 cut(s) 870
MluNI TGGCCA 1 cut(s) 870
MlyI GAGTC 3 cut(s) 325, 1042, 1066
Mox20I TGGCCA 1 cut(s) 870
MroXI GAANNNNTTC 1 cut(s) 1131
MscI TGGCCA 1 cut(s) 870
MseI TTAA 6 cut(s) 305, 447, 572, 593, 930, 1086
MslI CAYNNNNRTG 2 cut(s) 848, 864
Msp20I TGGCCA 1 cut(s) 870
MspA1I CMGCKG 4 cut(s) 392, 887, 1385, 1585
MspCI CTTAAG 2 cut(s) 304, 929
MspI CCGG 1 cut(s) 956
MspR9I CCNGG 4 cut(s) 443, 458, 957, 1179
MunI CAATTG 1 cut(s) 282
Mva1269I GAATGC 3 cut(s) 854, 967, 1486
MvaI CCWGG 3 cut(s) 443, 458, 1179
MwoI GCNNNNNNNGC 4 cut(s) 188, 197, 1391, 1564
NciI CCSGG 1 cut(s) 957
NcoI CCATGG 1 cut(s) 1152
NdeII GATC 4 cut(s) 54, 267, 340, 1026
NlaIV GGNNCC 4 cut(s) 837, 838, 926, 1191
NmeAIII GCCGAG 2 cut(s) 1116, 1467
NmuCI GTSAC 1 cut(s) 827
PagI TCATGA 1 cut(s) 289
PaqCI CACCTGC 1 cut(s) 718
PceI AGGCCT 1 cut(s) 1492
PciSI GCTCTTC 1 cut(s) 816
PctI GAATGC 3 cut(s) 854, 967, 1486
PdmI GAANNNNTTC 1 cut(s) 1131
PfeI GAWTC 6 cut(s) 278, 1037, 1174, 1202, 1216, 1300
PflMI CCANNNNNTGG 2 cut(s) 877, 1158
PkrI GCNGC 8 cut(s) 190, 193, 391, 514, 517, 651, 1384, 1584
PleI GAGTC 3 cut(s) 324, 1042, 1066
PpsI GAGTC 3 cut(s) 324, 1042, 1066
PsiI TTATAA 1 cut(s) 543
Psp6I CCWGG 3 cut(s) 441, 456, 1177
PspEI GGTNACC 1 cut(s) 1091
PspFI CCCAGC 1 cut(s) 887
PspGI CCWGG 3 cut(s) 441, 456, 1177
PspN4I GGNNCC 4 cut(s) 837, 838, 926, 1191
PspOMI GGGCCC 1 cut(s) 836
PspPI GGNCC 4 cut(s) 347, 406, 836, 837
PsuI RGATCY 3 cut(s) 54, 340, 1026
PvuII CAGCTG 2 cut(s) 392, 887
RsaI GTAC 3 cut(s) 715, 775, 1023
RsaNI GTAC 3 cut(s) 714, 774, 1022
RseI CAYNNNNRTG 2 cut(s) 848, 864
SapI GCTCTTC 1 cut(s) 816
SaqAI TTAA 6 cut(s) 305, 447, 572, 593, 930, 1086
SatI GCNGC 8 cut(s) 189, 192, 390, 513, 516, 650, 1383, 1583
Sau3AI GATC 4 cut(s) 54, 267, 340, 1026
Sau96I GGNCC 4 cut(s) 347, 406, 836, 837
SchI GAGTC 3 cut(s) 325, 1042, 1066
ScrFI CCNGG 4 cut(s) 443, 458, 957, 1179
SduI GDGCHC 3 cut(s) 840, 1149, 1260
SfaNI GCATC 2 cut(s) 638, 714
SfcI CTRYAG 1 cut(s) 882
SinI GGWCC 1 cut(s) 347
SmiMI CAYNNNNRTG 2 cut(s) 848, 864
SmlI CTYRAG 4 cut(s) 304, 370, 815, 929
SmoI CTYRAG 4 cut(s) 304, 370, 815, 929
SseBI AGGCCT 1 cut(s) 1492
SsiI CCGC 5 cut(s) 678, 1280, 1383, 1394, 1585
SspMI CTAG 1 cut(s) 1164
StuI AGGCCT 1 cut(s) 1492
StyD4I CCNGG 4 cut(s) 441, 456, 955, 1177
StyI CCWWGG 2 cut(s) 195, 1152
TaaI ACNGT 3 cut(s) 472, 778, 1321
TaqI TCGA 1 cut(s) 1117
TaqII GACCGA 1 cut(s) 335
TatI WGTACW 1 cut(s) 1021
TauI GCSGC 1 cut(s) 1385
TfiI GAWTC 6 cut(s) 278, 1037, 1174, 1202, 1216, 1300
Tru1I TTAA 6 cut(s) 305, 447, 572, 593, 930, 1086
Tru9I TTAA 6 cut(s) 305, 447, 572, 593, 930, 1086
TscAI CASTG 3 cut(s) 363, 477, 562
TseFI GTSAC 1 cut(s) 827
TseI GCWGC 7 cut(s) 188, 191, 389, 512, 515, 649, 1582
Tsp45I GTSAC 1 cut(s) 827
TspDTI ATGAA 6 cut(s) 306, 443, 554, 1002, 1029, 1140
TspRI CASTG 3 cut(s) 363, 477, 562
Van91I CCANNNNNTGG 2 cut(s) 877, 1158
Vha464I CTTAAG 2 cut(s) 304, 929
VneI GTGCAC 1 cut(s) 1256
VpaK11BI GGWCC 1 cut(s) 347
XcmI CCANNNNNNNNNTGG 1 cut(s) 847
XmnI GAANNNNTTC 1 cut(s) 1131
XspI CTAG 1 cut(s) 1164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.