Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0003161

Physical Location & Seq

Genomic Coordinates Forward (+)

10143626 .. 10148419

Gene Structure 4794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g14170.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGGGTGTGAAACAAGATGAGGGCAATAATGTGCCTCCAACCAAGAAATCCGACAATATAATTGATGAGCCCGAGAAAAAAATGAACAAGTTTCTTAGAGGCAAAGCTAATTTGGAGGGCTTGCAAGATAAAAAGTTGAAGGGTCAACTTACGGTTCGAGAAGAATTATATGGGAAATCTGCACATGCTGCTGCCATGGCCGAGAAGTGGCTTCTACCAAGTGAGGGAGGCTATTTGGAGGCTGAAGGCACGGAGAAGACATGGAGGATCAAACAAGAATCAATTGCTCGTGAAGTAGATATATCAAGCTCAAGGAATCAATTTGATATTATCTTACCAGATCTCGGACCGTACACGCTGGATTTCACCTCAAGTGGTCGCCATATGGCAGTTGGTGGACGCAAGGGCCATCTGGCTATTGTAGACATGAAGACTATGGGGCTGATTAAAGAATTTCAGGTTAGAGAAACAGTGCGGGATGTGGTGTTCTTGCACAACGATTTATTCTTTGCTGCAGCCCAGAAAAGGTATCCCTATATTTATAACCGGGATGGCACAGAACTTCATTGCTTAAAGGAACATGGTGCAGTTTTAAGGCTTCAATTCTTGAAAAACCACTTCCTTTTGGCATCAATAAACAATTTTGGGCAGCTTCATTATCAGGATGTGACAATGGGTGAGATGGTAGGTAGTTACAGGACAGGCATAGGCCGTACTGATGCGATGCAGGTGAACGCCTATAATGGGGTTGTTGCTTTGGGTCAATCACTTGGTACAGTTTCCATGTGGAAGCCTACAAGCTCTGCGCCTCTACTTAGACTTCTATGTCACAAGGGACCCGTCTCGGCAATCGCATTCCACCCTAATGGCCATCTCATGGCGACAGCTGGGAAAGAGAGGAAAATTAAGCTTTGGGACTTGAGGAAACTTGGGGATGAACCGCTCCAAACCTTACCGGGCAATGCAAAGACGTTGGATTTTAGTCAGAAGGGTCTTTTAGCTTGTCAGCTGGGAAATGGATCATCTGTACAAATCTTGAGAGATTTGGATGGGAATCAGACGTACAAGACATACATGAATCATGGAATGGTTAAAGGTTTCCAAATAGAAAAGCTGTTGTTTCGACCTTATGAAGATGTTTTAGGCATAGGGCACTCTATGGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005732 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BING4CT WD40

Protein Analysis

389

Amino Acids

43.28

Weight (kDa)

9.14

Isoelectric Point (pI)

31.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10530
fragaria_vesca	FvH4_7g06900 FvH4_7g06900
malus_domestica	MD07G1075700.v1.1 MD13G1165600.v1.1
prunus_persica	Prupe.2G096600_v2.0.a1 Prupe.2G096600_v2.0.a1
pyrus_communis	pycom02g20600 pycom07g05980 pycom13g14170
rosa_chinensis	RchiOBHm_Chr1g0336741 RchiOBHm_Chr1g0336801 RchiOBHm_Chr1g0336811 RchiOBHm_Chr1g0336821
rosa_laevigata	RLG00000029332 RLG00000029335 RLG00000029337
rosa_multiflora	Rmu_sc0000907.1_g000012 Rmu_sc0000907.1_g000017 Rmu_sc0000907.1_g000032 Rmu_sc0000907.1_g000033 Rmu_sc0011778.1_g000010
rosa_roxburghii	Rroxscaffold_4G00315350
rosa_rugosa	Rorug01G0127500 Rorug01G0127800 Rorug01G0127900
rosa_samantha	Rh1AG148700 Rh1AG148900 Rh1BG116800 Rh1BG116900 Rh1CG140100 Rh1DG155500 Rh1DG156000 Rh1DG156100 Rh5AG191600
rosa_wichuraiana	Rw1G012000 Rw1G012010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	543
AarI	CACCTGC	1 cut(s)	718
AasI	GACNNNNNNGTC	1 cut(s)	825
Acc36I	ACCTGC	1 cut(s)	718
AccB7I	CCANNNNNTGG	1 cut(s)	877
AccBSI	CCGCTC	1 cut(s)	943
AccI	GTMKAC	1 cut(s)	423
AciI	CCGC	2 cut(s)	475, 941
AclWI	GGATC	2 cut(s)	275, 1027
AcoI	YGGCCR	2 cut(s)	198, 868
AcsI	RAATTY	1 cut(s)	452
AcuI	CTGAAG	1 cut(s)	264
AfaI	GTAC	5 cut(s)	353, 715, 775, 1029, 1064
AfiI	CCNNNNNNNGG	6 cut(s)	207, 224, 344, 525, 744, 877
AgsI	TTSAA	3 cut(s)	139, 602, 610
AloI	GAACNNNNNNTCC	2 cut(s)	470, 502
AluBI	AGCT	9 cut(s)	107, 309, 652, 801, 887, 910, 1001, 1009, 1114
AluI	AGCT	9 cut(s)	107, 309, 652, 801, 887, 910, 1001, 1009, 1114
Alw26I	GTCTC	1 cut(s)	847
AlwI	GGATC	2 cut(s)	275, 1027
Ama87I	CYCGRG	1 cut(s)	71
AoxI	GGCC	4 cut(s)	198, 406, 709, 868
ApeKI	GCWGC	5 cut(s)	188, 191, 512, 515, 649
ApoI	RAATTY	1 cut(s)	452
AspLEI	GCGC	1 cut(s)	808
AspS9I	GGNCC	3 cut(s)	347, 406, 836
AsuC2I	CCSGG	2 cut(s)	548, 957
AsuHPI	GGTGA	3 cut(s)	358, 689, 742
AvaI	CYCGRG	1 cut(s)	71
AvaII	GGWCC	2 cut(s)	347, 836
BaeGI	GKGCMC	1 cut(s)	1155
BalI	TGGCCA	1 cut(s)	870
BanII	GRGCYC	1 cut(s)	72
BauI	CACGAG	1 cut(s)	288
BbsI	GAAGAC	2 cut(s)	263, 437
BbvI	GCAGC	5 cut(s)	175, 178, 499, 527, 661
BccI	CCATC	5 cut(s)	417, 545, 676, 879, 1043
BceAI	ACGGC	1 cut(s)	696
BciVI	GTATCC	1 cut(s)	540
BcnI	CCSGG	2 cut(s)	548, 957
BcoDI	GTCTC	1 cut(s)	847
BfmI	CTRYAG	1 cut(s)	513
BfuAI	ACCTGC	1 cut(s)	718
BfuI	GTATCC	1 cut(s)	540
BglII	AGATCT	1 cut(s)	340
BisI	GCNGC	5 cut(s)	189, 192, 513, 516, 650
BlsI	GCNGC	5 cut(s)	190, 193, 514, 517, 651
Bme1390I	CCNGG	2 cut(s)	548, 957
Bme18I	GGWCC	2 cut(s)	347, 836
BmeT110I	CYCGRG	1 cut(s)	71
BmgT120I	GGNCC	3 cut(s)	347, 406, 836
BmiI	GGNNCC	2 cut(s)	837, 838
BmrFI	CCNGG	2 cut(s)	548, 957
BmsI	GCATC	3 cut(s)	638, 709, 714
BpiI	GAAGAC	2 cut(s)	263, 437
BpuEI	CTTGAG	4 cut(s)	295, 355, 940, 1057
BpuMI	CCSGG	2 cut(s)	548, 957
BsaBI	GATNNNNATC	1 cut(s)	1053
BsaJI	CCNNGG	1 cut(s)	195
Bsc4I	CCNNNNNNNGG	6 cut(s)	207, 224, 344, 525, 744, 877
Bse3DI	GCAATG	2 cut(s)	565, 967
Bse8I	GATNNNNATC	1 cut(s)	1053
BseDI	CCNNGG	1 cut(s)	195
BseGI	GGATG	5 cut(s)	484, 556, 670, 940, 1054
BseJI	GATNNNNATC	1 cut(s)	1053
BseLI	CCNNNNNNNGG	6 cut(s)	207, 224, 344, 525, 744, 877
BseMI	GCAATG	2 cut(s)	565, 967
BseSI	GKGCMC	1 cut(s)	1155
BseXI	GCAGC	5 cut(s)	175, 178, 499, 527, 661
BseYI	CCCAGC	2 cut(s)	887, 1009
BsgI	GTGCAG	2 cut(s)	165, 606
BshFI	GGCC	4 cut(s)	200, 408, 711, 870
BsiHKCI	CYCGRG	1 cut(s)	71
BsiSI	CCGG	2 cut(s)	547, 956
BslFI	GGGAC	2 cut(s)	849, 929
BslI	CCNNNNNNNGG	6 cut(s)	207, 224, 344, 525, 744, 877
BsmAI	GTCTC	1 cut(s)	847
BsmBI	CGTCTC	1 cut(s)	847
BsmFI	GGGAC	2 cut(s)	849, 929
BsmI	GAATGC	1 cut(s)	854
BsnI	GGCC	4 cut(s)	200, 408, 711, 870
BsoBI	CYCGRG	1 cut(s)	71
Bsp1286I	GDGCHC	2 cut(s)	72, 1155
Bsp1407I	TGTACA	1 cut(s)	1027
Bsp143I	GATC	3 cut(s)	267, 340, 1019
Bsp19I	CCATGG	1 cut(s)	195
BspACI	CCGC	2 cut(s)	475, 941
BspANI	GGCC	4 cut(s)	200, 408, 711, 870
BspLI	GGNNCC	2 cut(s)	837, 838
BspMAI	CTGCAG	1 cut(s)	517
BspMI	ACCTGC	1 cut(s)	718
BspPI	GGATC	2 cut(s)	275, 1027
BsrBI	CCGCTC	1 cut(s)	943
BsrDI	GCAATG	2 cut(s)	565, 967
BsrGI	TGTACA	1 cut(s)	1027
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	3 cut(s)	267, 340, 1019
BssSI	CACGAG	1 cut(s)	288
BssT1I	CCWWGG	1 cut(s)	195
Bst2BI	CACGAG	1 cut(s)	288
Bst4CI	ACNGT	4 cut(s)	154, 351, 472, 778
BstAPI	GCANNNNNTGC	1 cut(s)	188
BstAUI	TGTACA	1 cut(s)	1027
BstC8I	GCNNGC	1 cut(s)	122
BstDEI	CTNAG	2 cut(s)	95, 815
BstDSI	CCRYGG	1 cut(s)	195
BstF5I	GGATG	5 cut(s)	484, 556, 670, 940, 1054
BstHHI	GCGC	1 cut(s)	808
BstKTI	GATC	3 cut(s)	270, 343, 1022
BstMAI	GTCTC	1 cut(s)	847
BstMBI	GATC	3 cut(s)	267, 340, 1019
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 197
BstNSI	RCATGY	1 cut(s)	188
BstSCI	CCNGG	2 cut(s)	546, 955
BstSFI	CTRYAG	1 cut(s)	513
BstSLI	GKGCMC	1 cut(s)	1155
BstV1I	GCAGC	5 cut(s)	175, 178, 499, 527, 661
BstV2I	GAAGAC	2 cut(s)	263, 437
BstX2I	RGATCY	1 cut(s)	340
BstXI	CCANNNNNNTGG	1 cut(s)	866
BstYI	RGATCY	1 cut(s)	340
BsuI	GTATCC	1 cut(s)	540
BsuRI	GGCC	4 cut(s)	200, 408, 711, 870
BtgI	CCRYGG	1 cut(s)	195
BtgZI	GCGATG	1 cut(s)	737
BtsCI	GGATG	5 cut(s)	484, 556, 670, 940, 1054
BtsIMutI	CAGTG	1 cut(s)	477
BveI	ACCTGC	1 cut(s)	718
Cac8I	GCNNGC	1 cut(s)	122
CfoI	GCGC	1 cut(s)	808
Cfr13I	GGNCC	3 cut(s)	347, 406, 836
CpoI	CGGWCCG	1 cut(s)	347
CseI	GACGC	1 cut(s)	408
Csp6I	GTAC	5 cut(s)	352, 714, 774, 1028, 1063
CspI	CGGWCCG	1 cut(s)	347
CviAII	CATG	9 cut(s)	185, 196, 261, 427, 581, 784, 877, 1075, 1082
CviQI	GTAC	5 cut(s)	352, 714, 774, 1028, 1063
DdeI	CTNAG	2 cut(s)	95, 815
DpnI	GATC	3 cut(s)	269, 342, 1021
DpnII	GATC	3 cut(s)	267, 340, 1019
DrdI	GACNNNNNNGTC	1 cut(s)	825
DseDI	GACNNNNNNGTC	1 cut(s)	825
EaeI	YGGCCR	2 cut(s)	198, 868
Eco130I	CCWWGG	1 cut(s)	195
Eco24I	GRGCYC	1 cut(s)	72
Eco47I	GGWCC	2 cut(s)	347, 836
Eco57I	CTGAAG	1 cut(s)	264
Eco88I	CYCGRG	1 cut(s)	71
EcoO109I	RGGNCCY	1 cut(s)	836
EcoT14I	CCWWGG	1 cut(s)	195
EcoT38I	GRGCYC	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	195
Esp3I	CGTCTC	1 cut(s)	847
FaeI	CATG	9 cut(s)	188, 199, 264, 430, 584, 787, 880, 1078, 1085
FaqI	GGGAC	2 cut(s)	849, 929
FatI	CATG	9 cut(s)	184, 195, 260, 426, 580, 783, 876, 1074, 1081
FauI	CCCGC	1 cut(s)	468
FauNDI	CATATG	1 cut(s)	384
FblI	GTMKAC	1 cut(s)	423
Fnu4HI	GCNGC	5 cut(s)	189, 192, 513, 516, 650
FokI	GGATG	5 cut(s)	491, 563, 677, 947, 1061
FriOI	GRGCYC	1 cut(s)	72
Fsp4HI	GCNGC	5 cut(s)	189, 192, 513, 516, 650
GlaI	GCGC	1 cut(s)	807
GluI	GCNGC	5 cut(s)	189, 192, 513, 516, 650
GsaI	CCCAGC	2 cut(s)	891, 1013
HaeIII	GGCC	4 cut(s)	200, 408, 711, 870
HapII	CCGG	2 cut(s)	547, 956
HgaI	GACGC	1 cut(s)	408
HhaI	GCGC	1 cut(s)	808
Hin1II	CATG	9 cut(s)	188, 199, 264, 430, 584, 787, 880, 1078, 1085
Hin6I	GCGC	1 cut(s)	806
HinP1I	GCGC	1 cut(s)	806
HincII	GTYRAC	1 cut(s)	146
HindII	GTYRAC	1 cut(s)	146
HindIII	AAGCTT	1 cut(s)	908
HinfI	GANTC	4 cut(s)	278, 316, 1054, 1078
HpaII	CCGG	2 cut(s)	547, 956
HphI	GGTGA	3 cut(s)	358, 689, 742
Hpy166II	GTNNAC	5 cut(s)	146, 354, 398, 424, 733
Hpy188I	TCNGA	4 cut(s)	52, 347, 987, 1059
Hpy188III	TCNNGA	5 cut(s)	158, 290, 607, 662, 1036
Hpy8I	GTNNAC	5 cut(s)	146, 354, 398, 424, 733
HpyAV	CCTTC	3 cut(s)	133, 239, 982
HpyCH4III	ACNGT	4 cut(s)	154, 351, 472, 778
HpyCH4IV	ACGT	2 cut(s)	971, 1061
HpyCH4V	TGCA	7 cut(s)	124, 182, 493, 515, 587, 727, 965
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 197
HpyF3I	CTNAG	2 cut(s)	95, 815
HpySE526I	ACGT	2 cut(s)	971, 1061
Hsp92II	CATG	9 cut(s)	188, 199, 264, 430, 584, 787, 880, 1078, 1085
HspAI	GCGC	1 cut(s)	806
KflI	GGGWCCC	1 cut(s)	836
Kzo9I	GATC	3 cut(s)	267, 340, 1019
LmnI	GCTCC	1 cut(s)	948
Lsp1109I	GCAGC	5 cut(s)	175, 178, 499, 527, 661
LweI	GCATC	3 cut(s)	638, 709, 714
MaeII	ACGT	2 cut(s)	971, 1061
MaeIII	GTNAC	3 cut(s)	667, 692, 827
MalI	GATC	3 cut(s)	269, 342, 1021
MbiI	CCGCTC	1 cut(s)	943
MboI	GATC	3 cut(s)	267, 340, 1019
MboII	GAAGA	4 cut(s)	173, 268, 442, 1145
MfeI	CAATTG	1 cut(s)	282
MflI	RGATCY	1 cut(s)	340
MhlI	GDGCHC	2 cut(s)	72, 1155
MlsI	TGGCCA	1 cut(s)	870
MluCI	AATT	9 cut(s)	60, 109, 164, 282, 320, 452, 602, 640, 903
MluNI	TGGCCA	1 cut(s)	870
MmeI	TCCRAC	3 cut(s)	62, 75, 954
Mox20I	TGGCCA	1 cut(s)	870
MscI	TGGCCA	1 cut(s)	870
MseI	TTAA	5 cut(s)	447, 572, 593, 906, 1092
MslI	CAYNNNNRTG	1 cut(s)	864
Msp20I	TGGCCA	1 cut(s)	870
MspA1I	CMGCKG	2 cut(s)	887, 1009
MspI	CCGG	2 cut(s)	547, 956
MspR9I	CCNGG	2 cut(s)	548, 957
MunI	CAATTG	1 cut(s)	282
Mva1269I	GAATGC	1 cut(s)	854
MwoI	GCNNNNNNNGC	2 cut(s)	188, 197
NciI	CCSGG	2 cut(s)	548, 957
NcoI	CCATGG	1 cut(s)	195
NdeI	CATATG	1 cut(s)	384
NdeII	GATC	3 cut(s)	267, 340, 1019
NlaIII	CATG	9 cut(s)	188, 199, 264, 430, 584, 787, 880, 1078, 1085
NlaIV	GGNNCC	2 cut(s)	837, 838
NmeAIII	GCCGAG	2 cut(s)	226, 824
NmuCI	GTSAC	2 cut(s)	667, 827
NspI	RCATGY	1 cut(s)	188
PaqCI	CACCTGC	1 cut(s)	718
PctI	GAATGC	1 cut(s)	854
PfeI	GAWTC	4 cut(s)	278, 316, 1054, 1078
PflMI	CCANNNNNTGG	1 cut(s)	877
PkrI	GCNGC	5 cut(s)	190, 193, 514, 517, 651
PpuMI	RGGWCCY	1 cut(s)	836
PsiI	TTATAA	1 cut(s)	543
Psp5II	RGGWCCY	1 cut(s)	836
PspFI	CCCAGC	2 cut(s)	887, 1009
PspN4I	GGNNCC	2 cut(s)	837, 838
PspPI	GGNCC	3 cut(s)	347, 406, 836
PspPPI	RGGWCCY	1 cut(s)	836
PstI	CTGCAG	1 cut(s)	517
PsuI	RGATCY	1 cut(s)	340
PvuII	CAGCTG	2 cut(s)	887, 1009
RsaI	GTAC	5 cut(s)	353, 715, 775, 1029, 1064
RsaNI	GTAC	5 cut(s)	352, 714, 774, 1028, 1063
RseI	CAYNNNNRTG	1 cut(s)	864
Rsr2I	CGGWCCG	1 cut(s)	347
RsrII	CGGWCCG	1 cut(s)	347
SaqAI	TTAA	5 cut(s)	447, 572, 593, 906, 1092
SatI	GCNGC	5 cut(s)	189, 192, 513, 516, 650
Sau3AI	GATC	3 cut(s)	267, 340, 1019
Sau96I	GGNCC	3 cut(s)	347, 406, 836
ScrFI	CCNGG	2 cut(s)	548, 957
SduI	GDGCHC	2 cut(s)	72, 1155
SfaNI	GCATC	3 cut(s)	638, 709, 714
SfcI	CTRYAG	1 cut(s)	513
SinI	GGWCC	2 cut(s)	347, 836
SmiMI	CAYNNNNRTG	1 cut(s)	864
SmlI	CTYRAG	4 cut(s)	310, 370, 919, 1036
SmoI	CTYRAG	4 cut(s)	310, 370, 919, 1036
Sse9I	AATT	9 cut(s)	60, 109, 164, 282, 320, 452, 602, 640, 903
SsiI	CCGC	2 cut(s)	475, 941
StyD4I	CCNGG	2 cut(s)	546, 955
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	4 cut(s)	154, 351, 472, 778
TaiI	ACGT	2 cut(s)	974, 1064
TaqI	TCGA	2 cut(s)	157, 1123
TasI	AATT	9 cut(s)	60, 109, 164, 282, 320, 452, 602, 640, 903
TatI	WGTACW	1 cut(s)	1027
TfiI	GAWTC	4 cut(s)	278, 316, 1054, 1078
Tru1I	TTAA	5 cut(s)	447, 572, 593, 906, 1092
Tru9I	TTAA	5 cut(s)	447, 572, 593, 906, 1092
TscAI	CASTG	1 cut(s)	477
TseFI	GTSAC	2 cut(s)	667, 827
TseI	GCWGC	5 cut(s)	188, 191, 512, 515, 649
Tsp45I	GTSAC	2 cut(s)	667, 827
TspDTI	ATGAA	7 cut(s)	98, 443, 554, 644, 951, 1091, 1146
TspGWI	ACGGA	1 cut(s)	266
TspRI	CASTG	1 cut(s)	477
Van91I	CCANNNNNTGG	1 cut(s)	877
VpaK11BI	GGWCC	2 cut(s)	347, 836
XapI	RAATTY	1 cut(s)	452
XceI	RCATGY	1 cut(s)	188
XcmI	CCANNNNNNNNNTGG	1 cut(s)	389
XmiI	GTMKAC	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.