Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000907.1

Orthogroup ID

OG0003161

Physical Location & Seq

Genomic Coordinates Forward (+)

160594 .. 160935

Gene Structure 342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000907.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

atgtttgatcccacaaagattggcacagtgaaacctccaagaaaagagaagctaacaaaggatgagaaagaggctgagctggaagccgctgttgaagttgccaaggacattgtcccgaagaagaaaacaaaggggaggagtaagccaagtaagatgaagaagaagaagcaggagataattgccaatgcgaagagacctttcttggaacaacaaatgaaaggggacgaacaaatgggtagaagaagcagaaaggaatggagcaggtggaactaccgacatctttgcagcggttttctcgcaagaaagcggctacatgattgtgctaatggagactgttattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005732 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BING4CT WD40

Protein Analysis

113

Amino Acids

13.22

Weight (kDa)

9.98

Isoelectric Point (pI)

51.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10530
fragaria_vesca	FvH4_7g06900 FvH4_7g06900
malus_domestica	MD07G1075700.v1.1 MD13G1165600.v1.1
prunus_persica	Prupe.2G096600_v2.0.a1 Prupe.2G096600_v2.0.a1
pyrus_communis	pycom02g20600 pycom07g05980 pycom13g14170
rosa_chinensis	RchiOBHm_Chr1g0336741 RchiOBHm_Chr1g0336801 RchiOBHm_Chr1g0336811 RchiOBHm_Chr1g0336821
rosa_laevigata	RLG00000029332 RLG00000029335 RLG00000029337
rosa_multiflora	Rmu_sc0000907.1_g000012 Rmu_sc0000907.1_g000017 Rmu_sc0000907.1_g000032 Rmu_sc0000907.1_g000033 Rmu_sc0011778.1_g000010
rosa_roxburghii	Rroxscaffold_4G00315350
rosa_rugosa	Rorug01G0127500 Rorug01G0127800 Rorug01G0127900
rosa_samantha	Rh1AG148700 Rh1AG148900 Rh1BG116800 Rh1BG116900 Rh1CG140100 Rh1DG155500 Rh1DG156000 Rh1DG156100 Rh5AG191600
rosa_wichuraiana	Rw1G012000 Rw1G012010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	252
Acc36I	ACCTGC	1 cut(s)	252
AciI	CCGC	3 cut(s)	87, 288, 307
AclWI	GGATC	1 cut(s)	2
AgsI	TTSAA	1 cut(s)	95
AluBI	AGCT	2 cut(s)	52, 79
AluI	AGCT	2 cut(s)	52, 79
Alw26I	GTCTC	2 cut(s)	187, 324
AlwI	GGATC	1 cut(s)	2
ApeKI	GCWGC	1 cut(s)	285
BbvI	GCAGC	1 cut(s)	297
BcgI	CGANNNNNNTGC	2 cut(s)	264, 298
BcoDI	GTCTC	2 cut(s)	187, 324
BfuAI	ACCTGC	1 cut(s)	252
BisI	GCNGC	3 cut(s)	87, 286, 308
BlpI	GCTNAGC	1 cut(s)	75
BlsI	GCNGC	3 cut(s)	88, 287, 309
Bpu1102I	GCTNAGC	1 cut(s)	75
BsaI	GGTCTC	1 cut(s)	187
BsaJI	CCNNGG	1 cut(s)	102
BseDI	CCNNGG	1 cut(s)	102
BseGI	GGATG	1 cut(s)	67
BseMII	CTCAG	1 cut(s)	66
BseRI	GAGGAG	1 cut(s)	151
BseXI	GCAGC	1 cut(s)	297
BslFI	GGGAC	2 cut(s)	98, 236
BsmAI	GTCTC	2 cut(s)	187, 324
BsmFI	GGGAC	2 cut(s)	98, 236
Bso31I	GGTCTC	1 cut(s)	187
Bsp143I	GATC	1 cut(s)	7
Bsp1720I	GCTNAGC	1 cut(s)	75
BspACI	CCGC	3 cut(s)	87, 288, 307
BspCNI	CTCAG	1 cut(s)	67
BspMI	ACCTGC	1 cut(s)	252
BspPI	GGATC	1 cut(s)	2
BspTNI	GGTCTC	1 cut(s)	187
BssECI	CCNNGG	1 cut(s)	102
BssMI	GATC	1 cut(s)	7
BssT1I	CCWWGG	1 cut(s)	102
Bst4CI	ACNGT	2 cut(s)	28, 335
Bst6I	CTCTTC	1 cut(s)	185
BstDEI	CTNAG	1 cut(s)	75
BstF5I	GGATG	1 cut(s)	67
BstKTI	GATC	1 cut(s)	10
BstMAI	GTCTC	2 cut(s)	187, 324
BstMBI	GATC	1 cut(s)	7
BstV1I	GCAGC	1 cut(s)	297
BtsCI	GGATG	1 cut(s)	67
BtsIMutI	CAGTG	1 cut(s)	33
BveI	ACCTGC	1 cut(s)	252
CspCI	CAANNNNNGTGG	1 cut(s)	36
CviAII	CATG	1 cut(s)	314
CviJI	RGCY	6 cut(s)	52, 74, 79, 86, 145, 310
CviKI_1	RGCY	6 cut(s)	52, 74, 79, 86, 145, 310
DdeI	CTNAG	1 cut(s)	75
DpnI	GATC	1 cut(s)	9
DpnII	GATC	1 cut(s)	7
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
Eco130I	CCWWGG	1 cut(s)	102
Eco31I	GGTCTC	1 cut(s)	187
EcoT14I	CCWWGG	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	102
FaeI	CATG	1 cut(s)	317
FaiI	YATR	1 cut(s)	315
FaqI	GGGAC	2 cut(s)	98, 236
FatI	CATG	1 cut(s)	313
Fnu4HI	GCNGC	3 cut(s)	87, 286, 308
FokI	GGATG	1 cut(s)	74
Fsp4HI	GCNGC	3 cut(s)	87, 286, 308
GluI	GCNGC	3 cut(s)	87, 286, 308
Hin1II	CATG	1 cut(s)	317
Hpy188III	TCNNGA	1 cut(s)	115
HpyCH4III	ACNGT	2 cut(s)	28, 335
HpyCH4V	TGCA	1 cut(s)	285
HpyF3I	CTNAG	1 cut(s)	75
Hsp92II	CATG	1 cut(s)	317
Kzo9I	GATC	1 cut(s)	7
LmnI	GCTCC	1 cut(s)	258
LpnPI	CCDG	3 cut(s)	65, 155, 247
Lsp1109I	GCAGC	1 cut(s)	297
MalI	GATC	1 cut(s)	9
MboI	GATC	1 cut(s)	7
MboII	GAAGA	7 cut(s)	130, 133, 169, 172, 175, 202, 252
MluCI	AATT	1 cut(s)	177
MnlI	CCTC	3 cut(s)	45, 64, 129
MseI	TTAA	1 cut(s)	340
MslI	CAYNNNNRTG	1 cut(s)	318
MspA1I	CMGCKG	2 cut(s)	89, 288
NdeII	GATC	1 cut(s)	7
NlaIII	CATG	1 cut(s)	317
PaqCI	CACCTGC	1 cut(s)	252
PflFI	GACNNNGTC	1 cut(s)	110
PkrI	GCNGC	3 cut(s)	88, 287, 309
PsyI	GACNNNGTC	1 cut(s)	110
RseI	CAYNNNNRTG	1 cut(s)	318
SaqAI	TTAA	1 cut(s)	340
SatI	GCNGC	3 cut(s)	87, 286, 308
Sau3AI	GATC	1 cut(s)	7
SetI	ASST	5 cut(s)	37, 54, 81, 199, 266
SmiMI	CAYNNNNRTG	1 cut(s)	318
Sse9I	AATT	1 cut(s)	177
SsiI	CCGC	3 cut(s)	87, 288, 307
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	2 cut(s)	28, 335
TasI	AATT	1 cut(s)	177
TauI	GCSGC	2 cut(s)	89, 310
Tru1I	TTAA	1 cut(s)	340
Tru9I	TTAA	1 cut(s)	340
TscAI	CASTG	1 cut(s)	33
TseI	GCWGC	1 cut(s)	285
TspDTI	ATGAA	2 cut(s)	170, 230
TspRI	CASTG	1 cut(s)	33
Tth111I	GACNNNGTC	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.