Rh5AG191600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0003161
Physical Location & Seq
Forward (+)
22117669 .. 22118507
839 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG191600.1

Sequence Viewer

Length: 333 bp
ATGGCTGTAATCAATGCTGTGAATAGTTTTCTGAAATGTTCAGTTGGGTCATTTGTAGGAGAGTTGTTTTCTGCTTTCTCAATGATGTACAAGAAAATTGGATGGGGTTTATTTGTACTTCAACGTTTGAGTGGCATATGGACTGATTGGCTAGTTGCTAATTTTCTTCTCAGGTCCTGTGATGTGGCATTCTTGCATGATGAGACAATGTTTACTGCAGCCCAAAAAAAGTATAGAACCGTGTGCTGTGGCACAACAGCTTCCCTCATGTTTTCTTCAGGATCCTGCTTTGCTATGGCCATGTTACTAAGTTACTTTATCTGTGGCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.21

Weight (kDa)

8.6

Isoelectric Point (pI)

23.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 124
AclWI GGATC 2 cut(s) 276, 289
AcoI YGGCCR 1 cut(s) 297
AcuI CTGAAG 1 cut(s) 261
AfaI GTAC 2 cut(s) 89, 117
AgsI TTSAA 1 cut(s) 122
AluBI AGCT 1 cut(s) 260
AluI AGCT 1 cut(s) 260
Alw26I GTCTC 1 cut(s) 197
AlwI GGATC 2 cut(s) 276, 289
AlwNI CAGNNNCTG 1 cut(s) 177
AoxI GGCC 1 cut(s) 297
ApeKI GCWGC 1 cut(s) 218
AspS9I GGNCC 1 cut(s) 174
AvaII GGWCC 1 cut(s) 174
BalI TGGCCA 1 cut(s) 299
BamHI GGATCC 1 cut(s) 281
BbvI GCAGC 1 cut(s) 230
BccI CCATC 1 cut(s) 96
BcoDI GTCTC 1 cut(s) 197
BfaI CTAG 1 cut(s) 152
BfmI CTRYAG 1 cut(s) 216
BisI GCNGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 220
Bme18I GGWCC 1 cut(s) 174
BmgT120I GGNCC 1 cut(s) 174
BmiI GGNNCC 1 cut(s) 283
BseGI GGATG 1 cut(s) 107
BseMII CTCAG 1 cut(s) 184
BseXI GCAGC 1 cut(s) 230
BshFI GGCC 1 cut(s) 299
BsmAI GTCTC 1 cut(s) 197
BsmI GAATGC 1 cut(s) 188
BsnI GGCC 1 cut(s) 299
Bsp1407I TGTACA 1 cut(s) 87
Bsp143I GATC 1 cut(s) 281
BspANI GGCC 1 cut(s) 299
BspCNI CTCAG 1 cut(s) 183
BspLI GGNNCC 1 cut(s) 283
BspMAI CTGCAG 1 cut(s) 220
BspPI GGATC 2 cut(s) 276, 289
BsrGI TGTACA 1 cut(s) 87
BssMI GATC 1 cut(s) 281
Bst4CI ACNGT 1 cut(s) 241
BstAUI TGTACA 1 cut(s) 87
BstDEI CTNAG 2 cut(s) 170, 308
BstF5I GGATG 1 cut(s) 107
BstKTI GATC 1 cut(s) 284
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 1 cut(s) 281
BstSFI CTRYAG 1 cut(s) 216
BstV1I GCAGC 1 cut(s) 230
BstX2I RGATCY 1 cut(s) 281
BstYI RGATCY 1 cut(s) 281
BsuRI GGCC 1 cut(s) 299
BtsCI GGATG 1 cut(s) 107
CaiI CAGNNNCTG 1 cut(s) 177
Cfr13I GGNCC 1 cut(s) 174
Csp6I GTAC 2 cut(s) 88, 116
CviAII CATG 3 cut(s) 197, 268, 301
CviJI RGCY 5 cut(s) 5, 151, 221, 260, 299
CviKI_1 RGCY 5 cut(s) 5, 151, 221, 260, 299
CviQI GTAC 2 cut(s) 88, 116
DdeI CTNAG 2 cut(s) 170, 308
DpnI GATC 1 cut(s) 283
DpnII GATC 1 cut(s) 281
EaeI YGGCCR 1 cut(s) 297
Eco47I GGWCC 1 cut(s) 174
Eco57I CTGAAG 1 cut(s) 261
EcoO109I RGGNCCY 1 cut(s) 174
FaeI CATG 3 cut(s) 200, 271, 304
FaiI YATR 7 cut(s) 137, 139, 198, 234, 269, 296, 302
FatI CATG 3 cut(s) 196, 267, 300
FauNDI CATATG 1 cut(s) 137
Fnu4HI GCNGC 1 cut(s) 219
FokI GGATG 1 cut(s) 114
Fsp4HI GCNGC 1 cut(s) 219
FspBI CTAG 1 cut(s) 152
GluI GCNGC 1 cut(s) 219
HaeIII GGCC 1 cut(s) 299
Hin1II CATG 3 cut(s) 200, 271, 304
Hpy166II GTNNAC 1 cut(s) 213
Hpy188I TCNGA 1 cut(s) 33
Hpy188III TCNNGA 1 cut(s) 279
Hpy8I GTNNAC 1 cut(s) 213
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4IV ACGT 1 cut(s) 124
HpyCH4V TGCA 2 cut(s) 196, 218
HpyF3I CTNAG 2 cut(s) 170, 308
HpySE526I ACGT 1 cut(s) 124
Hsp92II CATG 3 cut(s) 200, 271, 304
Kzo9I GATC 1 cut(s) 281
LpnPI CCDG 4 cut(s) 157, 190, 264, 298
Lsp1109I GCAGC 1 cut(s) 230
MaeI CTAG 1 cut(s) 152
MaeII ACGT 1 cut(s) 124
MaeIII GTNAC 2 cut(s) 303, 311
MalI GATC 1 cut(s) 283
MboI GATC 1 cut(s) 281
MboII GAAGA 2 cut(s) 158, 267
MflI RGATCY 1 cut(s) 281
MlsI TGGCCA 1 cut(s) 299
MluCI AATT 2 cut(s) 96, 160
MluNI TGGCCA 1 cut(s) 299
MnlI CCTC 1 cut(s) 275
Mox20I TGGCCA 1 cut(s) 299
MscI TGGCCA 1 cut(s) 299
Msp20I TGGCCA 1 cut(s) 299
Mva1269I GAATGC 1 cut(s) 188
NdeI CATATG 1 cut(s) 137
NdeII GATC 1 cut(s) 281
NlaIII CATG 3 cut(s) 200, 271, 304
NlaIV GGNNCC 1 cut(s) 283
PctI GAATGC 1 cut(s) 188
PkrI GCNGC 1 cut(s) 220
PpuMI RGGWCCY 1 cut(s) 174
Psp1406I AACGTT 1 cut(s) 124
Psp5II RGGWCCY 1 cut(s) 174
PspN4I GGNNCC 1 cut(s) 283
PspPI GGNCC 1 cut(s) 174
PspPPI RGGWCCY 1 cut(s) 174
PstI CTGCAG 1 cut(s) 220
PstNI CAGNNNCTG 1 cut(s) 177
PsuI RGATCY 1 cut(s) 281
RsaI GTAC 2 cut(s) 89, 117
RsaNI GTAC 2 cut(s) 88, 116
SatI GCNGC 1 cut(s) 219
Sau3AI GATC 1 cut(s) 281
Sau96I GGNCC 1 cut(s) 174
SetI ASST 3 cut(s) 127, 176, 262
SfcI CTRYAG 1 cut(s) 216
SinI GGWCC 1 cut(s) 174
Sse9I AATT 2 cut(s) 96, 160
SspMI CTAG 1 cut(s) 152
TaaI ACNGT 1 cut(s) 241
TaiI ACGT 1 cut(s) 127
TasI AATT 2 cut(s) 96, 160
TatI WGTACW 2 cut(s) 87, 115
TseI GCWGC 1 cut(s) 218
VpaK11BI GGWCC 1 cut(s) 174
XspI CTAG 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.