Rh1DG156100

U3 small nucleolar RNA-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0003161
Physical Location & Seq
Forward (+)
32487201 .. 32487503
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG156100.1

Sequence Viewer

Length: 303 bp
ATGTGGTGTACTACAAGCTCTTCTGCTGTTATTGAGATGCTGTGCCACAAGAGGCCCATCTCGGCCATAGCTTTCCACCCTAGTAATCGTGATCTCATGGCCACATCTGGGAAAGAGAAAAAAGTTAAGCTTTGGGACATGAGGAATCCTAAGTGGCCACTCCAAATGTTACCAGGTCAGGCAGAGACTGGATTTCAGTCAAAAGGGTCGGCTCGCTCGTGGAACTGGGTCTTTTCTACAGGTTCTGAGAGATTCTTCTGGGACTCAAAAGTACGAGAAATATATGACTCATCCATTAGTTAA

Protein Analysis

100

Amino Acids

11.5

Weight (kDa)

9.56

Isoelectric Point (pI)

56.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_THOC3 PF25174 10 - 51 7.4e-08 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 3 cut(s) 63, 99, 155
AfaI GTAC 2 cut(s) 10, 273
AfiI CCNNNNNNNGG 1 cut(s) 108
AjnI CCWGG 1 cut(s) 172
AluBI AGCT 3 cut(s) 18, 71, 130
AluI AGCT 3 cut(s) 18, 71, 130
Alw26I GTCTC 1 cut(s) 179
AlwNI CAGNNNCTG 2 cut(s) 188, 245
AoxI GGCC 4 cut(s) 53, 63, 99, 155
AspS9I GGNCC 1 cut(s) 54
BalI TGGCCA 2 cut(s) 101, 157
BauI CACGAG 1 cut(s) 217
BccI CCATC 1 cut(s) 65
BciT130I CCWGG 1 cut(s) 174
BcoDI GTCTC 1 cut(s) 179
BfaI CTAG 1 cut(s) 81
BfmI CTRYAG 1 cut(s) 237
Bme1390I CCNGG 1 cut(s) 174
BmgT120I GGNCC 1 cut(s) 54
BmrFI CCNGG 1 cut(s) 174
BmrI ACTGGG 1 cut(s) 235
BmsI GCATC 1 cut(s) 27
BmuI ACTGGG 1 cut(s) 235
Bsc4I CCNNNNNNNGG 1 cut(s) 108
Bse1I ACTGG 2 cut(s) 193, 230
BseBI CCWGG 1 cut(s) 174
BseGI GGATG 1 cut(s) 290
BseLI CCNNNNNNNGG 1 cut(s) 108
BseMII CTCAG 1 cut(s) 237
BseNI ACTGG 2 cut(s) 193, 230
BshFI GGCC 4 cut(s) 55, 65, 101, 157
BslFI GGGAC 2 cut(s) 149, 275
BslI CCNNNNNNNGG 1 cut(s) 108
BsmAI GTCTC 1 cut(s) 179
BsmFI GGGAC 2 cut(s) 149, 275
BsnI GGCC 4 cut(s) 55, 65, 101, 157
Bsp143I GATC 1 cut(s) 91
BspANI GGCC 4 cut(s) 55, 65, 101, 157
BspCNI CTCAG 1 cut(s) 238
BspQI GCTCTTC 1 cut(s) 25
BsrI ACTGG 2 cut(s) 193, 230
BssMI GATC 1 cut(s) 91
BssSI CACGAG 1 cut(s) 217
Bst2BI CACGAG 1 cut(s) 217
Bst2UI CCWGG 1 cut(s) 174
Bst6I CTCTTC 1 cut(s) 25
BstC8I GCNNGC 1 cut(s) 214
BstDEI CTNAG 2 cut(s) 150, 246
BstF5I GGATG 1 cut(s) 290
BstKTI GATC 1 cut(s) 94
BstMAI GTCTC 1 cut(s) 179
BstMBI GATC 1 cut(s) 91
BstNI CCWGG 1 cut(s) 174
BstSCI CCNGG 1 cut(s) 172
BstSFI CTRYAG 1 cut(s) 237
BsuRI GGCC 4 cut(s) 55, 65, 101, 157
BtsCI GGATG 1 cut(s) 290
Cac8I GCNNGC 1 cut(s) 214
CaiI CAGNNNCTG 2 cut(s) 188, 245
Cfr13I GGNCC 1 cut(s) 54
CsiI ACCWGGT 1 cut(s) 172
Csp6I GTAC 2 cut(s) 9, 272
CviAII CATG 2 cut(s) 97, 139
CviJI RGCY 8 cut(s) 18, 55, 65, 71, 101, 130, 157, 212
CviKI_1 RGCY 8 cut(s) 18, 55, 65, 71, 101, 130, 157, 212
CviQI GTAC 2 cut(s) 9, 272
DdeI CTNAG 2 cut(s) 150, 246
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
EaeI YGGCCR 3 cut(s) 63, 99, 155
Eam1104I CTCTTC 1 cut(s) 25
EarI CTCTTC 1 cut(s) 25
EcoRII CCWGG 1 cut(s) 172
FaeI CATG 2 cut(s) 100, 142
FaiI YATR 5 cut(s) 68, 98, 140, 283, 285
FalI AAGNNNNNCTT 2 cut(s) 114, 146
FaqI GGGAC 2 cut(s) 149, 275
FatI CATG 2 cut(s) 96, 138
FokI GGATG 1 cut(s) 277
FspBI CTAG 1 cut(s) 81
HaeIII GGCC 4 cut(s) 55, 65, 101, 157
Hin1II CATG 2 cut(s) 100, 142
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 4 cut(s) 145, 252, 263, 287
Hpy166II GTNNAC 1 cut(s) 9
Hpy188I TCNGA 1 cut(s) 247
Hpy188III TCNNGA 1 cut(s) 89
Hpy8I GTNNAC 1 cut(s) 9
HpyF3I CTNAG 2 cut(s) 150, 246
Hsp92II CATG 2 cut(s) 100, 142
Kzo9I GATC 1 cut(s) 91
LguI GCTCTTC 1 cut(s) 25
LpnPI CCDG 8 cut(s) 93, 159, 164, 174, 186, 211, 225, 244
LweI GCATC 1 cut(s) 27
MabI ACCWGGT 1 cut(s) 172
MaeI CTAG 1 cut(s) 81
MaeIII GTNAC 1 cut(s) 168
MalI GATC 1 cut(s) 93
MboI GATC 1 cut(s) 91
MboII GAAGA 2 cut(s) 12, 247
MlsI TGGCCA 2 cut(s) 101, 157
MluNI TGGCCA 2 cut(s) 101, 157
MlyI GAGTC 2 cut(s) 257, 281
MnlI CCTC 2 cut(s) 45, 135
Mox20I TGGCCA 2 cut(s) 101, 157
MscI TGGCCA 2 cut(s) 101, 157
MseI TTAA 2 cut(s) 126, 301
Msp20I TGGCCA 2 cut(s) 101, 157
MspR9I CCNGG 1 cut(s) 174
MvaI CCWGG 1 cut(s) 174
NdeII GATC 1 cut(s) 91
NlaIII CATG 2 cut(s) 100, 142
NmeAIII GCCGAG 1 cut(s) 41
PciSI GCTCTTC 1 cut(s) 25
PcsI WCGNNNNNNNCGW 1 cut(s) 215
PfeI GAWTC 2 cut(s) 145, 252
PleI GAGTC 2 cut(s) 257, 281
PpsI GAGTC 2 cut(s) 257, 281
Psp6I CCWGG 1 cut(s) 172
PspGI CCWGG 1 cut(s) 172
PspPI GGNCC 1 cut(s) 54
PstNI CAGNNNCTG 2 cut(s) 188, 245
RsaI GTAC 2 cut(s) 10, 273
RsaNI GTAC 2 cut(s) 9, 272
SapI GCTCTTC 1 cut(s) 25
SaqAI TTAA 2 cut(s) 126, 301
Sau3AI GATC 1 cut(s) 91
Sau96I GGNCC 1 cut(s) 54
SchI GAGTC 2 cut(s) 257, 281
ScrFI CCNGG 1 cut(s) 174
SetI ASST 5 cut(s) 20, 73, 132, 178, 244
SexAI ACCWGGT 1 cut(s) 172
SfaNI GCATC 1 cut(s) 27
SfcI CTRYAG 1 cut(s) 237
SspMI CTAG 1 cut(s) 81
StyD4I CCNGG 1 cut(s) 172
TatI WGTACW 1 cut(s) 8
TfiI GAWTC 2 cut(s) 145, 252
Tru1I TTAA 2 cut(s) 126, 301
Tru9I TTAA 2 cut(s) 126, 301
XspI CTAG 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.