Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003161

Physical Location & Seq

Genomic Coordinates Reverse (-)

32342574 .. 32348156

Gene Structure 5583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG155500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1608 bp

ATGGGTGTGAATCCAGGCCATGGGGCTATTGTGCCTCCAACAGAACAGAAGCTCTCGGATGAGATGGATGTTACGAAGAAGAAGTATCTTAGAGGTGGAGAAGCTAATTTGGAGGTATTGAAAGATAAAAAGTTGAAGGGTCAACTAGCTGTTAGAGAAGCATTACATCTGAAAACAGCACAAGCTGCTGCCAGCTCTGAGAAGTACCTTCTGCCAAGTGAAGAAGGTTATTTGGAGCCTGAAGGCTTAGAGAAGACATGGAGGATCAAACAAGACTCAATAGCCCCTGCAGTAGATATCTTAAGCGCAAGGAATCAATACGATATTGTTGTACCAGATCTCGGTCCGTACAGGCTGGATTTCACGCCAAGTGGTCGATACATGATGGTCGGTGGACACAAGGGCCATCTAGCTATTGTAGACATGAAGCAAATGAGCCTGATCAAAGAATTTCAGGTTAGGGAGACAGTTCGTGATGTGGTATTCTTGCATGATGAGACGATGTTTGCTGCAGCCCAGAAAAAGTATCCATATATTTATAATAGGGATGGCACTGAACTTCACTGCTTAAAGGAACATGGTGCAGCTTTAAGGCTTCGTTATCTTGAACAACACCGACTATTGGCATCAATAAATGAATATGGTCAGCTTCATTATCAGGATGTAACAGATGGTCGGATGATAGGTAGTTACAGGACAGGCTTTGGCCGTACTGATGTGATGCAGGTAAACCGTCACAATGCACTTCTTGCTTTGGGTCATTCAGGTGGTAAAGTTACCATGTGGAGTCCTACAAGCTCTTCTGCTGTTATTGAGATGCTGTGCCACAAGGGGCCCATCTCGGCCATAGCTTTCCACCCTACTAATCGTGATCTCATGGCGACATCTGGGAAAGAGAAAAAAGTTAAGCTTTGGGACATGAGGAATCTTAAGGGGCCACTCCAAACGTTACCAGGTCAGGCAGAGACTCTGGATTTCAGTCAAAAGGGTCTGCTCGCTCGTGGAACTGGGTCTTTTCTAGAGGTCCTGAGAGATTCTTCTGGGATTCAGAAGTATGAGAAATATATGACTCATCCATTAGTTAAAGGTTACCAAATAGAAAAGGTGTTGTTTCGACCGTATGAAGATGTTTTATGCATAGGGCACTCCATGGGGTGGTCTAGTATTCTGATTCCTGGTTCTGGGAATCCCAATTTTGATACATGGGTGGCGAATCCATTTGAAACACCTAAACAGAGAAGAGAGAGGGAAGTGCACTCTCTACTTGATAAGCTCCCACCTGAGACGATTATGTTTGATCCCACAAAGATTGGCACAGTGAAACCTCCAAGGAAAGAGAAGCCAACAAAGGAGGAGAAAGAGGCTGAGCTGGAAGCCGCTCTTGAAGTTGCCAAGGACATTGTCCCGAAGAAGAAAACAAAGGGGAGGAGTAAGCCAAGTAAGATGAAGAAGAAGAAGCAGGAGATAATTGCCAATGCCAAGAGACCATTCTTGGAACAACAAATGAAAGAGGATGAACAAATGGCTAGAAAGAAGCAGAAAGGAATGGAGCAAGTGGAACTGCCAACATCTTTGCAGAGGTTTGCTCGCAAGAAAGCAGCTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005732 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BING4CT WD40

Protein Analysis

535

Amino Acids

60.44

Weight (kDa)

9.44

Isoelectric Point (pI)

33.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_Prp19	PF24814	119 - 330	6.1e-14	Prp19 WD40 domain
Beta-prop_EML_2	PF23414	119 - 229	6.8e-06	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR5	PF25175	119 - 311	3.1e-09	WDR5 beta-propeller domain
WD40_CDC20-Fz	PF24807	168 - 383	2.2e-11	CDC20/Fizzy WD40 domain
Beta-prop_THOC3	PF25174	182 - 348	3.1e-12	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	224 - 312	1.6e-08	WDR3 first beta-propeller domain
BING4CT	PF08149	354 - 433	2.5e-33	BING4CT (NUC141) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10530
fragaria_vesca	FvH4_7g06900 FvH4_7g06900
malus_domestica	MD07G1075700.v1.1 MD13G1165600.v1.1
prunus_persica	Prupe.2G096600_v2.0.a1 Prupe.2G096600_v2.0.a1
pyrus_communis	pycom02g20600 pycom07g05980 pycom13g14170
rosa_chinensis	RchiOBHm_Chr1g0336741 RchiOBHm_Chr1g0336801 RchiOBHm_Chr1g0336811 RchiOBHm_Chr1g0336821
rosa_laevigata	RLG00000029332 RLG00000029335 RLG00000029337
rosa_multiflora	Rmu_sc0000907.1_g000012 Rmu_sc0000907.1_g000017 Rmu_sc0000907.1_g000032 Rmu_sc0000907.1_g000033 Rmu_sc0011778.1_g000010
rosa_roxburghii	Rroxscaffold_4G00315350
rosa_rugosa	Rorug01G0127500 Rorug01G0127800 Rorug01G0127900
rosa_samantha	Rh1AG148700 Rh1AG148900 Rh1BG116800 Rh1BG116900 Rh1CG140100 Rh1DG155500 Rh1DG156000 Rh1DG156100 Rh5AG191600
rosa_wichuraiana	Rw1G012000 Rw1G012010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	540
Acc36I	ACCTGC	1 cut(s)	715
AccB7I	CCANNNNNTGG	2 cut(s)	20, 1155
AccBSI	CCGCTC	1 cut(s)	1379
AccI	GTMKAC	1 cut(s)	420
AciI	CCGC	1 cut(s)	1377
AclI	AACGTT	1 cut(s)	947
AclWI	GGATC	2 cut(s)	272, 1292
AcoI	YGGCCR	2 cut(s)	706, 843
AcsI	RAATTY	1 cut(s)	449
AcuI	CTGAAG	1 cut(s)	261
AfaI	GTAC	4 cut(s)	206, 333, 350, 712
AfiI	CCNNNNNNNGG	5 cut(s)	20, 341, 622, 1155, 1181
AflII	CTTAAG	2 cut(s)	301, 929
AgsI	TTSAA	5 cut(s)	121, 136, 608, 1223, 1385
AjnI	CCWGG	3 cut(s)	13, 952, 1174
AjuI	GAANNNNNNNTTGG	2 cut(s)	1472, 1504
Alw21I	GWGCWC	1 cut(s)	1257
Alw26I	GTCTC	5 cut(s)	458, 491, 959, 1277, 1477
Alw44I	GTGCAC	1 cut(s)	1253
AlwI	GGATC	2 cut(s)	272, 1292
AoxI	GGCC	6 cut(s)	16, 403, 706, 833, 843, 935
ApaI	GGGCCC	1 cut(s)	837
ApaLI	GTGCAC	1 cut(s)	1253
ApeKI	GCWGC	6 cut(s)	185, 188, 509, 512, 584, 1598
ApoI	RAATTY	1 cut(s)	449
AspLEI	GCGC	1 cut(s)	308
AspS9I	GGNCC	6 cut(s)	344, 403, 833, 834, 935, 1024
AvaII	GGWCC	2 cut(s)	344, 1024
BaeGI	GKGCMC	3 cut(s)	837, 1146, 1257
BaeI	ACNNNNGTAYC	2 cut(s)	1191, 1224
BanII	GRGCYC	1 cut(s)	837
BauI	CACGAG	1 cut(s)	999
BbsI	GAAGAC	1 cut(s)	260
Bbv12I	GWGCWC	1 cut(s)	1257
BbvI	GCAGC	5 cut(s)	172, 175, 496, 524, 596
BccI	CCATC	6 cut(s)	58, 379, 414, 542, 665, 845
BceAI	ACGGC	1 cut(s)	693
BciT130I	CCWGG	3 cut(s)	15, 954, 1176
BciVI	GTATCC	1 cut(s)	537
BclI	TGATCA	1 cut(s)	441
BcoDI	GTCTC	5 cut(s)	458, 491, 959, 1277, 1477
BfaI	CTAG	5 cut(s)	146, 410, 1019, 1161, 1527
BfmI	CTRYAG	2 cut(s)	288, 510
BfrI	CTTAAG	2 cut(s)	301, 929
BfuAI	ACCTGC	1 cut(s)	715
BfuI	GTATCC	1 cut(s)	537
BglII	AGATCT	1 cut(s)	337
BisI	GCNGC	7 cut(s)	186, 189, 510, 513, 585, 1377, 1599
BlpI	GCTNAGC	1 cut(s)	1365
BlsI	GCNGC	7 cut(s)	187, 190, 511, 514, 586, 1378, 1600
Bme1390I	CCNGG	3 cut(s)	15, 954, 1176
Bme18I	GGWCC	2 cut(s)	344, 1024
BmgT120I	GGNCC	6 cut(s)	344, 403, 833, 834, 935, 1024
BmiI	GGNNCC	4 cut(s)	237, 834, 835, 936
BmrFI	CCNGG	3 cut(s)	15, 954, 1176
BmrI	ACTGGG	1 cut(s)	1017
BmsI	GCATC	3 cut(s)	635, 711, 807
BmuI	ACTGGG	1 cut(s)	1017
BpiI	GAAGAC	1 cut(s)	260
BplI	GAGNNNNNCTC	2 cut(s)	1570, 1602
Bpu1102I	GCTNAGC	1 cut(s)	1365
BsaI	GGTCTC	1 cut(s)	1477
BsaJI	CCNNGG	4 cut(s)	19, 1149, 1328, 1392
Bsc4I	CCNNNNNNNGG	5 cut(s)	20, 341, 622, 1155, 1181
Bse1I	ACTGG	1 cut(s)	1012
BseBI	CCWGG	3 cut(s)	15, 954, 1176
BseDI	CCNNGG	4 cut(s)	19, 1149, 1328, 1392
BseGI	GGATG	7 cut(s)	64, 73, 553, 667, 684, 1072, 1519
BseLI	CCNNNNNNNGG	5 cut(s)	20, 341, 622, 1155, 1181
BseMII	CTCAG	4 cut(s)	189, 1019, 1272, 1356
BseNI	ACTGG	1 cut(s)	1012
BseRI	GAGGAG	2 cut(s)	1367, 1441
BseSI	GKGCMC	3 cut(s)	837, 1146, 1257
BseXI	GCAGC	5 cut(s)	172, 175, 496, 524, 596
BsgI	GTGCAG	1 cut(s)	603
Bsh1285I	CGRYCG	1 cut(s)	1118
BshFI	GGCC	6 cut(s)	18, 405, 708, 835, 845, 937
BsiEI	CGRYCG	1 cut(s)	1118
BsiHKAI	GWGCWC	1 cut(s)	1257
BslFI	GGGAC	2 cut(s)	929, 1388
BslI	CCNNNNNNNGG	5 cut(s)	20, 341, 622, 1155, 1181
BsmAI	GTCTC	5 cut(s)	458, 491, 959, 1277, 1477
BsmBI	CGTCTC	2 cut(s)	491, 1277
BsmFI	GGGAC	2 cut(s)	929, 1388
BsnI	GGCC	6 cut(s)	18, 405, 708, 835, 845, 937
Bso31I	GGTCTC	1 cut(s)	1477
Bsp120I	GGGCCC	1 cut(s)	833
Bsp1286I	GDGCHC	3 cut(s)	837, 1146, 1257
Bsp143I	GATC	5 cut(s)	264, 337, 441, 871, 1297
Bsp1720I	GCTNAGC	1 cut(s)	1365
Bsp19I	CCATGG	2 cut(s)	19, 1149
BspACI	CCGC	1 cut(s)	1377
BspANI	GGCC	6 cut(s)	18, 405, 708, 835, 845, 937
BspCNI	CTCAG	4 cut(s)	190, 1020, 1273, 1357
BspLI	GGNNCC	4 cut(s)	237, 834, 835, 936
BspMAI	CTGCAG	2 cut(s)	292, 514
BspMI	ACCTGC	1 cut(s)	715
BspPI	GGATC	2 cut(s)	272, 1292
BspQI	GCTCTTC	1 cut(s)	805
BspTI	CTTAAG	2 cut(s)	301, 929
BspTNI	GGTCTC	1 cut(s)	1477
BsrBI	CCGCTC	1 cut(s)	1379
BsrI	ACTGG	1 cut(s)	1012
BssECI	CCNNGG	4 cut(s)	19, 1149, 1328, 1392
BssMI	GATC	5 cut(s)	264, 337, 441, 871, 1297
BssSI	CACGAG	1 cut(s)	999
BssT1I	CCWWGG	4 cut(s)	19, 1149, 1328, 1392
Bst2BI	CACGAG	1 cut(s)	999
Bst2UI	CCWGG	3 cut(s)	15, 954, 1176
Bst4CI	ACNGT	4 cut(s)	469, 734, 1119, 1318
Bst6I	CTCTTC	2 cut(s)	805, 1234
BstAFI	CTTAAG	2 cut(s)	301, 929
BstAPI	GCANNNNNTGC	2 cut(s)	185, 749
BstC8I	GCNNGC	3 cut(s)	193, 996, 1588
BstDEI	CTNAG	6 cut(s)	89, 198, 247, 1028, 1281, 1365
BstDSI	CCRYGG	2 cut(s)	19, 1149
BstEII	GGTNACC	1 cut(s)	1088
BstF5I	GGATG	7 cut(s)	64, 73, 553, 667, 684, 1072, 1519
BstHHI	GCGC	1 cut(s)	308
BstKTI	GATC	5 cut(s)	267, 340, 444, 874, 1300
BstMAI	GTCTC	5 cut(s)	458, 491, 959, 1277, 1477
BstMBI	GATC	5 cut(s)	264, 337, 441, 871, 1297
BstMCI	CGRYCG	1 cut(s)	1118
BstMWI	GCNNNNNNNGC	2 cut(s)	185, 749
BstNI	CCWGG	3 cut(s)	15, 954, 1176
BstPI	GGTNACC	1 cut(s)	1088
BstSCI	CCNGG	3 cut(s)	13, 952, 1174
BstSFI	CTRYAG	2 cut(s)	288, 510
BstSLI	GKGCMC	3 cut(s)	837, 1146, 1257
BstV1I	GCAGC	5 cut(s)	172, 175, 496, 524, 596
BstV2I	GAAGAC	1 cut(s)	260
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
BsuI	GTATCC	1 cut(s)	537
BsuRI	GGCC	6 cut(s)	18, 405, 708, 835, 845, 937
BtgI	CCRYGG	2 cut(s)	19, 1149
BtsCI	GGATG	7 cut(s)	64, 73, 553, 667, 684, 1072, 1519
BtsI	GCAGTG	1 cut(s)	562
BtsIMutI	CAGTG	3 cut(s)	552, 562, 1323
BveI	ACCTGC	1 cut(s)	715
Cac8I	GCNNGC	3 cut(s)	193, 996, 1588
CfoI	GCGC	1 cut(s)	308
Cfr13I	GGNCC	6 cut(s)	344, 403, 833, 834, 935, 1024
CpoI	CGGWCCG	1 cut(s)	344
CsiI	ACCWGGT	1 cut(s)	952
Csp6I	GTAC	4 cut(s)	205, 332, 349, 711
CspCI	CAANNNNNGTGG	2 cut(s)	1291, 1326
CspI	CGGWCCG	1 cut(s)	344
CviQI	GTAC	4 cut(s)	205, 332, 349, 711
DdeI	CTNAG	6 cut(s)	89, 198, 247, 1028, 1281, 1365
DpnI	GATC	5 cut(s)	266, 339, 443, 873, 1299
DpnII	GATC	5 cut(s)	264, 337, 441, 871, 1297
EaeI	YGGCCR	2 cut(s)	706, 843
Eam1104I	CTCTTC	2 cut(s)	805, 1234
EarI	CTCTTC	2 cut(s)	805, 1234
Eco130I	CCWWGG	4 cut(s)	19, 1149, 1328, 1392
Eco24I	GRGCYC	1 cut(s)	837
Eco31I	GGTCTC	1 cut(s)	1477
Eco32I	GATATC	1 cut(s)	298
Eco47I	GGWCC	2 cut(s)	344, 1024
Eco57I	CTGAAG	1 cut(s)	261
Eco91I	GGTNACC	1 cut(s)	1088
EcoO109I	RGGNCCY	2 cut(s)	833, 1024
EcoO65I	GGTNACC	1 cut(s)	1088
EcoRII	CCWGG	3 cut(s)	13, 952, 1174
EcoRV	GATATC	1 cut(s)	298
EcoT14I	CCWWGG	4 cut(s)	19, 1149, 1328, 1392
EcoT22I	ATGCAT	1 cut(s)	1139
EcoT38I	GRGCYC	1 cut(s)	837
ErhI	CCWWGG	4 cut(s)	19, 1149, 1328, 1392
Esp3I	CGTCTC	2 cut(s)	491, 1277
FalI	AAGNNNNNCTT	4 cut(s)	894, 926, 1365, 1397
FaqI	GGGAC	2 cut(s)	929, 1388
FbaI	TGATCA	1 cut(s)	441
FblI	GTMKAC	1 cut(s)	420
Fnu4HI	GCNGC	7 cut(s)	186, 189, 510, 513, 585, 1377, 1599
FokI	GGATG	7 cut(s)	71, 80, 560, 674, 691, 1059, 1526
FriOI	GRGCYC	1 cut(s)	837
Fsp4HI	GCNGC	7 cut(s)	186, 189, 510, 513, 585, 1377, 1599
FspBI	CTAG	5 cut(s)	146, 410, 1019, 1161, 1527
GlaI	GCGC	1 cut(s)	307
GluI	GCNGC	7 cut(s)	186, 189, 510, 513, 585, 1377, 1599
HaeIII	GGCC	6 cut(s)	18, 405, 708, 835, 845, 937
HhaI	GCGC	1 cut(s)	308
Hin6I	GCGC	1 cut(s)	306
HinP1I	GCGC	1 cut(s)	306
HincII	GTYRAC	1 cut(s)	143
HindII	GTYRAC	1 cut(s)	143
HindIII	AAGCTT	1 cut(s)	908
Hpy166II	GTNNAC	5 cut(s)	143, 395, 421, 730, 1255
Hpy188I	TCNGA	6 cut(s)	58, 171, 199, 678, 1050, 1170
Hpy188III	TCNNGA	9 cut(s)	473, 605, 659, 869, 971, 1019, 1027, 1382, 1405
Hpy8I	GTNNAC	5 cut(s)	143, 395, 421, 730, 1255
HpyAV	CCTTC	4 cut(s)	130, 218, 218, 236
HpyCH4III	ACNGT	4 cut(s)	469, 734, 1119, 1318
HpyCH4IV	ACGT	1 cut(s)	947
HpyCH4V	TGCA	9 cut(s)	290, 490, 512, 584, 724, 743, 1137, 1255, 1576
HpyF10VI	GCNNNNNNNGC	2 cut(s)	185, 749
HpyF3I	CTNAG	6 cut(s)	89, 198, 247, 1028, 1281, 1365
HpySE526I	ACGT	1 cut(s)	947
HspAI	GCGC	1 cut(s)	306
Ksp22I	TGATCA	1 cut(s)	441
Kzo9I	GATC	5 cut(s)	264, 337, 441, 871, 1297
LguI	GCTCTTC	1 cut(s)	805
LmnI	GCTCC	3 cut(s)	235, 1278, 1549
Lsp1109I	GCAGC	5 cut(s)	172, 175, 496, 524, 596
LweI	GCATC	3 cut(s)	635, 711, 807
MabI	ACCWGGT	1 cut(s)	952
MaeI	CTAG	5 cut(s)	146, 410, 1019, 1161, 1527
MaeII	ACGT	1 cut(s)	947
MaeIII	GTNAC	7 cut(s)	70, 664, 689, 734, 775, 948, 1088
MalI	GATC	5 cut(s)	266, 339, 443, 873, 1299
MbiI	CCGCTC	1 cut(s)	1379
MboI	GATC	5 cut(s)	264, 337, 441, 871, 1297
MflI	RGATCY	1 cut(s)	337
MhlI	GDGCHC	3 cut(s)	837, 1146, 1257
MluCI	AATT	4 cut(s)	106, 449, 1192, 1467
MlyI	GAGTC	4 cut(s)	269, 796, 961, 1063
MmeI	TCCRAC	2 cut(s)	62, 656
Mph1103I	ATGCAT	1 cut(s)	1139
MseI	TTAA	6 cut(s)	302, 569, 590, 906, 930, 1083
MslI	CAYNNNNRTG	1 cut(s)	765
MspCI	CTTAAG	2 cut(s)	301, 929
MspR9I	CCNGG	3 cut(s)	15, 954, 1176
MvaI	CCWGG	3 cut(s)	15, 954, 1176
MwoI	GCNNNNNNNGC	2 cut(s)	185, 749
NcoI	CCATGG	2 cut(s)	19, 1149
NdeII	GATC	5 cut(s)	264, 337, 441, 871, 1297
NlaIV	GGNNCC	4 cut(s)	237, 834, 835, 936
NmeAIII	GCCGAG	1 cut(s)	821
NmuCI	GTSAC	1 cut(s)	734
NsiI	ATGCAT	1 cut(s)	1139
PciSI	GCTCTTC	1 cut(s)	805
PfeI	GAWTC	8 cut(s)	10, 313, 925, 1034, 1045, 1171, 1186, 1213
PflFI	GACNNNGTC	1 cut(s)	1400
PflMI	CCANNNNNTGG	2 cut(s)	20, 1155
PkrI	GCNGC	7 cut(s)	187, 190, 511, 514, 586, 1378, 1600
PleI	GAGTC	4 cut(s)	269, 795, 961, 1063
PpsI	GAGTC	4 cut(s)	269, 795, 961, 1063
PpuMI	RGGWCCY	1 cut(s)	1024
PsiI	TTATAA	1 cut(s)	540
Psp1406I	AACGTT	1 cut(s)	947
Psp5II	RGGWCCY	1 cut(s)	1024
Psp6I	CCWGG	3 cut(s)	13, 952, 1174
PspEI	GGTNACC	1 cut(s)	1088
PspGI	CCWGG	3 cut(s)	13, 952, 1174
PspN4I	GGNNCC	4 cut(s)	237, 834, 835, 936
PspOMI	GGGCCC	1 cut(s)	833
PspPI	GGNCC	6 cut(s)	344, 403, 833, 834, 935, 1024
PspPPI	RGGWCCY	1 cut(s)	1024
PstI	CTGCAG	2 cut(s)	292, 514
PsuI	RGATCY	1 cut(s)	337
PsyI	GACNNNGTC	1 cut(s)	1400
RsaI	GTAC	4 cut(s)	206, 333, 350, 712
RsaNI	GTAC	4 cut(s)	205, 332, 349, 711
RseI	CAYNNNNRTG	1 cut(s)	765
Rsr2I	CGGWCCG	1 cut(s)	344
RsrII	CGGWCCG	1 cut(s)	344
SapI	GCTCTTC	1 cut(s)	805
SaqAI	TTAA	6 cut(s)	302, 569, 590, 906, 930, 1083
SatI	GCNGC	7 cut(s)	186, 189, 510, 513, 585, 1377, 1599
Sau3AI	GATC	5 cut(s)	264, 337, 441, 871, 1297
Sau96I	GGNCC	6 cut(s)	344, 403, 833, 834, 935, 1024
SchI	GAGTC	4 cut(s)	269, 796, 961, 1063
ScrFI	CCNGG	3 cut(s)	15, 954, 1176
SduI	GDGCHC	3 cut(s)	837, 1146, 1257
SexAI	ACCWGGT	1 cut(s)	952
SfaNI	GCATC	3 cut(s)	635, 711, 807
SfcI	CTRYAG	2 cut(s)	288, 510
SinI	GGWCC	2 cut(s)	344, 1024
SmiMI	CAYNNNNRTG	1 cut(s)	765
SmlI	CTYRAG	2 cut(s)	301, 929
SmoI	CTYRAG	2 cut(s)	301, 929
Sse9I	AATT	4 cut(s)	106, 449, 1192, 1467
SsiI	CCGC	1 cut(s)	1377
SspMI	CTAG	5 cut(s)	146, 410, 1019, 1161, 1527
StyD4I	CCNGG	3 cut(s)	13, 952, 1174
StyI	CCWWGG	4 cut(s)	19, 1149, 1328, 1392
TaaI	ACNGT	4 cut(s)	469, 734, 1119, 1318
TaiI	ACGT	1 cut(s)	950
TaqI	TCGA	2 cut(s)	376, 1114
TaqII	GACCGA	1 cut(s)	332
TasI	AATT	4 cut(s)	106, 449, 1192, 1467
TauI	GCSGC	1 cut(s)	1379
TfiI	GAWTC	8 cut(s)	10, 313, 925, 1034, 1045, 1171, 1186, 1213
Tru1I	TTAA	6 cut(s)	302, 569, 590, 906, 930, 1083
Tru9I	TTAA	6 cut(s)	302, 569, 590, 906, 930, 1083
TscAI	CASTG	3 cut(s)	559, 569, 1323
TseFI	GTSAC	1 cut(s)	734
TseI	GCWGC	6 cut(s)	185, 188, 509, 512, 584, 1598
Tsp45I	GTSAC	1 cut(s)	734
TspDTI	ATGAA	7 cut(s)	440, 641, 651, 1137, 1460, 1520, 1530
TspGWI	ACGGA	1 cut(s)	336
TspRI	CASTG	3 cut(s)	559, 569, 1323
Tth111I	GACNNNGTC	1 cut(s)	1400
Van91I	CCANNNNNTGG	2 cut(s)	20, 1155
Vha464I	CTTAAG	2 cut(s)	301, 929
VneI	GTGCAC	1 cut(s)	1253
VpaK11BI	GGWCC	2 cut(s)	344, 1024
XapI	RAATTY	1 cut(s)	449
XbaI	TCTAGA	1 cut(s)	1018
XmiI	GTMKAC	1 cut(s)	420
XspI	CTAG	5 cut(s)	146, 410, 1019, 1161, 1527
Zsp2I	ATGCAT	1 cut(s)	1139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.