Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003161

Physical Location & Seq

Genomic Coordinates Reverse (-)

36682979 .. 36683793

Gene Structure 815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029335

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGTGGAGTCCTACAAGCTCTTCTGCTGTTATTGAGATGCTGTGCCACAAGGGGCCCATCTCGGCCATAGCTTTCCACCCTAGTAATCGTGATCTCATGGCCCCATCTGGGAAAGAGAAAAAAGTTAAGCTTTGGGACAAGAGGAATCTTAAGTGGCCACTCCAAACGTTACCAGGTCAGGCAGAGACTCTGGATTTCAGTCAAAAGGGTCTGCTCGCTCGTGGAACTGGGTCTTTTCTACAGGTTCTGAGAGATTCTTCTGGGACTCAGAAGTACGAGAAATATATGAATCAAAAGCTCCCACCTGAGACAATTATGTTTGATCCCACAAAGATTGGCACAGTGAAACCTCCAAGAAAAGAGAAGCCAACAAAGGAGGAGAAAGAGGCTGAGCTGGAAGCCGCTGTTGAAGTTGCCAAGGACATTGTCCCAAAGAATAAAACCAAGGGGAGGAGTAAGCCAAGTAAGATGAAGAAGAAGAAGCAGGAGATAATTGCCAATGCGAAGAGACCTTTCTTGGAACAACAAATGAAAGGGGATGAACAAATGGCTAGAAAGAAGCAGAAAGGAATGGAGCAAGTGGAACTACCAACATCTTTGCAGCGGTTTTCTCGCAAGAAAGTGGCTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005732 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BING4CT WD40

Protein Analysis

211

Amino Acids

23.8

Weight (kDa)

10.0

Isoelectric Point (pI)

50.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_THOC3	PF25174	2 - 67	3e-06	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10530
fragaria_vesca	FvH4_7g06900 FvH4_7g06900
malus_domestica	MD07G1075700.v1.1 MD13G1165600.v1.1
prunus_persica	Prupe.2G096600_v2.0.a1 Prupe.2G096600_v2.0.a1
pyrus_communis	pycom02g20600 pycom07g05980 pycom13g14170
rosa_chinensis	RchiOBHm_Chr1g0336741 RchiOBHm_Chr1g0336801 RchiOBHm_Chr1g0336811 RchiOBHm_Chr1g0336821
rosa_laevigata	RLG00000029332 RLG00000029335 RLG00000029337
rosa_multiflora	Rmu_sc0000907.1_g000012 Rmu_sc0000907.1_g000017 Rmu_sc0000907.1_g000032 Rmu_sc0000907.1_g000033 Rmu_sc0011778.1_g000010
rosa_roxburghii	Rroxscaffold_4G00315350
rosa_rugosa	Rorug01G0127500 Rorug01G0127800 Rorug01G0127900
rosa_samantha	Rh1AG148700 Rh1AG148900 Rh1BG116800 Rh1BG116900 Rh1CG140100 Rh1DG155500 Rh1DG156000 Rh1DG156100 Rh5AG191600
rosa_wichuraiana	Rw1G012000 Rw1G012010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	402, 604
AclI	AACGTT	1 cut(s)	167
AclWI	GGATC	1 cut(s)	317
AcoI	YGGCCR	2 cut(s)	63, 155
AfaI	GTAC	1 cut(s)	275
AfiI	CCNNNNNNNGG	2 cut(s)	108, 450
AflII	CTTAAG	1 cut(s)	149
AgsI	TTSAA	1 cut(s)	410
AjnI	CCWGG	1 cut(s)	172
AluBI	AGCT	5 cut(s)	18, 71, 130, 298, 394
AluI	AGCT	5 cut(s)	18, 71, 130, 298, 394
Alw26I	GTCTC	3 cut(s)	179, 302, 502
AlwI	GGATC	1 cut(s)	317
AlwNI	CAGNNNCTG	1 cut(s)	247
AoxI	GGCC	4 cut(s)	53, 63, 99, 155
ApaI	GGGCCC	1 cut(s)	57
ApeKI	GCWGC	1 cut(s)	601
AspS9I	GGNCC	3 cut(s)	53, 54, 100
BaeGI	GKGCMC	1 cut(s)	57
BalI	TGGCCA	1 cut(s)	157
BanII	GRGCYC	1 cut(s)	57
BauI	CACGAG	1 cut(s)	219
BbvI	GCAGC	1 cut(s)	613
BccI	CCATC	2 cut(s)	65, 112
BciT130I	CCWGG	1 cut(s)	174
BcoDI	GTCTC	3 cut(s)	179, 302, 502
BfaI	CTAG	2 cut(s)	81, 552
BfmI	CTRYAG	1 cut(s)	239
BfrI	CTTAAG	1 cut(s)	149
BisI	GCNGC	2 cut(s)	402, 602
BlpI	GCTNAGC	1 cut(s)	390
BlsI	GCNGC	2 cut(s)	403, 603
Bme1390I	CCNGG	1 cut(s)	174
BmgT120I	GGNCC	3 cut(s)	53, 54, 100
BmiI	GGNNCC	3 cut(s)	54, 55, 102
BmrFI	CCNGG	1 cut(s)	174
BmrI	ACTGGG	1 cut(s)	237
BmsI	GCATC	1 cut(s)	27
BmuI	ACTGGG	1 cut(s)	237
Bpu1102I	GCTNAGC	1 cut(s)	390
BsaI	GGTCTC	1 cut(s)	502
BsaJI	CCNNGG	2 cut(s)	417, 444
Bsc4I	CCNNNNNNNGG	2 cut(s)	108, 450
Bse1I	ACTGG	1 cut(s)	232
BseBI	CCWGG	1 cut(s)	174
BseDI	CCNNGG	2 cut(s)	417, 444
BseGI	GGATG	1 cut(s)	544
BseLI	CCNNNNNNNGG	2 cut(s)	108, 450
BseMII	CTCAG	4 cut(s)	239, 281, 297, 381
BseNI	ACTGG	1 cut(s)	232
BseRI	GAGGAG	2 cut(s)	392, 466
BseSI	GKGCMC	1 cut(s)	57
BseXI	GCAGC	1 cut(s)	613
BshFI	GGCC	4 cut(s)	55, 65, 101, 157
BslFI	GGGAC	3 cut(s)	149, 277, 413
BslI	CCNNNNNNNGG	2 cut(s)	108, 450
BsmAI	GTCTC	3 cut(s)	179, 302, 502
BsmFI	GGGAC	3 cut(s)	149, 277, 413
BsnI	GGCC	4 cut(s)	55, 65, 101, 157
Bso31I	GGTCTC	1 cut(s)	502
Bsp120I	GGGCCC	1 cut(s)	53
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp143I	GATC	2 cut(s)	91, 322
Bsp1720I	GCTNAGC	1 cut(s)	390
BspACI	CCGC	2 cut(s)	402, 604
BspANI	GGCC	4 cut(s)	55, 65, 101, 157
BspCNI	CTCAG	4 cut(s)	240, 280, 298, 382
BspLI	GGNNCC	3 cut(s)	54, 55, 102
BspPI	GGATC	1 cut(s)	317
BspQI	GCTCTTC	1 cut(s)	25
BspTI	CTTAAG	1 cut(s)	149
BspTNI	GGTCTC	1 cut(s)	502
BsrI	ACTGG	1 cut(s)	232
BssECI	CCNNGG	2 cut(s)	417, 444
BssMI	GATC	2 cut(s)	91, 322
BssSI	CACGAG	1 cut(s)	219
BssT1I	CCWWGG	2 cut(s)	417, 444
Bst2BI	CACGAG	1 cut(s)	219
Bst2UI	CCWGG	1 cut(s)	174
Bst4CI	ACNGT	1 cut(s)	343
Bst6I	CTCTTC	2 cut(s)	25, 500
BstAFI	CTTAAG	1 cut(s)	149
BstC8I	GCNNGC	1 cut(s)	216
BstDEI	CTNAG	4 cut(s)	248, 267, 306, 390
BstF5I	GGATG	1 cut(s)	544
BstKTI	GATC	2 cut(s)	94, 325
BstMAI	GTCTC	3 cut(s)	179, 302, 502
BstMBI	GATC	2 cut(s)	91, 322
BstNI	CCWGG	1 cut(s)	174
BstSCI	CCNGG	1 cut(s)	172
BstSFI	CTRYAG	1 cut(s)	239
BstSLI	GKGCMC	1 cut(s)	57
BstV1I	GCAGC	1 cut(s)	613
BsuRI	GGCC	4 cut(s)	55, 65, 101, 157
BtsCI	GGATG	1 cut(s)	544
BtsIMutI	CAGTG	1 cut(s)	348
Cac8I	GCNNGC	1 cut(s)	216
CaiI	CAGNNNCTG	1 cut(s)	247
Cfr13I	GGNCC	3 cut(s)	53, 54, 100
CsiI	ACCWGGT	1 cut(s)	172
Csp6I	GTAC	1 cut(s)	274
CspCI	CAANNNNNGTGG	2 cut(s)	316, 351
CviAII	CATG	2 cut(s)	97, 630
CviQI	GTAC	1 cut(s)	274
DdeI	CTNAG	4 cut(s)	248, 267, 306, 390
DpnI	GATC	2 cut(s)	93, 324
DpnII	GATC	2 cut(s)	91, 322
EaeI	YGGCCR	2 cut(s)	63, 155
Eam1104I	CTCTTC	2 cut(s)	25, 500
EarI	CTCTTC	2 cut(s)	25, 500
Eco130I	CCWWGG	2 cut(s)	417, 444
Eco24I	GRGCYC	1 cut(s)	57
Eco31I	GGTCTC	1 cut(s)	502
EcoO109I	RGGNCCY	1 cut(s)	53
EcoRII	CCWGG	1 cut(s)	172
EcoT14I	CCWWGG	2 cut(s)	417, 444
EcoT38I	GRGCYC	1 cut(s)	57
ErhI	CCWWGG	2 cut(s)	417, 444
FaeI	CATG	2 cut(s)	100, 633
FaiI	YATR	6 cut(s)	68, 98, 285, 287, 317, 631
FalI	AAGNNNNNCTT	2 cut(s)	114, 146
FaqI	GGGAC	3 cut(s)	149, 277, 413
FatI	CATG	2 cut(s)	96, 629
Fnu4HI	GCNGC	2 cut(s)	402, 602
FokI	GGATG	1 cut(s)	551
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	2 cut(s)	402, 602
FspBI	CTAG	2 cut(s)	81, 552
GluI	GCNGC	2 cut(s)	402, 602
HaeIII	GGCC	4 cut(s)	55, 65, 101, 157
Hin1II	CATG	2 cut(s)	100, 633
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	6 cut(s)	7, 145, 187, 254, 265, 289
Hpy188I	TCNGA	2 cut(s)	249, 270
Hpy188III	TCNNGA	2 cut(s)	89, 191
HpyCH4III	ACNGT	1 cut(s)	343
HpyCH4IV	ACGT	1 cut(s)	167
HpyCH4V	TGCA	1 cut(s)	601
HpyF3I	CTNAG	4 cut(s)	248, 267, 306, 390
HpySE526I	ACGT	1 cut(s)	167
Hsp92II	CATG	2 cut(s)	100, 633
Kzo9I	GATC	2 cut(s)	91, 322
LguI	GCTCTTC	1 cut(s)	25
LmnI	GCTCC	2 cut(s)	303, 574
Lsp1109I	GCAGC	1 cut(s)	613
LweI	GCATC	1 cut(s)	27
MabI	ACCWGGT	1 cut(s)	172
MaeI	CTAG	2 cut(s)	81, 552
MaeII	ACGT	1 cut(s)	167
MaeIII	GTNAC	1 cut(s)	168
MalI	GATC	2 cut(s)	93, 324
MboI	GATC	2 cut(s)	91, 322
MboII	GAAGA	6 cut(s)	12, 249, 484, 487, 490, 517
MhlI	GDGCHC	1 cut(s)	57
MlsI	TGGCCA	1 cut(s)	157
MluCI	AATT	2 cut(s)	312, 492
MluNI	TGGCCA	1 cut(s)	157
MlyI	GAGTC	3 cut(s)	16, 181, 259
MnlI	CCTC	5 cut(s)	135, 360, 370, 379, 444
Mox20I	TGGCCA	1 cut(s)	157
MscI	TGGCCA	1 cut(s)	157
MseI	TTAA	2 cut(s)	126, 150
Msp20I	TGGCCA	1 cut(s)	157
MspA1I	CMGCKG	2 cut(s)	404, 604
MspCI	CTTAAG	1 cut(s)	149
MspR9I	CCNGG	1 cut(s)	174
MvaI	CCWGG	1 cut(s)	174
NdeII	GATC	2 cut(s)	91, 322
NlaIII	CATG	2 cut(s)	100, 633
NlaIV	GGNNCC	3 cut(s)	54, 55, 102
NmeAIII	GCCGAG	1 cut(s)	41
PciSI	GCTCTTC	1 cut(s)	25
PfeI	GAWTC	3 cut(s)	145, 254, 289
PflFI	GACNNNGTC	1 cut(s)	425
PkrI	GCNGC	2 cut(s)	403, 603
PleI	GAGTC	3 cut(s)	15, 181, 259
PpsI	GAGTC	3 cut(s)	15, 181, 259
Psp1406I	AACGTT	1 cut(s)	167
Psp6I	CCWGG	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	172
PspN4I	GGNNCC	3 cut(s)	54, 55, 102
PspOMI	GGGCCC	1 cut(s)	53
PspPI	GGNCC	3 cut(s)	53, 54, 100
PstNI	CAGNNNCTG	1 cut(s)	247
PsyI	GACNNNGTC	1 cut(s)	425
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
SapI	GCTCTTC	1 cut(s)	25
SaqAI	TTAA	2 cut(s)	126, 150
SatI	GCNGC	2 cut(s)	402, 602
Sau3AI	GATC	2 cut(s)	91, 322
Sau96I	GGNCC	3 cut(s)	53, 54, 100
SchI	GAGTC	3 cut(s)	16, 181, 259
ScrFI	CCNGG	1 cut(s)	174
SduI	GDGCHC	1 cut(s)	57
SexAI	ACCWGGT	1 cut(s)	172
SfaNI	GCATC	1 cut(s)	27
SfcI	CTRYAG	1 cut(s)	239
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse9I	AATT	2 cut(s)	312, 492
SsiI	CCGC	2 cut(s)	402, 604
SspMI	CTAG	2 cut(s)	81, 552
StyD4I	CCNGG	1 cut(s)	172
StyI	CCWWGG	2 cut(s)	417, 444
TaaI	ACNGT	1 cut(s)	343
TaiI	ACGT	1 cut(s)	170
TasI	AATT	2 cut(s)	312, 492
TauI	GCSGC	1 cut(s)	404
TfiI	GAWTC	3 cut(s)	145, 254, 289
Tru1I	TTAA	2 cut(s)	126, 150
Tru9I	TTAA	2 cut(s)	126, 150
TscAI	CASTG	1 cut(s)	348
TseI	GCWGC	1 cut(s)	601
TspDTI	ATGAA	4 cut(s)	302, 485, 545, 555
TspRI	CASTG	1 cut(s)	348
Tth111I	GACNNNGTC	1 cut(s)	425
Vha464I	CTTAAG	1 cut(s)	149
XspI	CTAG	2 cut(s)	81, 552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.