Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003161

Physical Location & Seq

Genomic Coordinates Reverse (-)

36706337 .. 36713108

Gene Structure 6772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029337

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2271 bp

ATGGGTGTGAATCCAGGCCATGGGGCTGTTGTGCCTCCAACAGAACAGAAGCTCACTGACGAGGTGGATGTTACGAAGAAGAAGTATCTTAGAGGTGGAGAAGCTAATCTGGAGGTATTGAAAGATAAAAAGTTGAAGGGTCAACTAGCTGTTAGAGAAGCATTACATCTGAAAACAGCACAAGCTGCTGCCAATGCTGAGAAGTACCTTCTGCCAAGTGAAGAAGGTTATTTGGAGCCTGAAGGCTTAGAGAAGACATGGAGGATCAAACAAGACTCAATAGCCCCTGCAGTAGATATCTTAAGCGCAAGGAATCAATACGATATTGTTGTACCAGATCTCGGTCCATACAGGCTGGATTTCACGCCAAGTGGTCGATACATGATGGTCGGTGGACACAAGGGCCATCTAGCTATTGTAGACATGAAGCAAATGAGCCTGATCAAAGAATTTCAGGTTAGGGAGACAGTTCGTGATGTGGTATTCTTGCATGATGAAACGATGTTTGCTGCAGCCCAGAAAAAGTATCCATATATTTATAATCGGGATGGCACTGAACTTCACTGCTTAAAGGAACATGGTGCAGCTTTAAGGCTTCGTTATCTTGAACAACACCGACTATTGGCATCAATAAATGAATATGGTCAGCTTCATTATCAGGATGTAACAGATGGTCGGATGATAGGTAGTTACAGGACAGGCTTTGGTCGTACTGATGTGATGCAGGTAAACCGCCACAATGCACTTCTTGCTTTGGGTCATTCAGGTGGTAAAGTTACCATGTGGAGTCCTACAAGCTCTTCTGCTGTTATTGAGATGCTGTGCCACAAGGGGCCCATCTCGGCCATAGCTTTCCACCCTACTAATTGTGATCTCATGGCCACATCTGGGAAAGAGAAAAAAGTTAAGCTTTGGGACATGAGGAATCTTAAGGGCCCACTCCAAACGTTACCAGGTCAGGCAGAGACTCTGGATTTCAGTCAAAAGGGTCTGCTTGCTCGTGGAACTGGGTCTTTTCTACAGGTTCTGAGAGATTCTTCTGGGACTCAGAAGTACGAGAAATATATGACTCATCCATTAGTTAAAGGTTACCAAATAGAAAAGGTGTTGTTTCGACCATATGAAGATGTTTTATGCATAGGACACTCCATGGGGTGGTCTAGTATTCTGATTCCTGGTTCTGGGAACCCCAATTTTGATACATGGGTGGCGAATCCATTTGAAACACCTAAACAGAGAAGAGAGAGGGAAGTGCACTCTCTACTTGATAAGCTCCCACCTGAGACAATTATGTTTGATCCCACAAAGATTGGCACAGTGAAACCTCCAAGGAAAGAGAAGCCAACAAAGGAGGAGAAACAGGCTGAGCTGGAAGACGCTGTTGAAGTTGCCAAGGACATTGTCCCGAAGAAGAAAACAAAAGGGAGGAGTAAGCCAAGTAAGATGAAGAAGAAGAAGCAGGAGATAATTGCCAATGCCAAGAGACCTTTCTTGGAACAACAAATGAAAGAGGATGAACAAATGGCCAGAAAGAAGCAGAAAGGAATGGAGCAAGTGGAACTACCAACATCTTTGCAGCGGTTTGCTCTTGCTGATAACATCAACCTTGTCTACTTGAAAAAAAGCTTGGTGCAGGAGTTAATCAAGCGGCAGCCTGATTGTTGGGAAAGCAAAACAGTCAGGAGTTTTGCGAGAGTCAAAACTGATCCGAGAGACTATTCTAGGCCAAATTCTCACCAACTTGCAGTAGTTCAAGGCATAAGTAAGAGGAGCTCAAACAGTGAATTTTTCTTGCAAGTGTTATCCAATTATGTGACCAGAGATATTCCGGTTTCTCATCTTTCAGATTGTGACTTCACCGAGGAGAAATGCGAGGATTTGCAACAAGATGTGGCGAACTGCCACTTGCTAAGAAGACCTACTGTTTTTGAGCTTGAACACAAGGCAAGAGTGCTGCTTGAAGACATAACCAAGCATTGGATTGCAAGAGAGTTGGTGAGGTTGCAGAACTGTATTGATTGGGCAAATGAGAAGGGACGGAGAGGTGAGTTATTTGTGTACTCGGGACCAAATAGAACTACTAAAGCAAGCATGCGAACAAGAGCGACTCTTCAAACAAGTGCCGGAGGTCATCGCAGAGGTTATAAGCTAGTCGTTGAGAAATTTTTATGGTCCTCTGATAGTTTCTTTCTTTTGCTGTCAACATATAAGCCAAATTGTAAAGTAGCTGAAATTGAGTTGCGAATCAGAGTTTACTTTTACTTCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005732 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BING4CT WD40

Protein Analysis

757

Amino Acids

86.26

Weight (kDa)

9.34

Isoelectric Point (pI)

39.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	119 - 311	3.1e-08	WDR5 beta-propeller domain
WD40_Prp19	PF24814	120 - 331	3.9e-14	Prp19 WD40 domain
WD40_CDC20-Fz	PF24807	168 - 385	3.6e-11	CDC20/Fizzy WD40 domain
Beta-prop_THOC3	PF25174	182 - 378	1.5e-11	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	222 - 312	4.7e-08	WDR3 first beta-propeller domain
BING4CT	PF08149	354 - 433	4.1e-33	BING4CT (NUC141) domain
Plus-3	PF03126	533 - 631	7.1e-08	Plus-3 domain
NERD_plant	PF25980	654 - 708	2.7e-16	Plant NERD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10530
fragaria_vesca	FvH4_7g06900 FvH4_7g06900
malus_domestica	MD07G1075700.v1.1 MD13G1165600.v1.1
prunus_persica	Prupe.2G096600_v2.0.a1 Prupe.2G096600_v2.0.a1
pyrus_communis	pycom02g20600 pycom07g05980 pycom13g14170
rosa_chinensis	RchiOBHm_Chr1g0336741 RchiOBHm_Chr1g0336801 RchiOBHm_Chr1g0336811 RchiOBHm_Chr1g0336821
rosa_laevigata	RLG00000029332 RLG00000029335 RLG00000029337
rosa_multiflora	Rmu_sc0000907.1_g000012 Rmu_sc0000907.1_g000017 Rmu_sc0000907.1_g000032 Rmu_sc0000907.1_g000033 Rmu_sc0011778.1_g000010
rosa_roxburghii	Rroxscaffold_4G00315350
rosa_rugosa	Rorug01G0127500 Rorug01G0127800 Rorug01G0127900
rosa_samantha	Rh1AG148700 Rh1AG148900 Rh1BG116800 Rh1BG116900 Rh1CG140100 Rh1DG155500 Rh1DG156000 Rh1DG156100 Rh5AG191600
rosa_wichuraiana	Rw1G012000 Rw1G012010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	540, 2145
Acc36I	ACCTGC	1 cut(s)	715
AccB7I	CCANNNNNTGG	3 cut(s)	20, 1155, 1977
AccI	GTMKAC	2 cut(s)	420, 1611
AciI	CCGC	3 cut(s)	733, 1579, 1648
AclI	AACGTT	1 cut(s)	947
AclWI	GGATC	3 cut(s)	272, 1292, 1700
AcoI	YGGCCR	3 cut(s)	843, 879, 1524
AcsI	RAATTY	4 cut(s)	449, 1729, 1784, 2162
AcuI	CTGAAG	1 cut(s)	261
AfaI	GTAC	5 cut(s)	206, 333, 712, 1055, 2060
AfiI	CCNNNNNNNGG	7 cut(s)	20, 341, 622, 888, 1155, 1181, 1977
AflII	CTTAAG	2 cut(s)	301, 929
AjnI	CCWGG	3 cut(s)	13, 952, 1174
AjuI	GAANNNNNNNTTGG	4 cut(s)	1472, 1504, 1610, 1642
Alw21I	GWGCWC	2 cut(s)	1257, 1775
Alw26I	GTCTC	5 cut(s)	458, 959, 1277, 1477, 1707
Alw44I	GTGCAC	1 cut(s)	1253
AlwI	GGATC	3 cut(s)	272, 1292, 1700
AlwNI	CAGNNNCTG	1 cut(s)	1027
Ama87I	CYCGRG	1 cut(s)	2062
AoxI	GGCC	8 cut(s)	16, 403, 833, 843, 879, 934, 1524, 1724
ApaI	GGGCCC	2 cut(s)	837, 938
ApaLI	GTGCAC	1 cut(s)	1253
ApeKI	GCWGC	8 cut(s)	185, 188, 509, 512, 584, 1576, 1651, 1954
ApoI	RAATTY	4 cut(s)	449, 1729, 1784, 2162
AspLEI	GCGC	1 cut(s)	308
AspS9I	GGNCC	8 cut(s)	344, 403, 833, 834, 934, 935, 2066, 2172
AsuHPI	GGTGA	4 cut(s)	1727, 1849, 2008, 2057
AvaI	CYCGRG	1 cut(s)	2062
AvaII	GGWCC	3 cut(s)	344, 2066, 2172
BaeGI	GKGCMC	3 cut(s)	837, 938, 1257
BaeI	ACNNNNGTAYC	2 cut(s)	1191, 1224
BalI	TGGCCA	2 cut(s)	881, 1526
BanII	GRGCYC	3 cut(s)	837, 938, 1775
BauI	CACGAG	1 cut(s)	999
BbsI	GAAGAC	4 cut(s)	260, 1380, 1921, 1968
Bbv12I	GWGCWC	2 cut(s)	1257, 1775
BbvI	GCAGC	8 cut(s)	172, 175, 496, 524, 596, 1588, 1663, 1941
BccI	CCATC	5 cut(s)	379, 414, 542, 665, 845
BciT130I	CCWGG	3 cut(s)	15, 954, 1176
BciVI	GTATCC	1 cut(s)	537
BclI	TGATCA	1 cut(s)	441
BcoDI	GTCTC	5 cut(s)	458, 959, 1277, 1477, 1707
BfaI	CTAG	5 cut(s)	146, 410, 1161, 1722, 2150
BfmI	CTRYAG	3 cut(s)	288, 510, 1019
BfrI	CTTAAG	2 cut(s)	301, 929
BfuAI	ACCTGC	1 cut(s)	715
BfuI	GTATCC	1 cut(s)	537
BglII	AGATCT	1 cut(s)	337
BisI	GCNGC	9 cut(s)	186, 189, 510, 513, 585, 1577, 1649, 1652, 1955
BlpI	GCTNAGC	1 cut(s)	1365
BlsI	GCNGC	9 cut(s)	187, 190, 511, 514, 586, 1578, 1650, 1653, 1956
Bme1390I	CCNGG	3 cut(s)	15, 954, 1176
Bme18I	GGWCC	3 cut(s)	344, 2066, 2172
BmeT110I	CYCGRG	1 cut(s)	2062
BmgT120I	GGNCC	8 cut(s)	344, 403, 833, 834, 934, 935, 2066, 2172
BmiI	GGNNCC	6 cut(s)	237, 834, 835, 936, 1187, 2067
BmrFI	CCNGG	3 cut(s)	15, 954, 1176
BmrI	ACTGGG	1 cut(s)	1017
BmsI	GCATC	3 cut(s)	635, 711, 807
BmuI	ACTGGG	1 cut(s)	1017
BpiI	GAAGAC	4 cut(s)	260, 1380, 1921, 1968
BpmI	CTGGAG	1 cut(s)	131
Bpu1102I	GCTNAGC	1 cut(s)	1365
BsaI	GGTCTC	1 cut(s)	1477
BsaJI	CCNNGG	5 cut(s)	19, 1149, 1328, 1392, 1860
BsaWI	WCCGGW	1 cut(s)	1828
Bsc4I	CCNNNNNNNGG	7 cut(s)	20, 341, 622, 888, 1155, 1181, 1977
Bse1I	ACTGG	1 cut(s)	1012
BseBI	CCWGG	3 cut(s)	15, 954, 1176
BseDI	CCNNGG	5 cut(s)	19, 1149, 1328, 1392, 1860
BseGI	GGATG	6 cut(s)	73, 553, 667, 684, 1072, 1519
BseLI	CCNNNNNNNGG	7 cut(s)	20, 341, 622, 888, 1155, 1181, 1977
BseMII	CTCAG	5 cut(s)	189, 1019, 1061, 1272, 1356
BseNI	ACTGG	1 cut(s)	1012
BseRI	GAGGAG	4 cut(s)	1367, 1441, 1783, 1877
BseSI	GKGCMC	3 cut(s)	837, 938, 1257
BseXI	GCAGC	8 cut(s)	172, 175, 496, 524, 596, 1588, 1663, 1941
BsgI	GTGCAG	2 cut(s)	603, 1652
BshFI	GGCC	8 cut(s)	18, 405, 835, 845, 881, 936, 1526, 1726
BsiHKAI	GWGCWC	2 cut(s)	1257, 1775
BsiHKCI	CYCGRG	1 cut(s)	2062
BsiSI	CCGG	2 cut(s)	1829, 2124
BslFI	GGGAC	5 cut(s)	929, 1057, 1388, 2049, 2079
BslI	CCNNNNNNNGG	7 cut(s)	20, 341, 622, 888, 1155, 1181, 1977
BsmAI	GTCTC	5 cut(s)	458, 959, 1277, 1477, 1707
BsmFI	GGGAC	5 cut(s)	929, 1057, 1388, 2049, 2079
BsnI	GGCC	8 cut(s)	18, 405, 835, 845, 881, 936, 1526, 1726
Bso31I	GGTCTC	1 cut(s)	1477
BsoBI	CYCGRG	1 cut(s)	2062
Bsp120I	GGGCCC	2 cut(s)	833, 934
Bsp1286I	GDGCHC	4 cut(s)	837, 938, 1257, 1775
Bsp143I	GATC	6 cut(s)	264, 337, 441, 871, 1297, 1705
Bsp1720I	GCTNAGC	1 cut(s)	1365
Bsp19I	CCATGG	2 cut(s)	19, 1149
BspACI	CCGC	3 cut(s)	733, 1579, 1648
BspANI	GGCC	8 cut(s)	18, 405, 835, 845, 881, 936, 1526, 1726
BspCNI	CTCAG	5 cut(s)	190, 1020, 1060, 1273, 1357
BspLI	GGNNCC	6 cut(s)	237, 834, 835, 936, 1187, 2067
BspMAI	CTGCAG	2 cut(s)	292, 514
BspMI	ACCTGC	1 cut(s)	715
BspPI	GGATC	3 cut(s)	272, 1292, 1700
BspQI	GCTCTTC	1 cut(s)	805
BspTI	CTTAAG	2 cut(s)	301, 929
BspTNI	GGTCTC	1 cut(s)	1477
BsrI	ACTGG	1 cut(s)	1012
BssECI	CCNNGG	5 cut(s)	19, 1149, 1328, 1392, 1860
BssMI	GATC	6 cut(s)	264, 337, 441, 871, 1297, 1705
BssSI	CACGAG	1 cut(s)	999
BssT1I	CCWWGG	4 cut(s)	19, 1149, 1328, 1392
Bst2BI	CACGAG	1 cut(s)	999
Bst2UI	CCWGG	3 cut(s)	15, 954, 1176
Bst4CI	ACNGT	6 cut(s)	469, 1318, 1678, 1781, 1924, 2012
Bst6I	CTCTTC	3 cut(s)	805, 1234, 2115
BstAFI	CTTAAG	2 cut(s)	301, 929
BstAPI	GCANNNNNTGC	2 cut(s)	185, 749
BstC8I	GCNNGC	3 cut(s)	996, 2089, 2093
BstDEI	CTNAG	8 cut(s)	89, 198, 247, 1028, 1047, 1281, 1365, 1910
BstDSI	CCRYGG	2 cut(s)	19, 1149
BstEII	GGTNACC	1 cut(s)	1088
BstF5I	GGATG	6 cut(s)	73, 553, 667, 684, 1072, 1519
BstHHI	GCGC	1 cut(s)	308
BstKTI	GATC	6 cut(s)	267, 340, 444, 874, 1300, 1708
BstMAI	GTCTC	5 cut(s)	458, 959, 1277, 1477, 1707
BstMBI	GATC	6 cut(s)	264, 337, 441, 871, 1297, 1705
BstMWI	GCNNNNNNNGC	3 cut(s)	185, 194, 749
BstNI	CCWGG	3 cut(s)	15, 954, 1176
BstNSI	RCATGY	1 cut(s)	2095
BstPI	GGTNACC	1 cut(s)	1088
BstSCI	CCNGG	3 cut(s)	13, 952, 1174
BstSFI	CTRYAG	3 cut(s)	288, 510, 1019
BstSLI	GKGCMC	3 cut(s)	837, 938, 1257
BstV1I	GCAGC	8 cut(s)	172, 175, 496, 524, 596, 1588, 1663, 1941
BstV2I	GAAGAC	4 cut(s)	260, 1380, 1921, 1968
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
BsuI	GTATCC	1 cut(s)	537
BsuRI	GGCC	8 cut(s)	18, 405, 835, 845, 881, 936, 1526, 1726
BtgI	CCRYGG	2 cut(s)	19, 1149
BtgZI	GCGATG	1 cut(s)	2117
BtsCI	GGATG	6 cut(s)	73, 553, 667, 684, 1072, 1519
BtsI	GCAGTG	1 cut(s)	562
BtsIMutI	CAGTG	5 cut(s)	54, 552, 562, 1323, 1786
BveI	ACCTGC	1 cut(s)	715
Cac8I	GCNNGC	3 cut(s)	996, 2089, 2093
CaiI	CAGNNNCTG	1 cut(s)	1027
CfoI	GCGC	1 cut(s)	308
Cfr13I	GGNCC	8 cut(s)	344, 403, 833, 834, 934, 935, 2066, 2172
CseI	GACGC	1 cut(s)	1385
CsiI	ACCWGGT	1 cut(s)	952
Csp6I	GTAC	5 cut(s)	205, 332, 711, 1054, 2059
CspCI	CAANNNNNGTGG	2 cut(s)	1291, 1326
CviQI	GTAC	5 cut(s)	205, 332, 711, 1054, 2059
DdeI	CTNAG	8 cut(s)	89, 198, 247, 1028, 1047, 1281, 1365, 1910
DpnI	GATC	6 cut(s)	266, 339, 443, 873, 1299, 1707
DpnII	GATC	6 cut(s)	264, 337, 441, 871, 1297, 1705
EaeI	YGGCCR	3 cut(s)	843, 879, 1524
Eam1104I	CTCTTC	3 cut(s)	805, 1234, 2115
EarI	CTCTTC	3 cut(s)	805, 1234, 2115
Ecl136II	GAGCTC	1 cut(s)	1773
Eco130I	CCWWGG	4 cut(s)	19, 1149, 1328, 1392
Eco24I	GRGCYC	3 cut(s)	837, 938, 1775
Eco31I	GGTCTC	1 cut(s)	1477
Eco32I	GATATC	1 cut(s)	298
Eco47I	GGWCC	3 cut(s)	344, 2066, 2172
Eco53kI	GAGCTC	1 cut(s)	1773
Eco57I	CTGAAG	1 cut(s)	261
Eco88I	CYCGRG	1 cut(s)	2062
Eco91I	GGTNACC	1 cut(s)	1088
EcoICRI	GAGCTC	1 cut(s)	1773
EcoO109I	RGGNCCY	2 cut(s)	833, 934
EcoO65I	GGTNACC	1 cut(s)	1088
EcoRII	CCWGG	3 cut(s)	13, 952, 1174
EcoRV	GATATC	1 cut(s)	298
EcoT14I	CCWWGG	4 cut(s)	19, 1149, 1328, 1392
EcoT22I	ATGCAT	1 cut(s)	1139
EcoT38I	GRGCYC	3 cut(s)	837, 938, 1775
ErhI	CCWWGG	4 cut(s)	19, 1149, 1328, 1392
FalI	AAGNNNNNCTT	2 cut(s)	894, 926
FaqI	GGGAC	5 cut(s)	929, 1057, 1388, 2049, 2079
FauNDI	CATATG	1 cut(s)	1120
FbaI	TGATCA	1 cut(s)	441
FblI	GTMKAC	2 cut(s)	420, 1611
Fnu4HI	GCNGC	9 cut(s)	186, 189, 510, 513, 585, 1577, 1649, 1652, 1955
FokI	GGATG	6 cut(s)	80, 560, 674, 691, 1059, 1526
FriOI	GRGCYC	3 cut(s)	837, 938, 1775
Fsp4HI	GCNGC	9 cut(s)	186, 189, 510, 513, 585, 1577, 1649, 1652, 1955
FspBI	CTAG	5 cut(s)	146, 410, 1161, 1722, 2150
GlaI	GCGC	1 cut(s)	307
GluI	GCNGC	9 cut(s)	186, 189, 510, 513, 585, 1577, 1649, 1652, 1955
GsuI	CTGGAG	1 cut(s)	131
HaeIII	GGCC	8 cut(s)	18, 405, 835, 845, 881, 936, 1526, 1726
HapII	CCGG	2 cut(s)	1829, 2124
HgaI	GACGC	1 cut(s)	1385
HhaI	GCGC	1 cut(s)	308
Hin6I	GCGC	1 cut(s)	306
HinP1I	GCGC	1 cut(s)	306
HincII	GTYRAC	2 cut(s)	143, 2202
HindII	GTYRAC	2 cut(s)	143, 2202
HindIII	AAGCTT	2 cut(s)	908, 1624
HpaII	CCGG	2 cut(s)	1829, 2124
HphI	GGTGA	4 cut(s)	1727, 1849, 2008, 2057
Hpy166II	GTNNAC	9 cut(s)	143, 395, 421, 730, 1255, 1612, 2059, 2202, 2254
Hpy188I	TCNGA	9 cut(s)	171, 678, 1029, 1050, 1170, 1710, 1846, 2179, 2249
Hpy188III	TCNNGA	9 cut(s)	110, 473, 545, 605, 659, 971, 1405, 1681, 2064
Hpy8I	GTNNAC	9 cut(s)	143, 395, 421, 730, 1255, 1612, 2059, 2202, 2254
HpyAV	CCTTC	5 cut(s)	130, 218, 218, 236, 2026
HpyCH4III	ACNGT	6 cut(s)	469, 1318, 1678, 1781, 1924, 2012
HpyCH4IV	ACGT	1 cut(s)	947
HpyF10VI	GCNNNNNNNGC	3 cut(s)	185, 194, 749
HpyF3I	CTNAG	8 cut(s)	89, 198, 247, 1028, 1047, 1281, 1365, 1910
HpySE526I	ACGT	1 cut(s)	947
HspAI	GCGC	1 cut(s)	306
Ksp22I	TGATCA	1 cut(s)	441
Kzo9I	GATC	6 cut(s)	264, 337, 441, 871, 1297, 1705
LguI	GCTCTTC	1 cut(s)	805
LmnI	GCTCC	4 cut(s)	235, 1278, 1549, 1770
Lsp1109I	GCAGC	8 cut(s)	172, 175, 496, 524, 596, 1588, 1663, 1941
LweI	GCATC	3 cut(s)	635, 711, 807
MabI	ACCWGGT	1 cut(s)	952
MaeI	CTAG	5 cut(s)	146, 410, 1161, 1722, 2150
MaeII	ACGT	1 cut(s)	947
MaeIII	GTNAC	8 cut(s)	70, 664, 689, 775, 948, 1088, 1813, 1850
MalI	GATC	6 cut(s)	266, 339, 443, 873, 1299, 1707
MboI	GATC	6 cut(s)	264, 337, 441, 871, 1297, 1705
MflI	RGATCY	1 cut(s)	337
MhlI	GDGCHC	4 cut(s)	837, 938, 1257, 1775
MlsI	TGGCCA	2 cut(s)	881, 1526
MluNI	TGGCCA	2 cut(s)	881, 1526
MlyI	GAGTC	7 cut(s)	269, 796, 961, 1039, 1063, 1704, 2101
MmeI	TCCRAC	2 cut(s)	62, 656
Mox20I	TGGCCA	2 cut(s)	881, 1526
Mph1103I	ATGCAT	1 cut(s)	1139
MscI	TGGCCA	2 cut(s)	881, 1526
MseI	TTAA	7 cut(s)	302, 569, 590, 906, 930, 1083, 1640
MslI	CAYNNNNRTG	1 cut(s)	765
Msp20I	TGGCCA	2 cut(s)	881, 1526
MspA1I	CMGCKG	1 cut(s)	1579
MspCI	CTTAAG	2 cut(s)	301, 929
MspI	CCGG	2 cut(s)	1829, 2124
MspR9I	CCNGG	3 cut(s)	15, 954, 1176
MvaI	CCWGG	3 cut(s)	15, 954, 1176
MwoI	GCNNNNNNNGC	3 cut(s)	185, 194, 749
NcoI	CCATGG	2 cut(s)	19, 1149
NdeI	CATATG	1 cut(s)	1120
NdeII	GATC	6 cut(s)	264, 337, 441, 871, 1297, 1705
NlaIV	GGNNCC	6 cut(s)	237, 834, 835, 936, 1187, 2067
NmeAIII	GCCGAG	1 cut(s)	821
NmuCI	GTSAC	2 cut(s)	1813, 1850
NsiI	ATGCAT	1 cut(s)	1139
NspI	RCATGY	1 cut(s)	2095
PaeI	GCATGC	1 cut(s)	2095
PciSI	GCTCTTC	1 cut(s)	805
PfeI	GAWTC	7 cut(s)	10, 313, 925, 1034, 1171, 1213, 2244
PflFI	GACNNNGTC	1 cut(s)	1400
PflMI	CCANNNNNTGG	3 cut(s)	20, 1155, 1977
PkrI	GCNGC	9 cut(s)	187, 190, 511, 514, 586, 1578, 1650, 1653, 1956
PleI	GAGTC	7 cut(s)	269, 795, 961, 1039, 1063, 1703, 2101
PpsI	GAGTC	7 cut(s)	269, 795, 961, 1039, 1063, 1703, 2101
PsiI	TTATAA	2 cut(s)	540, 2145
Psp124BI	GAGCTC	1 cut(s)	1775
Psp1406I	AACGTT	1 cut(s)	947
Psp6I	CCWGG	3 cut(s)	13, 952, 1174
PspEI	GGTNACC	1 cut(s)	1088
PspGI	CCWGG	3 cut(s)	13, 952, 1174
PspN4I	GGNNCC	6 cut(s)	237, 834, 835, 936, 1187, 2067
PspOMI	GGGCCC	2 cut(s)	833, 934
PspPI	GGNCC	8 cut(s)	344, 403, 833, 834, 934, 935, 2066, 2172
PstI	CTGCAG	2 cut(s)	292, 514
PstNI	CAGNNNCTG	1 cut(s)	1027
PsuI	RGATCY	1 cut(s)	337
PsyI	GACNNNGTC	1 cut(s)	1400
RsaI	GTAC	5 cut(s)	206, 333, 712, 1055, 2060
RsaNI	GTAC	5 cut(s)	205, 332, 711, 1054, 2059
RseI	CAYNNNNRTG	1 cut(s)	765
SacI	GAGCTC	1 cut(s)	1775
SapI	GCTCTTC	1 cut(s)	805
SaqAI	TTAA	7 cut(s)	302, 569, 590, 906, 930, 1083, 1640
SatI	GCNGC	9 cut(s)	186, 189, 510, 513, 585, 1577, 1649, 1652, 1955
Sau3AI	GATC	6 cut(s)	264, 337, 441, 871, 1297, 1705
Sau96I	GGNCC	8 cut(s)	344, 403, 833, 834, 934, 935, 2066, 2172
SchI	GAGTC	7 cut(s)	269, 796, 961, 1039, 1063, 1704, 2101
ScrFI	CCNGG	3 cut(s)	15, 954, 1176
SduI	GDGCHC	4 cut(s)	837, 938, 1257, 1775
SexAI	ACCWGGT	1 cut(s)	952
SfaNI	GCATC	3 cut(s)	635, 711, 807
SfcI	CTRYAG	3 cut(s)	288, 510, 1019
SinI	GGWCC	3 cut(s)	344, 2066, 2172
SmiMI	CAYNNNNRTG	1 cut(s)	765
SmlI	CTYRAG	2 cut(s)	301, 929
SmoI	CTYRAG	2 cut(s)	301, 929
SphI	GCATGC	1 cut(s)	2095
SsiI	CCGC	3 cut(s)	733, 1579, 1648
SspMI	CTAG	5 cut(s)	146, 410, 1161, 1722, 2150
SstI	GAGCTC	1 cut(s)	1775
StyD4I	CCNGG	3 cut(s)	13, 952, 1174
StyI	CCWWGG	4 cut(s)	19, 1149, 1328, 1392
TaaI	ACNGT	6 cut(s)	469, 1318, 1678, 1781, 1924, 2012
TaiI	ACGT	1 cut(s)	950
TaqI	TCGA	2 cut(s)	376, 1114
TaqII	GACCGA	1 cut(s)	332
TatI	WGTACW	1 cut(s)	2058
TauI	GCSGC	1 cut(s)	1651
TfiI	GAWTC	7 cut(s)	10, 313, 925, 1034, 1171, 1213, 2244
Tru1I	TTAA	7 cut(s)	302, 569, 590, 906, 930, 1083, 1640
Tru9I	TTAA	7 cut(s)	302, 569, 590, 906, 930, 1083, 1640
TscAI	CASTG	5 cut(s)	61, 559, 569, 1323, 1786
TseFI	GTSAC	2 cut(s)	1813, 1850
TseI	GCWGC	8 cut(s)	185, 188, 509, 512, 584, 1576, 1651, 1954
Tsp45I	GTSAC	2 cut(s)	1813, 1850
TspDTI	ATGAA	9 cut(s)	440, 510, 641, 651, 1137, 1460, 1520, 1530, 2254
TspGWI	ACGGA	1 cut(s)	2053
TspRI	CASTG	5 cut(s)	61, 559, 569, 1323, 1786
Tth111I	GACNNNGTC	1 cut(s)	1400
Van91I	CCANNNNNTGG	3 cut(s)	20, 1155, 1977
Vha464I	CTTAAG	2 cut(s)	301, 929
VneI	GTGCAC	1 cut(s)	1253
VpaK11BI	GGWCC	3 cut(s)	344, 2066, 2172
XapI	RAATTY	4 cut(s)	449, 1729, 1784, 2162
XceI	RCATGY	1 cut(s)	2095
XmiI	GTMKAC	2 cut(s)	420, 1611
XspI	CTAG	5 cut(s)	146, 410, 1161, 1722, 2150
Zsp2I	ATGCAT	1 cut(s)	1139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.