Rh1BG116800

U3 small nucleolar RNA-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0003161
Physical Location & Seq
Forward (+)
19822003 .. 20059587
237585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG116800.1

Sequence Viewer

Length: 1044 bp
ATGGGTGTGAAGGGTGTGAATCAAGGCCATGGGGCTGTTGTGCCTCCAACAGAACAGAAGCTCTCTGACGAGATGGATGTTACGAAGAAGAAGTATCTTAGAGGTGGAGAAGCTAATTTGGAGGTATTGAAAGATAAAAAGTTGAAGGGTCAACTAGCTGTTAGAGAAGCATTACATCTGAAAACAGCACAAGCTGCTGCCAGCGCTGAGAAGTACCTTCTGCCAAGTGAAGAAGGTTATTTGGAGCCTGAAGGCTTAGAGAAGACATGGAGGATCAAACAAGACTCAATAGCCCCTGCAGTAGATATCTTAAGCGCAAGGAATCAATACGATATTGTTGTACCAGATCTCGGTCCGTACAGGCTGGATTTCACGCCAAGTGGTCGATACATGATGGTCGGTGGACACAAGGGCCATCTAGCTATTGTAGACATGAAGCAAATGAGCCTGATCAAAGAATTTCAGGTTAGGGAGACAGTTCGTGATGTGGTATTCTTGCATGATGAGACGATGTTTGCTGCAGCCCAGAAAAAGTATCCATATATTTATAATCGGGATGGCACTGAACTTCACTGCTTAAAGGAACATGGTGCAGCTTTAAGGCTTTGTTATCTTGAACAACACCGACTATTGGCATCAATAAATGAATATGGTCAGCTTCATCATCAGGATGTCACAGATGGTCGGATGATAGGTGGTAAAGTTACCATGTGGAGTCCTACAAGCTCTTCTGCTGTTATTGAGATGCTGTGCCACAAGGGGCCCATCTCGGCCATAGCTTTCCACCCTAGTAATCGTGATCTCATGGCCACATCTGGGAAAGAGAAAAAAGTTAAGCTTTGGGACATGAGGAATCTTAAGTGGCCACTCCAAACGTTACCAGGTCAGGCAGAGACTCTGGATTTCAGTCAAAAGGGTCTGCTCGCTCGTGGAACTGGGTCTTTTCTACAGGTTCTGAGAGATTCTTCTGGGACTCAGAAGTACGAGAAATATATGACTCATCCATTAGTTAAAGGTTACCAAATAGAAAAGGTGTTGTTTTGA

Protein Analysis

347

Amino Acids

39.01

Weight (kDa)

8.94

Isoelectric Point (pI)

28.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_CDC20-Fz PF24807 122 - 285 2.3e-08 CDC20/Fizzy WD40 domain
Beta-prop_WDR5 PF25175 122 - 287 3.4e-06 WDR5 beta-propeller domain
WD40_Prp19 PF24814 233 - 307 1.7e-06 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 235 - 300 3.7e-08 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 549
AccI GTMKAC 1 cut(s) 429
AclI AACGTT 1 cut(s) 875
AclWI GGATC 1 cut(s) 281
AcoI YGGCCR 3 cut(s) 771, 807, 863
AcsI RAATTY 1 cut(s) 458
AcuI CTGAAG 1 cut(s) 270
AfaI GTAC 4 cut(s) 215, 342, 359, 983
AfeI AGCGCT 1 cut(s) 205
AfiI CCNNNNNNNGG 3 cut(s) 350, 631, 816
AflII CTTAAG 2 cut(s) 310, 857
AgsI TTSAA 3 cut(s) 130, 145, 617
AjnI CCWGG 1 cut(s) 880
Alw26I GTCTC 3 cut(s) 467, 500, 887
AlwI GGATC 1 cut(s) 281
AlwNI CAGNNNCTG 1 cut(s) 955
Aor51HI AGCGCT 1 cut(s) 205
AoxI GGCC 6 cut(s) 25, 412, 761, 771, 807, 863
ApaI GGGCCC 1 cut(s) 765
ApeKI GCWGC 5 cut(s) 194, 197, 518, 521, 593
ApoI RAATTY 1 cut(s) 458
AspLEI GCGC 2 cut(s) 206, 317
AspS9I GGNCC 4 cut(s) 353, 412, 761, 762
AvaII GGWCC 1 cut(s) 353
BaeGI GKGCMC 1 cut(s) 765
BalI TGGCCA 2 cut(s) 809, 865
BanII GRGCYC 1 cut(s) 765
BauI CACGAG 1 cut(s) 927
BbsI GAAGAC 1 cut(s) 269
BbvI GCAGC 5 cut(s) 181, 184, 505, 533, 605
BccI CCATC 6 cut(s) 67, 388, 423, 551, 674, 773
BciT130I CCWGG 1 cut(s) 882
BciVI GTATCC 1 cut(s) 546
BclI TGATCA 1 cut(s) 450
BcoDI GTCTC 3 cut(s) 467, 500, 887
BfaI CTAG 3 cut(s) 155, 419, 789
BfmI CTRYAG 3 cut(s) 297, 519, 947
BfoI RGCGCY 1 cut(s) 207
BfrI CTTAAG 2 cut(s) 310, 857
BfuI GTATCC 1 cut(s) 546
BglII AGATCT 1 cut(s) 346
BisI GCNGC 5 cut(s) 195, 198, 519, 522, 594
BlsI GCNGC 5 cut(s) 196, 199, 520, 523, 595
Bme1390I CCNGG 1 cut(s) 882
Bme18I GGWCC 1 cut(s) 353
BmgT120I GGNCC 4 cut(s) 353, 412, 761, 762
BmiI GGNNCC 3 cut(s) 246, 762, 763
BmrFI CCNGG 1 cut(s) 882
BmrI ACTGGG 1 cut(s) 945
BmsI GCATC 2 cut(s) 644, 735
BmuI ACTGGG 1 cut(s) 945
BpiI GAAGAC 1 cut(s) 269
BsaJI CCNNGG 1 cut(s) 28
Bsc4I CCNNNNNNNGG 3 cut(s) 350, 631, 816
Bse1I ACTGG 1 cut(s) 940
BseBI CCWGG 1 cut(s) 882
BseDI CCNNGG 1 cut(s) 28
BseGI GGATG 5 cut(s) 82, 562, 676, 693, 1000
BseLI CCNNNNNNNGG 3 cut(s) 350, 631, 816
BseMII CTCAG 3 cut(s) 198, 947, 989
BseNI ACTGG 1 cut(s) 940
BseSI GKGCMC 1 cut(s) 765
BseXI GCAGC 5 cut(s) 181, 184, 505, 533, 605
BsgI GTGCAG 1 cut(s) 612
BshFI GGCC 6 cut(s) 27, 414, 763, 773, 809, 865
BslFI GGGAC 2 cut(s) 857, 985
BslI CCNNNNNNNGG 3 cut(s) 350, 631, 816
BsmAI GTCTC 3 cut(s) 467, 500, 887
BsmBI CGTCTC 1 cut(s) 500
BsmFI GGGAC 2 cut(s) 857, 985
BsnI GGCC 6 cut(s) 27, 414, 763, 773, 809, 865
Bsp120I GGGCCC 1 cut(s) 761
Bsp1286I GDGCHC 1 cut(s) 765
Bsp143I GATC 4 cut(s) 273, 346, 450, 799
Bsp19I CCATGG 1 cut(s) 28
BspANI GGCC 6 cut(s) 27, 414, 763, 773, 809, 865
BspCNI CTCAG 3 cut(s) 199, 948, 988
BspLI GGNNCC 3 cut(s) 246, 762, 763
BspMAI CTGCAG 2 cut(s) 301, 523
BspPI GGATC 1 cut(s) 281
BspQI GCTCTTC 1 cut(s) 733
BspTI CTTAAG 2 cut(s) 310, 857
BsrI ACTGG 1 cut(s) 940
BssECI CCNNGG 1 cut(s) 28
BssMI GATC 4 cut(s) 273, 346, 450, 799
BssSI CACGAG 1 cut(s) 927
BssT1I CCWWGG 1 cut(s) 28
Bst2BI CACGAG 1 cut(s) 927
Bst2UI CCWGG 1 cut(s) 882
Bst4CI ACNGT 1 cut(s) 478
Bst6I CTCTTC 1 cut(s) 733
BstAFI CTTAAG 2 cut(s) 310, 857
BstAPI GCANNNNNTGC 1 cut(s) 194
BstC8I GCNNGC 2 cut(s) 202, 924
BstDEI CTNAG 5 cut(s) 98, 207, 256, 956, 975
BstDSI CCRYGG 1 cut(s) 28
BstEII GGTNACC 1 cut(s) 1016
BstF5I GGATG 5 cut(s) 82, 562, 676, 693, 1000
BstH2I RGCGCY 1 cut(s) 207
BstHHI GCGC 2 cut(s) 206, 317
BstKTI GATC 4 cut(s) 276, 349, 453, 802
BstMAI GTCTC 3 cut(s) 467, 500, 887
BstMBI GATC 4 cut(s) 273, 346, 450, 799
BstMWI GCNNNNNNNGC 2 cut(s) 194, 203
BstNI CCWGG 1 cut(s) 882
BstPI GGTNACC 1 cut(s) 1016
BstSCI CCNGG 1 cut(s) 880
BstSFI CTRYAG 3 cut(s) 297, 519, 947
BstSLI GKGCMC 1 cut(s) 765
BstV1I GCAGC 5 cut(s) 181, 184, 505, 533, 605
BstV2I GAAGAC 1 cut(s) 269
BstX2I RGATCY 1 cut(s) 346
BstYI RGATCY 1 cut(s) 346
BsuI GTATCC 1 cut(s) 546
BsuRI GGCC 6 cut(s) 27, 414, 763, 773, 809, 865
BtgI CCRYGG 1 cut(s) 28
BtsCI GGATG 5 cut(s) 82, 562, 676, 693, 1000
BtsI GCAGTG 1 cut(s) 571
BtsIMutI CAGTG 2 cut(s) 561, 571
Cac8I GCNNGC 2 cut(s) 202, 924
CaiI CAGNNNCTG 1 cut(s) 955
CfoI GCGC 2 cut(s) 206, 317
Cfr13I GGNCC 4 cut(s) 353, 412, 761, 762
CpoI CGGWCCG 1 cut(s) 353
CsiI ACCWGGT 1 cut(s) 880
Csp6I GTAC 4 cut(s) 214, 341, 358, 982
CspI CGGWCCG 1 cut(s) 353
CviAII CATG 9 cut(s) 29, 267, 391, 433, 500, 587, 709, 805, 847
CviQI GTAC 4 cut(s) 214, 341, 358, 982
DdeI CTNAG 5 cut(s) 98, 207, 256, 956, 975
DpnI GATC 4 cut(s) 275, 348, 452, 801
DpnII GATC 4 cut(s) 273, 346, 450, 799
EaeI YGGCCR 3 cut(s) 771, 807, 863
Eam1104I CTCTTC 1 cut(s) 733
EarI CTCTTC 1 cut(s) 733
Eco130I CCWWGG 1 cut(s) 28
Eco24I GRGCYC 1 cut(s) 765
Eco32I GATATC 1 cut(s) 307
Eco47I GGWCC 1 cut(s) 353
Eco47III AGCGCT 1 cut(s) 205
Eco57I CTGAAG 1 cut(s) 270
Eco91I GGTNACC 1 cut(s) 1016
EcoO109I RGGNCCY 1 cut(s) 761
EcoO65I GGTNACC 1 cut(s) 1016
EcoRII CCWGG 1 cut(s) 880
EcoRV GATATC 1 cut(s) 307
EcoT14I CCWWGG 1 cut(s) 28
EcoT38I GRGCYC 1 cut(s) 765
ErhI CCWWGG 1 cut(s) 28
Esp3I CGTCTC 1 cut(s) 500
FaeI CATG 9 cut(s) 32, 270, 394, 436, 503, 590, 712, 808, 850
FalI AAGNNNNNCTT 2 cut(s) 822, 854
FaqI GGGAC 2 cut(s) 857, 985
FatI CATG 9 cut(s) 28, 266, 390, 432, 499, 586, 708, 804, 846
FbaI TGATCA 1 cut(s) 450
FblI GTMKAC 1 cut(s) 429
Fnu4HI GCNGC 5 cut(s) 195, 198, 519, 522, 594
FokI GGATG 5 cut(s) 89, 569, 683, 700, 987
FriOI GRGCYC 1 cut(s) 765
Fsp4HI GCNGC 5 cut(s) 195, 198, 519, 522, 594
FspBI CTAG 3 cut(s) 155, 419, 789
GlaI GCGC 2 cut(s) 205, 316
GluI GCNGC 5 cut(s) 195, 198, 519, 522, 594
HaeII RGCGCY 1 cut(s) 207
HaeIII GGCC 6 cut(s) 27, 414, 763, 773, 809, 865
HhaI GCGC 2 cut(s) 206, 317
Hin1II CATG 9 cut(s) 32, 270, 394, 436, 503, 590, 712, 808, 850
Hin6I GCGC 2 cut(s) 204, 315
HinP1I GCGC 2 cut(s) 204, 315
HincII GTYRAC 1 cut(s) 152
HindII GTYRAC 1 cut(s) 152
HindIII AAGCTT 1 cut(s) 836
HinfI GANTC 9 cut(s) 19, 284, 322, 715, 853, 895, 962, 973, 997
Hpy166II GTNNAC 3 cut(s) 152, 404, 430
Hpy188I TCNGA 5 cut(s) 67, 180, 687, 957, 978
Hpy188III TCNNGA 6 cut(s) 482, 554, 614, 668, 797, 899
Hpy8I GTNNAC 3 cut(s) 152, 404, 430
HpyAV CCTTC 5 cut(s) 4, 139, 227, 227, 245
HpyCH4III ACNGT 1 cut(s) 478
HpyCH4IV ACGT 1 cut(s) 875
HpyCH4V TGCA 4 cut(s) 299, 499, 521, 593
HpyF10VI GCNNNNNNNGC 2 cut(s) 194, 203
HpyF3I CTNAG 5 cut(s) 98, 207, 256, 956, 975
HpySE526I ACGT 1 cut(s) 875
Hsp92II CATG 9 cut(s) 32, 270, 394, 436, 503, 590, 712, 808, 850
HspAI GCGC 2 cut(s) 204, 315
Ksp22I TGATCA 1 cut(s) 450
Kzo9I GATC 4 cut(s) 273, 346, 450, 799
LguI GCTCTTC 1 cut(s) 733
LmnI GCTCC 1 cut(s) 244
Lsp1109I GCAGC 5 cut(s) 181, 184, 505, 533, 605
LweI GCATC 2 cut(s) 644, 735
MabI ACCWGGT 1 cut(s) 880
MaeI CTAG 3 cut(s) 155, 419, 789
MaeII ACGT 1 cut(s) 875
MaeIII GTNAC 5 cut(s) 79, 673, 703, 876, 1016
MalI GATC 4 cut(s) 275, 348, 452, 801
MboI GATC 4 cut(s) 273, 346, 450, 799
MboII GAAGA 6 cut(s) 97, 100, 242, 274, 720, 957
MflI RGATCY 1 cut(s) 346
MhlI GDGCHC 1 cut(s) 765
MlsI TGGCCA 2 cut(s) 809, 865
MluCI AATT 2 cut(s) 115, 458
MluNI TGGCCA 2 cut(s) 809, 865
MlyI GAGTC 5 cut(s) 278, 724, 889, 967, 991
MmeI TCCRAC 2 cut(s) 71, 665
MnlI CCTC 5 cut(s) 54, 95, 115, 264, 843
Mox20I TGGCCA 2 cut(s) 809, 865
MscI TGGCCA 2 cut(s) 809, 865
MseI TTAA 6 cut(s) 311, 578, 599, 834, 858, 1011
MslI CAYNNNNRTG 1 cut(s) 669
Msp20I TGGCCA 2 cut(s) 809, 865
MspCI CTTAAG 2 cut(s) 310, 857
MspR9I CCNGG 1 cut(s) 882
MvaI CCWGG 1 cut(s) 882
MwoI GCNNNNNNNGC 2 cut(s) 194, 203
NcoI CCATGG 1 cut(s) 28
NdeII GATC 4 cut(s) 273, 346, 450, 799
NlaIII CATG 9 cut(s) 32, 270, 394, 436, 503, 590, 712, 808, 850
NlaIV GGNNCC 3 cut(s) 246, 762, 763
NmeAIII GCCGAG 1 cut(s) 749
NmuCI GTSAC 1 cut(s) 673
PciSI GCTCTTC 1 cut(s) 733
PfeI GAWTC 4 cut(s) 19, 322, 853, 962
PkrI GCNGC 5 cut(s) 196, 199, 520, 523, 595
PleI GAGTC 5 cut(s) 278, 723, 889, 967, 991
PpsI GAGTC 5 cut(s) 278, 723, 889, 967, 991
PsiI TTATAA 1 cut(s) 549
Psp1406I AACGTT 1 cut(s) 875
Psp6I CCWGG 1 cut(s) 880
PspEI GGTNACC 1 cut(s) 1016
PspGI CCWGG 1 cut(s) 880
PspN4I GGNNCC 3 cut(s) 246, 762, 763
PspOMI GGGCCC 1 cut(s) 761
PspPI GGNCC 4 cut(s) 353, 412, 761, 762
PstI CTGCAG 2 cut(s) 301, 523
PstNI CAGNNNCTG 1 cut(s) 955
PsuI RGATCY 1 cut(s) 346
RsaI GTAC 4 cut(s) 215, 342, 359, 983
RsaNI GTAC 4 cut(s) 214, 341, 358, 982
RseI CAYNNNNRTG 1 cut(s) 669
Rsr2I CGGWCCG 1 cut(s) 353
RsrII CGGWCCG 1 cut(s) 353
SapI GCTCTTC 1 cut(s) 733
SaqAI TTAA 6 cut(s) 311, 578, 599, 834, 858, 1011
SatI GCNGC 5 cut(s) 195, 198, 519, 522, 594
Sau3AI GATC 4 cut(s) 273, 346, 450, 799
Sau96I GGNCC 4 cut(s) 353, 412, 761, 762
SchI GAGTC 5 cut(s) 278, 724, 889, 967, 991
ScrFI CCNGG 1 cut(s) 882
SduI GDGCHC 1 cut(s) 765
SexAI ACCWGGT 1 cut(s) 880
SfaNI GCATC 2 cut(s) 644, 735
SfcI CTRYAG 3 cut(s) 297, 519, 947
SinI GGWCC 1 cut(s) 353
SmiMI CAYNNNNRTG 1 cut(s) 669
SmlI CTYRAG 2 cut(s) 310, 857
SmoI CTYRAG 2 cut(s) 310, 857
Sse9I AATT 2 cut(s) 115, 458
SspMI CTAG 3 cut(s) 155, 419, 789
StyD4I CCNGG 1 cut(s) 880
StyI CCWWGG 1 cut(s) 28
TaaI ACNGT 1 cut(s) 478
TaiI ACGT 1 cut(s) 878
TaqI TCGA 1 cut(s) 385
TaqII GACCGA 1 cut(s) 341
TasI AATT 2 cut(s) 115, 458
TfiI GAWTC 4 cut(s) 19, 322, 853, 962
Tru1I TTAA 6 cut(s) 311, 578, 599, 834, 858, 1011
Tru9I TTAA 6 cut(s) 311, 578, 599, 834, 858, 1011
TscAI CASTG 2 cut(s) 568, 578
TseFI GTSAC 1 cut(s) 673
TseI GCWGC 5 cut(s) 194, 197, 518, 521, 593
Tsp45I GTSAC 1 cut(s) 673
TspDTI ATGAA 3 cut(s) 449, 650, 660
TspGWI ACGGA 1 cut(s) 345
TspRI CASTG 2 cut(s) 568, 578
Vha464I CTTAAG 2 cut(s) 310, 857
VpaK11BI GGWCC 1 cut(s) 353
XapI RAATTY 1 cut(s) 458
XmiI GTMKAC 1 cut(s) 429
XspI CTAG 3 cut(s) 155, 419, 789
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.