Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0003161

Physical Location & Seq

Genomic Coordinates Reverse (-)

18711055 .. 18711996

Gene Structure 942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g20600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGGCAGGATGATAGGTAGTTACGGGACAGGCTTAGGCCGTACTGACGTGATGCAGGTGAACCCCTACAACGGGGTTGTTGCTTTGGGTCATTCAGGTGGTAAAGTTTCCATGTGGAAACCTACAAGCTCTGCTCCCCTCCTCCAGAGGCTGTGTCACAAGGGTCCCATCTCAGCTATGGCATTTCATCCTAATGGCCATCTCATGGCCACAGCTGGGAAAGAGAAGAAAATCATGCTTTGGGATTTAAGGAAACTTCAGGATCAGCCTCTTCAAACTTTACCGGGCAATGCAACGACTTTGGATTTCAGTCAGAAAGGTCTGCTTGCTCGTGGGACTAGTTCATATGTGCAGATCCTGGGAGATTTTTCTGGGACTCAGAACTACGAGAAGTATATGGATCATACAATGATTAAAGGGTACCCAATAGGAAAGGTGTTGTTTCGACCTTATGAAGATGTCCTGGGCATAGGGCACTCCATGGGGTGGTCTAGTATTCTGAGTCCTGGTTCTGGAGAACCCAACTTTGATACCTGGGTGGTGAATCCATTTGAAACATCTAAACAGAGAAGAGAGAAGGAAGTGCATGCTCTACTTGATAAGCTCCCACCTGAGACAATCATGTTGAATCCGACGGAGCTTGGCACCCTAAAGCCTCAGAGAGGGAAAGAGAGGCGAACAAAGGAGGAGAAACAGGCAGAGATGGAAGCTGCCGTGGAATCTGTCAAGGGCGTTGAACATAAGAAGAAAACAAAAGCGAGGAATAAGCCGAGCAAGAGGGCAAAGAAGAAGCAGGAGATGATTGTGAGCGCCAAAAGGCCGTTCTTGGAGCAACAAAAGAAAGAGGAAGAACAATTGGCTAGGAAGAAGCAGAAAATAAGTGAGCATGTAGAACAACCAACAGCTTTGCAGAGGTTTGTTCACAAGAAAGCAGCTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005732 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BING4CT WD40

Protein Analysis

314

Amino Acids

35.1

Weight (kDa)

9.86

Isoelectric Point (pI)

41.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR3_1st	PF25173	17 - 86	4.1e-09	WDR3 first beta-propeller domain
Beta-prop_EML_2	PF23414	17 - 119	3.9e-07	Echinoderm microtubule-associated protein second beta-propeller
WD40_Prp19	PF24814	18 - 134	2.7e-12	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	21 - 120	1.8e-09	THOC3 beta-propeller domain
Beta-prop_EML	PF23409	24 - 100	9.4e-06	Echinoderm microtubule-associated protein first beta-propeller
WD40	PF00400	50 - 82	1.3e-06	WD domain, G-beta repeat
BING4CT	PF08149	132 - 210	5.1e-32	BING4CT (NUC141) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10530
fragaria_vesca	FvH4_7g06900 FvH4_7g06900
malus_domestica	MD07G1075700.v1.1 MD13G1165600.v1.1
prunus_persica	Prupe.2G096600_v2.0.a1 Prupe.2G096600_v2.0.a1
pyrus_communis	pycom02g20600 pycom07g05980 pycom13g14170
rosa_chinensis	RchiOBHm_Chr1g0336741 RchiOBHm_Chr1g0336801 RchiOBHm_Chr1g0336811 RchiOBHm_Chr1g0336821
rosa_laevigata	RLG00000029332 RLG00000029335 RLG00000029337
rosa_multiflora	Rmu_sc0000907.1_g000012 Rmu_sc0000907.1_g000017 Rmu_sc0000907.1_g000032 Rmu_sc0000907.1_g000033 Rmu_sc0011778.1_g000010
rosa_roxburghii	Rroxscaffold_4G00315350
rosa_rugosa	Rorug01G0127500 Rorug01G0127800 Rorug01G0127900
rosa_samantha	Rh1AG148700 Rh1AG148900 Rh1BG116800 Rh1BG116900 Rh1CG140100 Rh1DG155500 Rh1DG156000 Rh1DG156100 Rh5AG191600
rosa_wichuraiana	Rw1G012000 Rw1G012010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	46
Acc36I	ACCTGC	1 cut(s)	46
Acc65I	GGTACC	1 cut(s)	420
AccB1I	GGYRCC	2 cut(s)	420, 644
AccB7I	CCANNNNNTGG	2 cut(s)	205, 486
AclWI	GGATC	3 cut(s)	270, 349, 408
AcoI	YGGCCR	2 cut(s)	196, 207
AcuI	CTGAAG	1 cut(s)	242
AfaI	GTAC	2 cut(s)	43, 422
AfiI	CCNNNNNNNGG	7 cut(s)	71, 72, 205, 216, 486, 512, 662
AgsI	TTSAA	4 cut(s)	275, 554, 628, 737
AhlI	ACTAGT	1 cut(s)	338
AjiI	CACGTC	1 cut(s)	49
AjnI	CCWGG	4 cut(s)	357, 462, 505, 533
AjuI	GAANNNNNNNTTGG	2 cut(s)	806, 838
AluBI	AGCT	8 cut(s)	129, 176, 215, 604, 640, 710, 905, 935
AluI	AGCT	8 cut(s)	129, 176, 215, 604, 640, 710, 905, 935
Alw26I	GTCTC	1 cut(s)	608
AlwI	GGATC	3 cut(s)	270, 349, 408
AlwNI	CAGNNNCTG	2 cut(s)	151, 358
AoxI	GGCC	4 cut(s)	37, 196, 207, 818
ApeKI	GCWGC	2 cut(s)	710, 932
Asp718I	GGTACC	1 cut(s)	420
AspLEI	GCGC	1 cut(s)	812
AspS9I	GGNCC	1 cut(s)	164
AsuC2I	CCSGG	1 cut(s)	285
AsuHPI	GGTGA	2 cut(s)	70, 553
AvaII	GGWCC	1 cut(s)	164
BaeGI	GKGCMC	1 cut(s)	477
BaeI	ACNNNNGTAYC	2 cut(s)	522, 555
BalI	TGGCCA	2 cut(s)	198, 209
BanI	GGYRCC	2 cut(s)	420, 644
BauI	CACGAG	1 cut(s)	330
BbvI	GCAGC	1 cut(s)	697
BccI	CCATC	3 cut(s)	176, 207, 697
BceAI	ACGGC	3 cut(s)	24, 698, 805
BciT130I	CCWGG	4 cut(s)	359, 464, 507, 535
BcnI	CCSGG	1 cut(s)	285
BcoDI	GTCTC	1 cut(s)	608
BcuI	ACTAGT	1 cut(s)	338
BfaI	CTAG	3 cut(s)	339, 492, 861
BfoI	RGCGCY	1 cut(s)	813
BfuAI	ACCTGC	1 cut(s)	46
BisI	GCNGC	2 cut(s)	711, 933
BlsI	GCNGC	2 cut(s)	712, 934
Bme1390I	CCNGG	5 cut(s)	285, 359, 464, 507, 535
Bme18I	GGWCC	1 cut(s)	164
BmgBI	CACGTC	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	164
BmiI	GGNNCC	4 cut(s)	165, 166, 422, 646
BmrFI	CCNGG	5 cut(s)	285, 359, 464, 507, 535
BmsI	GCATC	1 cut(s)	42
BpmI	CTGGAG	2 cut(s)	128, 534
Bpu10I	CCTNAGC	1 cut(s)	34
BpuMI	CCSGG	1 cut(s)	285
BsaJI	CCNNGG	5 cut(s)	358, 463, 480, 534, 714
Bsc4I	CCNNNNNNNGG	7 cut(s)	71, 72, 205, 216, 486, 512, 662
Bse3DI	GCAATG	1 cut(s)	295
BseBI	CCWGG	4 cut(s)	359, 464, 507, 535
BseDI	CCNNGG	5 cut(s)	358, 463, 480, 534, 714
BseGI	GGATG	2 cut(s)	15, 187
BseLI	CCNNNNNNNGG	7 cut(s)	71, 72, 205, 216, 486, 512, 662
BseMI	GCAATG	1 cut(s)	295
BseMII	CTCAG	5 cut(s)	186, 392, 491, 603, 671
BseRI	GAGGAG	2 cut(s)	131, 701
BseSI	GKGCMC	1 cut(s)	477
BseXI	GCAGC	1 cut(s)	697
BseYI	CCCAGC	1 cut(s)	215
BsgI	GTGCAG	1 cut(s)	371
BshFI	GGCC	4 cut(s)	39, 198, 209, 820
BshNI	GGYRCC	2 cut(s)	420, 644
BsiSI	CCGG	1 cut(s)	284
BslFI	GGGAC	4 cut(s)	40, 150, 349, 388
BslI	CCNNNNNNNGG	7 cut(s)	71, 72, 205, 216, 486, 512, 662
BsmAI	GTCTC	1 cut(s)	608
BsmFI	GGGAC	4 cut(s)	40, 150, 349, 388
BsnI	GGCC	4 cut(s)	39, 198, 209, 820
Bsp1286I	GDGCHC	1 cut(s)	477
Bsp143I	GATC	3 cut(s)	262, 354, 400
Bsp19I	CCATGG	1 cut(s)	480
BspANI	GGCC	4 cut(s)	39, 198, 209, 820
BspCNI	CTCAG	5 cut(s)	185, 391, 492, 604, 670
BspLI	GGNNCC	4 cut(s)	165, 166, 422, 646
BspMI	ACCTGC	1 cut(s)	46
BspPI	GGATC	3 cut(s)	270, 349, 408
BspT107I	GGYRCC	2 cut(s)	420, 644
BsrDI	GCAATG	1 cut(s)	295
BssECI	CCNNGG	5 cut(s)	358, 463, 480, 534, 714
BssMI	GATC	3 cut(s)	262, 354, 400
BssSI	CACGAG	1 cut(s)	330
BssT1I	CCWWGG	1 cut(s)	480
Bst2BI	CACGAG	1 cut(s)	330
Bst2UI	CCWGG	4 cut(s)	359, 464, 507, 535
Bst6I	CTCTTC	2 cut(s)	276, 565
BstC8I	GCNNGC	2 cut(s)	327, 588
BstDEI	CTNAG	6 cut(s)	34, 172, 378, 500, 612, 657
BstDSI	CCRYGG	2 cut(s)	480, 714
BstENI	CCTNNNNNAGG	1 cut(s)	660
BstF5I	GGATG	2 cut(s)	15, 187
BstH2I	RGCGCY	1 cut(s)	813
BstHHI	GCGC	1 cut(s)	812
BstKTI	GATC	3 cut(s)	265, 357, 403
BstMAI	GTCTC	1 cut(s)	608
BstMBI	GATC	3 cut(s)	262, 354, 400
BstNI	CCWGG	4 cut(s)	359, 464, 507, 535
BstNSI	RCATGY	2 cut(s)	590, 890
BstSCI	CCNGG	5 cut(s)	283, 357, 462, 505, 533
BstSLI	GKGCMC	1 cut(s)	477
BstV1I	GCAGC	1 cut(s)	697
BstX2I	RGATCY	1 cut(s)	354
BstYI	RGATCY	1 cut(s)	354
BsuRI	GGCC	4 cut(s)	39, 198, 209, 820
BtgI	CCRYGG	2 cut(s)	480, 714
BtrI	CACGTC	1 cut(s)	49
BtsCI	GGATG	2 cut(s)	15, 187
BveI	ACCTGC	1 cut(s)	46
Cac8I	GCNNGC	2 cut(s)	327, 588
CaiI	CAGNNNCTG	2 cut(s)	151, 358
CfoI	GCGC	1 cut(s)	812
Cfr13I	GGNCC	1 cut(s)	164
Csp6I	GTAC	2 cut(s)	42, 421
CviAII	CATG	7 cut(s)	112, 205, 235, 481, 587, 622, 887
CviQI	GTAC	2 cut(s)	42, 421
DdeI	CTNAG	6 cut(s)	34, 172, 378, 500, 612, 657
DpnI	GATC	3 cut(s)	264, 356, 402
DpnII	GATC	3 cut(s)	262, 354, 400
EaeI	YGGCCR	2 cut(s)	196, 207
Eam1104I	CTCTTC	2 cut(s)	276, 565
EarI	CTCTTC	2 cut(s)	276, 565
Eco130I	CCWWGG	1 cut(s)	480
Eco47I	GGWCC	1 cut(s)	164
Eco57I	CTGAAG	1 cut(s)	242
EcoNI	CCTNNNNNAGG	1 cut(s)	660
EcoO109I	RGGNCCY	1 cut(s)	164
EcoRII	CCWGG	4 cut(s)	357, 462, 505, 533
EcoT14I	CCWWGG	1 cut(s)	480
ErhI	CCWWGG	1 cut(s)	480
FaeI	CATG	7 cut(s)	115, 208, 238, 484, 590, 625, 890
FalI	AAGNNNNNCTT	2 cut(s)	309, 341
FaqI	GGGAC	4 cut(s)	40, 150, 349, 388
FatI	CATG	7 cut(s)	111, 204, 234, 480, 586, 621, 886
FauNDI	CATATG	1 cut(s)	346
Fnu4HI	GCNGC	2 cut(s)	711, 933
FokI	GGATG	2 cut(s)	22, 174
Fsp4HI	GCNGC	2 cut(s)	711, 933
FspBI	CTAG	3 cut(s)	339, 492, 861
GlaI	GCGC	1 cut(s)	811
GluI	GCNGC	2 cut(s)	711, 933
GsaI	CCCAGC	1 cut(s)	219
GsuI	CTGGAG	2 cut(s)	128, 534
HaeII	RGCGCY	1 cut(s)	813
HaeIII	GGCC	4 cut(s)	39, 198, 209, 820
HapII	CCGG	1 cut(s)	284
HhaI	GCGC	1 cut(s)	812
Hin1II	CATG	7 cut(s)	115, 208, 238, 484, 590, 625, 890
Hin6I	GCGC	1 cut(s)	810
HinP1I	GCGC	1 cut(s)	810
HinfI	GANTC	5 cut(s)	376, 502, 544, 628, 719
HpaII	CCGG	1 cut(s)	284
HphI	GGTGA	2 cut(s)	70, 553
Hpy166II	GTNNAC	2 cut(s)	61, 922
Hpy188I	TCNGA	5 cut(s)	315, 381, 501, 633, 660
Hpy188III	TCNNGA	3 cut(s)	145, 260, 513
Hpy8I	GTNNAC	2 cut(s)	61, 922
Hpy99I	CGWCG	1 cut(s)	637
HpyAV	CCTTC	1 cut(s)	571
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	5 cut(s)	55, 293, 352, 586, 910
HpyF3I	CTNAG	6 cut(s)	34, 172, 378, 500, 612, 657
HpySE526I	ACGT	1 cut(s)	48
Hsp92II	CATG	7 cut(s)	115, 208, 238, 484, 590, 625, 890
HspAI	GCGC	1 cut(s)	810
KflI	GGGWCCC	1 cut(s)	164
KpnI	GGTACC	1 cut(s)	424
Kzo9I	GATC	3 cut(s)	262, 354, 400
LmnI	GCTCC	4 cut(s)	139, 609, 637, 829
Lsp1109I	GCAGC	1 cut(s)	697
LweI	GCATC	1 cut(s)	42
MaeI	CTAG	3 cut(s)	339, 492, 861
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	2 cut(s)	20, 155
MalI	GATC	3 cut(s)	264, 356, 402
MboI	GATC	3 cut(s)	262, 354, 400
MboII	GAAGA	8 cut(s)	238, 263, 467, 582, 757, 799, 860, 877
MfeI	CAATTG	1 cut(s)	854
MflI	RGATCY	1 cut(s)	354
MhlI	GDGCHC	1 cut(s)	477
MlsI	TGGCCA	2 cut(s)	198, 209
MluCI	AATT	1 cut(s)	854
MluNI	TGGCCA	2 cut(s)	198, 209
MlyI	GAGTC	2 cut(s)	370, 511
MmeI	TCCRAC	1 cut(s)	656
Mox20I	TGGCCA	2 cut(s)	198, 209
MscI	TGGCCA	2 cut(s)	198, 209
MseI	TTAA	2 cut(s)	248, 414
MslI	CAYNNNNRTG	2 cut(s)	96, 192
Msp20I	TGGCCA	2 cut(s)	198, 209
MspA1I	CMGCKG	1 cut(s)	215
MspI	CCGG	1 cut(s)	284
MspR9I	CCNGG	5 cut(s)	285, 359, 464, 507, 535
MunI	CAATTG	1 cut(s)	854
MvaI	CCWGG	4 cut(s)	359, 464, 507, 535
NciI	CCSGG	1 cut(s)	285
NcoI	CCATGG	1 cut(s)	480
NdeI	CATATG	1 cut(s)	346
NdeII	GATC	3 cut(s)	262, 354, 400
NlaIII	CATG	7 cut(s)	115, 208, 238, 484, 590, 625, 890
NlaIV	GGNNCC	4 cut(s)	165, 166, 422, 646
NmeAIII	GCCGAG	1 cut(s)	795
NmuCI	GTSAC	1 cut(s)	155
NspI	RCATGY	2 cut(s)	590, 890
PaeI	GCATGC	1 cut(s)	590
PaqCI	CACCTGC	1 cut(s)	46
PfeI	GAWTC	3 cut(s)	544, 628, 719
PflMI	CCANNNNNTGG	2 cut(s)	205, 486
PkrI	GCNGC	2 cut(s)	712, 934
PleI	GAGTC	2 cut(s)	370, 510
PpsI	GAGTC	2 cut(s)	370, 510
PpuMI	RGGWCCY	1 cut(s)	164
Psp5II	RGGWCCY	1 cut(s)	164
Psp6I	CCWGG	4 cut(s)	357, 462, 505, 533
PspFI	CCCAGC	1 cut(s)	215
PspGI	CCWGG	4 cut(s)	357, 462, 505, 533
PspN4I	GGNNCC	4 cut(s)	165, 166, 422, 646
PspPI	GGNCC	1 cut(s)	164
PspPPI	RGGWCCY	1 cut(s)	164
PstNI	CAGNNNCTG	2 cut(s)	151, 358
PsuI	RGATCY	1 cut(s)	354
PvuII	CAGCTG	1 cut(s)	215
RsaI	GTAC	2 cut(s)	43, 422
RsaNI	GTAC	2 cut(s)	42, 421
RseI	CAYNNNNRTG	2 cut(s)	96, 192
SaqAI	TTAA	2 cut(s)	248, 414
SatI	GCNGC	2 cut(s)	711, 933
Sau3AI	GATC	3 cut(s)	262, 354, 400
Sau96I	GGNCC	1 cut(s)	164
SchI	GAGTC	2 cut(s)	370, 511
ScrFI	CCNGG	5 cut(s)	285, 359, 464, 507, 535
SduI	GDGCHC	1 cut(s)	477
SfaNI	GCATC	1 cut(s)	42
SinI	GGWCC	1 cut(s)	164
SmiMI	CAYNNNNRTG	2 cut(s)	96, 192
SpeI	ACTAGT	1 cut(s)	338
SphI	GCATGC	1 cut(s)	590
Sse9I	AATT	1 cut(s)	854
SspMI	CTAG	3 cut(s)	339, 492, 861
StyD4I	CCNGG	5 cut(s)	283, 357, 462, 505, 533
StyI	CCWWGG	1 cut(s)	480
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	1 cut(s)	445
TasI	AATT	1 cut(s)	854
TfiI	GAWTC	3 cut(s)	544, 628, 719
Tru1I	TTAA	2 cut(s)	248, 414
Tru9I	TTAA	2 cut(s)	248, 414
TseFI	GTSAC	1 cut(s)	155
TseI	GCWGC	2 cut(s)	710, 932
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	3 cut(s)	176, 333, 468
TspGWI	ACGGA	1 cut(s)	650
Van91I	CCANNNNNTGG	2 cut(s)	205, 486
VpaK11BI	GGWCC	1 cut(s)	164
XagI	CCTNNNNNAGG	1 cut(s)	660
XceI	RCATGY	2 cut(s)	590, 890
XcmI	CCANNNNNNNNNTGG	1 cut(s)	175
XspI	CTAG	3 cut(s)	339, 492, 861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.