Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003161

Physical Location & Seq

Genomic Coordinates Forward (+)

28494681 .. 28495162

Gene Structure 482 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56474

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGTGGAGTCCTACAAGCTCTTCTGCTGTTATTGAGATGCTGTGCCACAAGAGGCCCATCTCGGCCATAGCTTTCCACCCTAGTAATCGTGATCTCATGGCCACATCTGGGAAAGAGAAAAAAGCTAAGCTTTGGGACATGAGGAATCTTAAGTGGCCACTCCAAATGTTACCGGGTCAGGCAGAGACTCTGGATTTCGATCAAAAGGGTCTGCTCGCTCGTGGAACTGGGTCTTTTCTACCGGTTCTGAGAGATTCTTCTGGGACTCAGAAGTACGAGAAATATATGACTCATCCATCAGTTAAAGTTTATCAAATAGAAAAGGTGTTGTTTCGACCAATAAACATCTTCATAGCACAGGGCACTCCATGGGGTGGTCTAGTATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005732 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BING4CT WD40

Protein Analysis

129

Amino Acids

14.6

Weight (kDa)

9.76

Isoelectric Point (pI)

47.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_THOC3	PF25174	2 - 61	1.3e-06	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10530
fragaria_vesca	FvH4_7g06900 FvH4_7g06900
malus_domestica	MD07G1075700.v1.1 MD13G1165600.v1.1
prunus_persica	Prupe.2G096600_v2.0.a1 Prupe.2G096600_v2.0.a1
pyrus_communis	pycom02g20600 pycom07g05980 pycom13g14170
rosa_chinensis	RchiOBHm_Chr1g0336741 RchiOBHm_Chr1g0336801 RchiOBHm_Chr1g0336811 RchiOBHm_Chr1g0336821
rosa_laevigata	RLG00000029332 RLG00000029335 RLG00000029337
rosa_multiflora	Rmu_sc0000907.1_g000012 Rmu_sc0000907.1_g000017 Rmu_sc0000907.1_g000032 Rmu_sc0000907.1_g000033 Rmu_sc0011778.1_g000010
rosa_roxburghii	Rroxscaffold_4G00315350
rosa_rugosa	Rorug01G0127500 Rorug01G0127800 Rorug01G0127900
rosa_samantha	Rh1AG148700 Rh1AG148900 Rh1BG116800 Rh1BG116900 Rh1CG140100 Rh1DG155500 Rh1DG156000 Rh1DG156100 Rh5AG191600
rosa_wichuraiana	Rw1G012000 Rw1G012010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	374
AcoI	YGGCCR	3 cut(s)	63, 99, 155
AfaI	GTAC	1 cut(s)	275
AfiI	CCNNNNNNNGG	2 cut(s)	108, 374
AflII	CTTAAG	1 cut(s)	149
AgeI	ACCGGT	1 cut(s)	241
AluBI	AGCT	4 cut(s)	18, 71, 125, 130
AluI	AGCT	4 cut(s)	18, 71, 125, 130
Alw26I	GTCTC	1 cut(s)	179
AoxI	GGCC	4 cut(s)	53, 63, 99, 155
AsiGI	ACCGGT	1 cut(s)	241
AspS9I	GGNCC	1 cut(s)	54
AsuC2I	CCSGG	1 cut(s)	174
BaeGI	GKGCMC	1 cut(s)	365
BalI	TGGCCA	2 cut(s)	101, 157
BauI	CACGAG	1 cut(s)	219
BccI	CCATC	2 cut(s)	65, 304
BcnI	CCSGG	1 cut(s)	174
BcoDI	GTCTC	1 cut(s)	179
BfaI	CTAG	2 cut(s)	81, 380
BfrI	CTTAAG	1 cut(s)	149
BlpI	GCTNAGC	1 cut(s)	126
Bme1390I	CCNGG	1 cut(s)	174
BmgT120I	GGNCC	1 cut(s)	54
BmrFI	CCNGG	1 cut(s)	174
BmrI	ACTGGG	1 cut(s)	237
BmsI	GCATC	1 cut(s)	27
BmuI	ACTGGG	1 cut(s)	237
Bpu1102I	GCTNAGC	1 cut(s)	126
BpuMI	CCSGG	1 cut(s)	174
BsaBI	GATNNNNATC	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	368
BsaWI	WCCGGW	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	2 cut(s)	108, 374
Bse118I	RCCGGY	1 cut(s)	241
Bse1I	ACTGG	1 cut(s)	232
Bse8I	GATNNNNATC	1 cut(s)	198
BseDI	CCNNGG	1 cut(s)	368
BseGI	GGATG	1 cut(s)	292
BseJI	GATNNNNATC	1 cut(s)	198
BseLI	CCNNNNNNNGG	2 cut(s)	108, 374
BseMII	CTCAG	2 cut(s)	239, 281
BseNI	ACTGG	1 cut(s)	232
BseSI	GKGCMC	1 cut(s)	365
BshFI	GGCC	4 cut(s)	55, 65, 101, 157
BshTI	ACCGGT	1 cut(s)	241
BsiSI	CCGG	2 cut(s)	173, 242
BslFI	GGGAC	2 cut(s)	149, 277
BslI	CCNNNNNNNGG	2 cut(s)	108, 374
BsmAI	GTCTC	1 cut(s)	179
BsmFI	GGGAC	2 cut(s)	149, 277
BsnI	GGCC	4 cut(s)	55, 65, 101, 157
Bsp1286I	GDGCHC	1 cut(s)	365
Bsp143I	GATC	2 cut(s)	91, 199
Bsp1720I	GCTNAGC	1 cut(s)	126
Bsp19I	CCATGG	1 cut(s)	368
BspANI	GGCC	4 cut(s)	55, 65, 101, 157
BspCNI	CTCAG	2 cut(s)	240, 280
BspQI	GCTCTTC	1 cut(s)	25
BspTI	CTTAAG	1 cut(s)	149
BsrFI	RCCGGY	1 cut(s)	241
BsrI	ACTGG	1 cut(s)	232
BssAI	RCCGGY	1 cut(s)	241
BssECI	CCNNGG	1 cut(s)	368
BssMI	GATC	2 cut(s)	91, 199
BssSI	CACGAG	1 cut(s)	219
BssT1I	CCWWGG	1 cut(s)	368
Bst2BI	CACGAG	1 cut(s)	219
Bst6I	CTCTTC	1 cut(s)	25
BstAFI	CTTAAG	1 cut(s)	149
BstC8I	GCNNGC	1 cut(s)	216
BstDEI	CTNAG	3 cut(s)	126, 248, 267
BstDSI	CCRYGG	1 cut(s)	368
BstF5I	GGATG	1 cut(s)	292
BstKTI	GATC	2 cut(s)	94, 202
BstMAI	GTCTC	1 cut(s)	179
BstMBI	GATC	2 cut(s)	91, 199
BstSCI	CCNGG	1 cut(s)	172
BstSLI	GKGCMC	1 cut(s)	365
BsuRI	GGCC	4 cut(s)	55, 65, 101, 157
BtgI	CCRYGG	1 cut(s)	368
BtsCI	GGATG	1 cut(s)	292
Cac8I	GCNNGC	1 cut(s)	216
Cfr10I	RCCGGY	1 cut(s)	241
Cfr13I	GGNCC	1 cut(s)	54
Csp6I	GTAC	1 cut(s)	274
CspAI	ACCGGT	1 cut(s)	241
CviAII	CATG	3 cut(s)	97, 139, 369
CviJI	RGCY	8 cut(s)	18, 55, 65, 71, 101, 125, 130, 157
CviKI_1	RGCY	8 cut(s)	18, 55, 65, 71, 101, 125, 130, 157
CviQI	GTAC	1 cut(s)	274
DdeI	CTNAG	3 cut(s)	126, 248, 267
DpnI	GATC	2 cut(s)	93, 201
DpnII	GATC	2 cut(s)	91, 199
EaeI	YGGCCR	3 cut(s)	63, 99, 155
Eam1104I	CTCTTC	1 cut(s)	25
EarI	CTCTTC	1 cut(s)	25
Eco130I	CCWWGG	1 cut(s)	368
EcoT14I	CCWWGG	1 cut(s)	368
ErhI	CCWWGG	1 cut(s)	368
FaeI	CATG	3 cut(s)	100, 142, 372
FaiI	YATR	7 cut(s)	68, 98, 140, 285, 287, 353, 370
FalI	AAGNNNNNCTT	2 cut(s)	114, 146
FaqI	GGGAC	2 cut(s)	149, 277
FatI	CATG	3 cut(s)	96, 138, 368
FokI	GGATG	1 cut(s)	279
FspBI	CTAG	2 cut(s)	81, 380
HaeIII	GGCC	4 cut(s)	55, 65, 101, 157
HapII	CCGG	2 cut(s)	173, 242
Hin1II	CATG	3 cut(s)	100, 142, 372
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	6 cut(s)	7, 145, 187, 254, 265, 289
HpaII	CCGG	2 cut(s)	173, 242
Hpy188I	TCNGA	3 cut(s)	249, 270, 389
Hpy188III	TCNNGA	2 cut(s)	89, 191
HpyF3I	CTNAG	3 cut(s)	126, 248, 267
Hsp92II	CATG	3 cut(s)	100, 142, 372
Kzo9I	GATC	2 cut(s)	91, 199
LguI	GCTCTTC	1 cut(s)	25
LpnPI	CCDG	8 cut(s)	93, 164, 176, 186, 213, 246, 255, 344
LweI	GCATC	1 cut(s)	27
MaeI	CTAG	2 cut(s)	81, 380
MaeIII	GTNAC	1 cut(s)	168
MalI	GATC	2 cut(s)	93, 201
MboI	GATC	2 cut(s)	91, 199
MboII	GAAGA	3 cut(s)	12, 249, 340
MhlI	GDGCHC	1 cut(s)	365
MlsI	TGGCCA	2 cut(s)	101, 157
MluNI	TGGCCA	2 cut(s)	101, 157
MlyI	GAGTC	4 cut(s)	16, 181, 259, 283
MnlI	CCTC	2 cut(s)	45, 135
Mox20I	TGGCCA	2 cut(s)	101, 157
MscI	TGGCCA	2 cut(s)	101, 157
MseI	TTAA	2 cut(s)	150, 303
Msp20I	TGGCCA	2 cut(s)	101, 157
MspCI	CTTAAG	1 cut(s)	149
MspI	CCGG	2 cut(s)	173, 242
MspR9I	CCNGG	1 cut(s)	174
NciI	CCSGG	1 cut(s)	174
NcoI	CCATGG	1 cut(s)	368
NdeII	GATC	2 cut(s)	91, 199
NlaIII	CATG	3 cut(s)	100, 142, 372
NmeAIII	GCCGAG	1 cut(s)	41
PciSI	GCTCTTC	1 cut(s)	25
PfeI	GAWTC	2 cut(s)	145, 254
PflMI	CCANNNNNTGG	1 cut(s)	374
PinAI	ACCGGT	1 cut(s)	241
PleI	GAGTC	4 cut(s)	15, 181, 259, 283
PpsI	GAGTC	4 cut(s)	15, 181, 259, 283
PspPI	GGNCC	1 cut(s)	54
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
SapI	GCTCTTC	1 cut(s)	25
SaqAI	TTAA	2 cut(s)	150, 303
Sau3AI	GATC	2 cut(s)	91, 199
Sau96I	GGNCC	1 cut(s)	54
SchI	GAGTC	4 cut(s)	16, 181, 259, 283
ScrFI	CCNGG	1 cut(s)	174
SduI	GDGCHC	1 cut(s)	365
SetI	ASST	5 cut(s)	20, 73, 127, 132, 327
SfaNI	GCATC	1 cut(s)	27
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
SspMI	CTAG	2 cut(s)	81, 380
StyD4I	CCNGG	1 cut(s)	172
StyI	CCWWGG	1 cut(s)	368
TaqI	TCGA	2 cut(s)	198, 334
TfiI	GAWTC	2 cut(s)	145, 254
Tru1I	TTAA	2 cut(s)	150, 303
Tru9I	TTAA	2 cut(s)	150, 303
TspDTI	ATGAA	1 cut(s)	340
Van91I	CCANNNNNTGG	1 cut(s)	374
Vha464I	CTTAAG	1 cut(s)	149
XspI	CTAG	2 cut(s)	81, 380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.