Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003161

Physical Location & Seq

Genomic Coordinates Reverse (-)

36646589 .. 36648780

Gene Structure 2192 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029332

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGGTGTTGTGGTTAAAGAACTGGGATTGAAGGGAAAGAAAGGGAATATAGGGAAATCTGGAATCTCACCAGAAGATCTCGGTCTGTGCAGGCTGGATGATGAGACGATGTTTGCTGCAGCCCAGAAAAAGTATCCATATATTTATAATCGGGATGGCACTGAACTTCACTGCTTAAAGGAACATGGTGCAGCTTTAAGGCTTTGTTATCTTGAACAACACCGACTATTGGCATCAATAAATGAATATGGTCAGCTTCATTATCAGGATGTAAACCACCACAATGCACTTCTTGCTTTAGGTCATTCAGGTGGTGAAGTTACCATGTGGAGTCCTACAAGCTCTTCTGCTGTTATTGAGATGCTGTGCCACAAGGGGCCCATCTTGGCCATAGCTTTCCACCCTAGTAATCGTGATCTCATGGCCACATCTGGGAATGAGAAAAAAGTTAAGCTTTGGGACTTGAGGAATCTTAAGTGGCCACTCCAAACGTTACCAGCTCAGGCAGAGACTCTGGATTTCAGTCAAAAGGGTTTGCTCGCTCGTGGAACTGGGTCTTTTCTACAGGTTCTGATAGATTCTTCTGGGACTCAGAAAGAAGAGAGAGGGAAGTGCACCCTACTTGATGAGCTCCCACCTGAGACAATTATGTTTGATCCCACAAAGATTGGCACAGTGAAACCTCCAAGAAAAGAGAAACCAACAAAGGAGGAGAAAGAGGCTGAGCTGGAAGCGGCTGTTGAAGTTGCCAAGGACATTGTCCCAAAGAATAAAACAAATGGGAGGAGTAAGCCAAGTAAGATGAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005732 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BING4CT WD40

Protein Analysis

271

Amino Acids

29.9

Weight (kDa)

8.8

Isoelectric Point (pI)

37.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_THOC3	PF25174	65 - 183	1.7e-10	THOC3 beta-propeller domain
Beta-prop_EML_2	PF23414	65 - 178	9.6e-06	Echinoderm microtubule-associated protein second beta-propeller
WD40_Prp19	PF24814	69 - 178	6.4e-10	Prp19 WD40 domain
WD40_WDHD1_1st	PF24817	90 - 181	2.3e-06	WDHD1 first WD40 domain
WD40_CDC20-Fz	PF24807	91 - 158	2.9e-07	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	91 - 156	3.2e-07	WDR3 first beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10530
fragaria_vesca	FvH4_7g06900 FvH4_7g06900
malus_domestica	MD07G1075700.v1.1 MD13G1165600.v1.1
prunus_persica	Prupe.2G096600_v2.0.a1 Prupe.2G096600_v2.0.a1
pyrus_communis	pycom02g20600 pycom07g05980 pycom13g14170
rosa_chinensis	RchiOBHm_Chr1g0336741 RchiOBHm_Chr1g0336801 RchiOBHm_Chr1g0336811 RchiOBHm_Chr1g0336821
rosa_laevigata	RLG00000029332 RLG00000029335 RLG00000029337
rosa_multiflora	Rmu_sc0000907.1_g000012 Rmu_sc0000907.1_g000017 Rmu_sc0000907.1_g000032 Rmu_sc0000907.1_g000033 Rmu_sc0011778.1_g000010
rosa_roxburghii	Rroxscaffold_4G00315350
rosa_rugosa	Rorug01G0127500 Rorug01G0127800 Rorug01G0127900
rosa_samantha	Rh1AG148700 Rh1AG148900 Rh1BG116800 Rh1BG116900 Rh1CG140100 Rh1DG155500 Rh1DG156000 Rh1DG156100 Rh5AG191600
rosa_wichuraiana	Rw1G012000 Rw1G012010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	147
AciI	CCGC	1 cut(s)	734
AclI	AACGTT	1 cut(s)	491
AclWI	GGATC	1 cut(s)	650
AcoI	YGGCCR	3 cut(s)	387, 423, 479
AfiI	CCNNNNNNNGG	2 cut(s)	229, 432
AflII	CTTAAG	1 cut(s)	473
AgsI	TTSAA	3 cut(s)	31, 215, 743
AluBI	AGCT	8 cut(s)	194, 256, 342, 395, 454, 500, 631, 727
AluI	AGCT	8 cut(s)	194, 256, 342, 395, 454, 500, 631, 727
Alw21I	GWGCWC	2 cut(s)	617, 633
Alw26I	GTCTC	3 cut(s)	98, 503, 635
Alw44I	GTGCAC	1 cut(s)	613
AlwI	GGATC	1 cut(s)	650
AlwNI	CAGNNNCTG	1 cut(s)	571
AoxI	GGCC	4 cut(s)	377, 387, 423, 479
ApaI	GGGCCC	1 cut(s)	381
ApaLI	GTGCAC	1 cut(s)	613
ApeKI	GCWGC	3 cut(s)	116, 119, 191
AspS9I	GGNCC	2 cut(s)	377, 378
AsuHPI	GGTGA	2 cut(s)	60, 326
BaeGI	GKGCMC	2 cut(s)	381, 617
BalI	TGGCCA	3 cut(s)	389, 425, 481
BanII	GRGCYC	2 cut(s)	381, 633
BauI	CACGAG	1 cut(s)	543
Bbv12I	GWGCWC	2 cut(s)	617, 633
BbvI	GCAGC	3 cut(s)	103, 131, 203
BccI	CCATC	2 cut(s)	149, 389
BciVI	GTATCC	1 cut(s)	144
BcoDI	GTCTC	3 cut(s)	98, 503, 635
BfaI	CTAG	1 cut(s)	405
BfmI	CTRYAG	2 cut(s)	117, 563
BfrI	CTTAAG	1 cut(s)	473
BfuI	GTATCC	1 cut(s)	144
BglII	AGATCT	1 cut(s)	76
BisI	GCNGC	4 cut(s)	117, 120, 192, 735
BlpI	GCTNAGC	1 cut(s)	723
BlsI	GCNGC	4 cut(s)	118, 121, 193, 736
BmgT120I	GGNCC	2 cut(s)	377, 378
BmiI	GGNNCC	2 cut(s)	378, 379
BmrI	ACTGGG	2 cut(s)	32, 561
BmsI	GCATC	2 cut(s)	242, 351
BmuI	ACTGGG	2 cut(s)	32, 561
Bpu10I	CCTNAGC	1 cut(s)	501
Bpu1102I	GCTNAGC	1 cut(s)	723
BpuEI	CTTGAG	1 cut(s)	484
BsaJI	CCNNGG	1 cut(s)	750
Bsc4I	CCNNNNNNNGG	2 cut(s)	229, 432
Bse1I	ACTGG	2 cut(s)	27, 556
BseDI	CCNNGG	1 cut(s)	750
BseGI	GGATG	3 cut(s)	103, 160, 274
BseLI	CCNNNNNNNGG	2 cut(s)	229, 432
BseMII	CTCAG	4 cut(s)	515, 605, 630, 714
BseNI	ACTGG	2 cut(s)	27, 556
BseRI	GAGGAG	2 cut(s)	725, 799
BseSI	GKGCMC	2 cut(s)	381, 617
BseXI	GCAGC	3 cut(s)	103, 131, 203
BsgI	GTGCAG	2 cut(s)	109, 210
BshFI	GGCC	4 cut(s)	379, 389, 425, 481
BsiHKAI	GWGCWC	2 cut(s)	617, 633
BslFI	GGGAC	3 cut(s)	473, 601, 746
BslI	CCNNNNNNNGG	2 cut(s)	229, 432
BsmAI	GTCTC	3 cut(s)	98, 503, 635
BsmBI	CGTCTC	1 cut(s)	98
BsmFI	GGGAC	3 cut(s)	473, 601, 746
BsnI	GGCC	4 cut(s)	379, 389, 425, 481
Bsp120I	GGGCCC	1 cut(s)	377
Bsp1286I	GDGCHC	3 cut(s)	381, 617, 633
Bsp143I	GATC	3 cut(s)	76, 415, 655
Bsp1720I	GCTNAGC	1 cut(s)	723
BspACI	CCGC	1 cut(s)	734
BspANI	GGCC	4 cut(s)	379, 389, 425, 481
BspCNI	CTCAG	4 cut(s)	514, 604, 631, 715
BspLI	GGNNCC	2 cut(s)	378, 379
BspMAI	CTGCAG	1 cut(s)	121
BspPI	GGATC	1 cut(s)	650
BspQI	GCTCTTC	1 cut(s)	349
BspTI	CTTAAG	1 cut(s)	473
BsrI	ACTGG	2 cut(s)	27, 556
BssECI	CCNNGG	1 cut(s)	750
BssMI	GATC	3 cut(s)	76, 415, 655
BssSI	CACGAG	1 cut(s)	543
BssT1I	CCWWGG	1 cut(s)	750
Bst2BI	CACGAG	1 cut(s)	543
Bst4CI	ACNGT	1 cut(s)	676
Bst6I	CTCTTC	2 cut(s)	349, 594
BstAFI	CTTAAG	1 cut(s)	473
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstC8I	GCNNGC	2 cut(s)	92, 540
BstDEI	CTNAG	4 cut(s)	501, 591, 639, 723
BstF5I	GGATG	3 cut(s)	103, 160, 274
BstKTI	GATC	3 cut(s)	79, 418, 658
BstMAI	GTCTC	3 cut(s)	98, 503, 635
BstMBI	GATC	3 cut(s)	76, 415, 655
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstSFI	CTRYAG	2 cut(s)	117, 563
BstSLI	GKGCMC	2 cut(s)	381, 617
BstV1I	GCAGC	3 cut(s)	103, 131, 203
BstX2I	RGATCY	1 cut(s)	76
BstYI	RGATCY	1 cut(s)	76
BsuI	GTATCC	1 cut(s)	144
BsuRI	GGCC	4 cut(s)	379, 389, 425, 481
BtsCI	GGATG	3 cut(s)	103, 160, 274
BtsI	GCAGTG	1 cut(s)	169
BtsIMutI	CAGTG	3 cut(s)	159, 169, 681
Cac8I	GCNNGC	2 cut(s)	92, 540
CaiI	CAGNNNCTG	1 cut(s)	571
Cfr13I	GGNCC	2 cut(s)	377, 378
CspCI	CAANNNNNGTGG	2 cut(s)	649, 684
CviAII	CATG	3 cut(s)	185, 325, 421
DdeI	CTNAG	4 cut(s)	501, 591, 639, 723
DpnI	GATC	3 cut(s)	78, 417, 657
DpnII	GATC	3 cut(s)	76, 415, 655
EaeI	YGGCCR	3 cut(s)	387, 423, 479
Eam1104I	CTCTTC	2 cut(s)	349, 594
EarI	CTCTTC	2 cut(s)	349, 594
Ecl136II	GAGCTC	1 cut(s)	631
Eco130I	CCWWGG	1 cut(s)	750
Eco24I	GRGCYC	2 cut(s)	381, 633
Eco53kI	GAGCTC	1 cut(s)	631
EcoICRI	GAGCTC	1 cut(s)	631
EcoO109I	RGGNCCY	1 cut(s)	377
EcoT14I	CCWWGG	1 cut(s)	750
EcoT38I	GRGCYC	2 cut(s)	381, 633
ErhI	CCWWGG	1 cut(s)	750
Esp3I	CGTCTC	1 cut(s)	98
FaeI	CATG	3 cut(s)	188, 328, 424
FalI	AAGNNNNNCTT	2 cut(s)	438, 470
FaqI	GGGAC	3 cut(s)	473, 601, 746
FatI	CATG	3 cut(s)	184, 324, 420
Fnu4HI	GCNGC	4 cut(s)	117, 120, 192, 735
FokI	GGATG	3 cut(s)	110, 167, 281
FriOI	GRGCYC	2 cut(s)	381, 633
Fsp4HI	GCNGC	4 cut(s)	117, 120, 192, 735
FspBI	CTAG	1 cut(s)	405
GluI	GCNGC	4 cut(s)	117, 120, 192, 735
HaeIII	GGCC	4 cut(s)	379, 389, 425, 481
Hin1II	CATG	3 cut(s)	188, 328, 424
HindIII	AAGCTT	1 cut(s)	452
HinfI	GANTC	6 cut(s)	63, 331, 469, 511, 578, 589
HphI	GGTGA	2 cut(s)	60, 326
Hpy166II	GTNNAC	2 cut(s)	274, 615
Hpy188I	TCNGA	2 cut(s)	573, 594
Hpy188III	TCNNGA	6 cut(s)	60, 152, 212, 266, 413, 515
Hpy8I	GTNNAC	2 cut(s)	274, 615
HpyAV	CCTTC	1 cut(s)	25
HpyCH4III	ACNGT	1 cut(s)	676
HpyCH4IV	ACGT	1 cut(s)	491
HpyCH4V	TGCA	5 cut(s)	90, 119, 191, 287, 615
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	4 cut(s)	501, 591, 639, 723
HpySE526I	ACGT	1 cut(s)	491
Hsp92II	CATG	3 cut(s)	188, 328, 424
Kzo9I	GATC	3 cut(s)	76, 415, 655
LguI	GCTCTTC	1 cut(s)	349
LmnI	GCTCC	1 cut(s)	636
Lsp1109I	GCAGC	3 cut(s)	103, 131, 203
LweI	GCATC	2 cut(s)	242, 351
MaeI	CTAG	1 cut(s)	405
MaeII	ACGT	1 cut(s)	491
MaeIII	GTNAC	2 cut(s)	319, 492
MalI	GATC	3 cut(s)	78, 417, 657
MboI	GATC	3 cut(s)	76, 415, 655
MboII	GAAGA	4 cut(s)	86, 336, 573, 611
MflI	RGATCY	1 cut(s)	76
MhlI	GDGCHC	3 cut(s)	381, 617, 633
MlsI	TGGCCA	3 cut(s)	389, 425, 481
MluCI	AATT	1 cut(s)	645
MluNI	TGGCCA	3 cut(s)	389, 425, 481
MlyI	GAGTC	3 cut(s)	340, 505, 583
MnlI	CCTC	6 cut(s)	459, 599, 693, 703, 712, 777
Mox20I	TGGCCA	3 cut(s)	389, 425, 481
MscI	TGGCCA	3 cut(s)	389, 425, 481
MseI	TTAA	5 cut(s)	15, 176, 197, 450, 474
MslI	CAYNNNNRTG	2 cut(s)	282, 309
Msp20I	TGGCCA	3 cut(s)	389, 425, 481
MspCI	CTTAAG	1 cut(s)	473
MwoI	GCNNNNNNNGC	1 cut(s)	293
NdeII	GATC	3 cut(s)	76, 415, 655
NlaIII	CATG	3 cut(s)	188, 328, 424
NlaIV	GGNNCC	2 cut(s)	378, 379
PciSI	GCTCTTC	1 cut(s)	349
PfeI	GAWTC	3 cut(s)	63, 469, 578
PflFI	GACNNNGTC	1 cut(s)	758
PkrI	GCNGC	4 cut(s)	118, 121, 193, 736
PleI	GAGTC	3 cut(s)	339, 505, 583
PpsI	GAGTC	3 cut(s)	339, 505, 583
PsiI	TTATAA	1 cut(s)	147
Psp124BI	GAGCTC	1 cut(s)	633
Psp1406I	AACGTT	1 cut(s)	491
PspN4I	GGNNCC	2 cut(s)	378, 379
PspOMI	GGGCCC	1 cut(s)	377
PspPI	GGNCC	2 cut(s)	377, 378
PstI	CTGCAG	1 cut(s)	121
PstNI	CAGNNNCTG	1 cut(s)	571
PsuI	RGATCY	1 cut(s)	76
PsyI	GACNNNGTC	1 cut(s)	758
RseI	CAYNNNNRTG	2 cut(s)	282, 309
SacI	GAGCTC	1 cut(s)	633
SapI	GCTCTTC	1 cut(s)	349
SaqAI	TTAA	5 cut(s)	15, 176, 197, 450, 474
SatI	GCNGC	4 cut(s)	117, 120, 192, 735
Sau3AI	GATC	3 cut(s)	76, 415, 655
Sau96I	GGNCC	2 cut(s)	377, 378
SchI	GAGTC	3 cut(s)	340, 505, 583
SduI	GDGCHC	3 cut(s)	381, 617, 633
SfaNI	GCATC	2 cut(s)	242, 351
SfcI	CTRYAG	2 cut(s)	117, 563
SmiMI	CAYNNNNRTG	2 cut(s)	282, 309
SmlI	CTYRAG	2 cut(s)	463, 473
SmoI	CTYRAG	2 cut(s)	463, 473
Sse9I	AATT	1 cut(s)	645
SsiI	CCGC	1 cut(s)	734
SspMI	CTAG	1 cut(s)	405
SstI	GAGCTC	1 cut(s)	633
StyI	CCWWGG	1 cut(s)	750
TaaI	ACNGT	1 cut(s)	676
TaiI	ACGT	1 cut(s)	494
TaqII	GACCGA	1 cut(s)	71
TasI	AATT	1 cut(s)	645
TauI	GCSGC	1 cut(s)	737
TfiI	GAWTC	3 cut(s)	63, 469, 578
Tru1I	TTAA	5 cut(s)	15, 176, 197, 450, 474
Tru9I	TTAA	5 cut(s)	15, 176, 197, 450, 474
TscAI	CASTG	3 cut(s)	166, 176, 681
TseI	GCWGC	3 cut(s)	116, 119, 191
TspDTI	ATGAA	2 cut(s)	248, 258
TspRI	CASTG	3 cut(s)	166, 176, 681
Tth111I	GACNNNGTC	1 cut(s)	758
Vha464I	CTTAAG	1 cut(s)	473
VneI	GTGCAC	1 cut(s)	613
XspI	CTAG	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.