Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000907.1

Orthogroup ID

OG0003161

Physical Location & Seq

Genomic Coordinates Forward (+)

71779 .. 72258

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000907.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

atgataggtagttacaggacaggctttggccgtactgatgtgatgcagagtcctacaagctcttctgctgttattgagtttgagatgctgtgccacaaggggcccatctcggccatagctttccaccctagtaatcgtgatctcatggccacatctgggaaagagaaaaaagttaagctttgggacatgaggaatcttaagtggccactccaaacgttaccaggtcaggcagagactctggatttcagtcaaaagggtctgctcgctcgtggaactgggtcttttctacaggttctgagagattcttctgggactcagaaatacgagaaatatatgactcatccattagttaagggttaccaaatagaaaaggtgttgcttcgaccatatgaagatgtttatgcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005732 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BING4CT WD40

Protein Analysis

135

Amino Acids

15.23

Weight (kDa)

9.38

Isoelectric Point (pI)

40.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10530
fragaria_vesca	FvH4_7g06900 FvH4_7g06900
malus_domestica	MD07G1075700.v1.1 MD13G1165600.v1.1
prunus_persica	Prupe.2G096600_v2.0.a1 Prupe.2G096600_v2.0.a1
pyrus_communis	pycom02g20600 pycom07g05980 pycom13g14170
rosa_chinensis	RchiOBHm_Chr1g0336741 RchiOBHm_Chr1g0336801 RchiOBHm_Chr1g0336811 RchiOBHm_Chr1g0336821
rosa_laevigata	RLG00000029332 RLG00000029335 RLG00000029337
rosa_multiflora	Rmu_sc0000907.1_g000012 Rmu_sc0000907.1_g000017 Rmu_sc0000907.1_g000032 Rmu_sc0000907.1_g000033 Rmu_sc0011778.1_g000010
rosa_roxburghii	Rroxscaffold_4G00315350
rosa_rugosa	Rorug01G0127500 Rorug01G0127800 Rorug01G0127900
rosa_samantha	Rh1AG148700 Rh1AG148900 Rh1BG116800 Rh1BG116900 Rh1CG140100 Rh1DG155500 Rh1DG156000 Rh1DG156100 Rh5AG191600
rosa_wichuraiana	Rw1G012000 Rw1G012010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	215
AcoI	YGGCCR	4 cut(s)	28, 111, 147, 203
AfaI	GTAC	1 cut(s)	34
AfiI	CCNNNNNNNGG	1 cut(s)	156
AflII	CTTAAG	1 cut(s)	197
AjnI	CCWGG	1 cut(s)	220
AluBI	AGCT	3 cut(s)	60, 119, 178
AluI	AGCT	3 cut(s)	60, 119, 178
Alw26I	GTCTC	1 cut(s)	227
AlwNI	CAGNNNCTG	1 cut(s)	295
AoxI	GGCC	5 cut(s)	28, 101, 111, 147, 203
ApaI	GGGCCC	1 cut(s)	105
AspS9I	GGNCC	2 cut(s)	101, 102
BaeGI	GKGCMC	1 cut(s)	105
BalI	TGGCCA	2 cut(s)	149, 205
BanII	GRGCYC	1 cut(s)	105
BauI	CACGAG	1 cut(s)	267
BccI	CCATC	1 cut(s)	113
BceAI	ACGGC	1 cut(s)	15
BciT130I	CCWGG	1 cut(s)	222
BcoDI	GTCTC	1 cut(s)	227
BfaI	CTAG	1 cut(s)	129
BfmI	CTRYAG	1 cut(s)	287
BfrI	CTTAAG	1 cut(s)	197
Bme1390I	CCNGG	1 cut(s)	222
BmgT120I	GGNCC	2 cut(s)	101, 102
BmiI	GGNNCC	2 cut(s)	102, 103
BmrFI	CCNGG	1 cut(s)	222
BmrI	ACTGGG	1 cut(s)	285
BmsI	GCATC	2 cut(s)	33, 75
BmuI	ACTGGG	1 cut(s)	285
Bsc4I	CCNNNNNNNGG	1 cut(s)	156
Bse1I	ACTGG	1 cut(s)	280
BseBI	CCWGG	1 cut(s)	222
BseGI	GGATG	1 cut(s)	340
BseLI	CCNNNNNNNGG	1 cut(s)	156
BseMII	CTCAG	2 cut(s)	287, 329
BseNI	ACTGG	1 cut(s)	280
BseSI	GKGCMC	1 cut(s)	105
BshFI	GGCC	5 cut(s)	30, 103, 113, 149, 205
BslFI	GGGAC	2 cut(s)	197, 325
BslI	CCNNNNNNNGG	1 cut(s)	156
BsmAI	GTCTC	1 cut(s)	227
BsmFI	GGGAC	2 cut(s)	197, 325
BsnI	GGCC	5 cut(s)	30, 103, 113, 149, 205
Bsp120I	GGGCCC	1 cut(s)	101
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	1 cut(s)	139
BspANI	GGCC	5 cut(s)	30, 103, 113, 149, 205
BspCNI	CTCAG	2 cut(s)	288, 328
BspLI	GGNNCC	2 cut(s)	102, 103
BspQI	GCTCTTC	1 cut(s)	67
BspTI	CTTAAG	1 cut(s)	197
BsrI	ACTGG	1 cut(s)	280
BssMI	GATC	1 cut(s)	139
BssSI	CACGAG	1 cut(s)	267
Bst2BI	CACGAG	1 cut(s)	267
Bst2UI	CCWGG	1 cut(s)	222
Bst6I	CTCTTC	1 cut(s)	67
BstAFI	CTTAAG	1 cut(s)	197
BstC8I	GCNNGC	1 cut(s)	264
BstDEI	CTNAG	2 cut(s)	296, 315
BstEII	GGTNACC	1 cut(s)	356
BstF5I	GGATG	1 cut(s)	340
BstKTI	GATC	1 cut(s)	142
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	1 cut(s)	139
BstNI	CCWGG	1 cut(s)	222
BstPI	GGTNACC	1 cut(s)	356
BstSCI	CCNGG	1 cut(s)	220
BstSFI	CTRYAG	1 cut(s)	287
BstSLI	GKGCMC	1 cut(s)	105
BsuRI	GGCC	5 cut(s)	30, 103, 113, 149, 205
BtsCI	GGATG	1 cut(s)	340
Cac8I	GCNNGC	1 cut(s)	264
CaiI	CAGNNNCTG	1 cut(s)	295
Cfr13I	GGNCC	2 cut(s)	101, 102
CsiI	ACCWGGT	1 cut(s)	220
Csp6I	GTAC	1 cut(s)	33
CviAII	CATG	2 cut(s)	145, 187
CviJI	RGCY	9 cut(s)	24, 30, 60, 103, 113, 119, 149, 178, 205
CviKI_1	RGCY	9 cut(s)	24, 30, 60, 103, 113, 119, 149, 178, 205
CviQI	GTAC	1 cut(s)	33
DdeI	CTNAG	2 cut(s)	296, 315
DpnI	GATC	1 cut(s)	141
DpnII	GATC	1 cut(s)	139
EaeI	YGGCCR	4 cut(s)	28, 111, 147, 203
Eam1104I	CTCTTC	1 cut(s)	67
EarI	CTCTTC	1 cut(s)	67
Eco24I	GRGCYC	1 cut(s)	105
Eco91I	GGTNACC	1 cut(s)	356
EcoO109I	RGGNCCY	1 cut(s)	101
EcoO65I	GGTNACC	1 cut(s)	356
EcoRII	CCWGG	1 cut(s)	220
EcoT22I	ATGCAT	1 cut(s)	406
EcoT38I	GRGCYC	1 cut(s)	105
FaeI	CATG	2 cut(s)	148, 190
FaiI	YATR	9 cut(s)	116, 146, 188, 333, 335, 388, 390, 402, 406
FalI	AAGNNNNNCTT	2 cut(s)	162, 194
FaqI	GGGAC	2 cut(s)	197, 325
FatI	CATG	2 cut(s)	144, 186
FauNDI	CATATG	1 cut(s)	388
FokI	GGATG	1 cut(s)	327
FriOI	GRGCYC	1 cut(s)	105
FspBI	CTAG	1 cut(s)	129
HaeIII	GGCC	5 cut(s)	30, 103, 113, 149, 205
Hin1II	CATG	2 cut(s)	148, 190
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	6 cut(s)	49, 193, 235, 302, 313, 337
Hpy188I	TCNGA	2 cut(s)	297, 318
Hpy188III	TCNNGA	2 cut(s)	137, 239
HpyCH4IV	ACGT	1 cut(s)	215
HpyCH4V	TGCA	2 cut(s)	46, 404
HpyF3I	CTNAG	2 cut(s)	296, 315
HpySE526I	ACGT	1 cut(s)	215
Hsp92II	CATG	2 cut(s)	148, 190
Kzo9I	GATC	1 cut(s)	139
LguI	GCTCTTC	1 cut(s)	67
LpnPI	CCDG	9 cut(s)	6, 141, 207, 212, 224, 234, 261, 275, 294
LweI	GCATC	2 cut(s)	33, 75
MabI	ACCWGGT	1 cut(s)	220
MaeI	CTAG	1 cut(s)	129
MaeII	ACGT	1 cut(s)	215
MaeIII	GTNAC	3 cut(s)	11, 216, 356
MalI	GATC	1 cut(s)	141
MboI	GATC	1 cut(s)	139
MboII	GAAGA	3 cut(s)	54, 297, 404
MhlI	GDGCHC	1 cut(s)	105
MlsI	TGGCCA	2 cut(s)	149, 205
MluNI	TGGCCA	2 cut(s)	149, 205
MlyI	GAGTC	4 cut(s)	58, 229, 307, 331
MnlI	CCTC	1 cut(s)	183
Mox20I	TGGCCA	2 cut(s)	149, 205
Mph1103I	ATGCAT	1 cut(s)	406
MscI	TGGCCA	2 cut(s)	149, 205
MseI	TTAA	3 cut(s)	174, 198, 351
Msp20I	TGGCCA	2 cut(s)	149, 205
MspCI	CTTAAG	1 cut(s)	197
MspR9I	CCNGG	1 cut(s)	222
MvaI	CCWGG	1 cut(s)	222
NdeI	CATATG	1 cut(s)	388
NdeII	GATC	1 cut(s)	139
NlaIII	CATG	2 cut(s)	148, 190
NlaIV	GGNNCC	2 cut(s)	102, 103
NmeAIII	GCCGAG	1 cut(s)	89
NsiI	ATGCAT	1 cut(s)	406
PciSI	GCTCTTC	1 cut(s)	67
PfeI	GAWTC	2 cut(s)	193, 302
PleI	GAGTC	4 cut(s)	57, 229, 307, 331
PpsI	GAGTC	4 cut(s)	57, 229, 307, 331
Psp1406I	AACGTT	1 cut(s)	215
Psp6I	CCWGG	1 cut(s)	220
PspEI	GGTNACC	1 cut(s)	356
PspGI	CCWGG	1 cut(s)	220
PspN4I	GGNNCC	2 cut(s)	102, 103
PspOMI	GGGCCC	1 cut(s)	101
PspPI	GGNCC	2 cut(s)	101, 102
PstNI	CAGNNNCTG	1 cut(s)	295
RsaI	GTAC	1 cut(s)	34
RsaNI	GTAC	1 cut(s)	33
SapI	GCTCTTC	1 cut(s)	67
SaqAI	TTAA	3 cut(s)	174, 198, 351
Sau3AI	GATC	1 cut(s)	139
Sau96I	GGNCC	2 cut(s)	101, 102
SchI	GAGTC	4 cut(s)	58, 229, 307, 331
ScrFI	CCNGG	1 cut(s)	222
SduI	GDGCHC	1 cut(s)	105
SetI	ASST	8 cut(s)	10, 62, 121, 180, 218, 226, 294, 375
SexAI	ACCWGGT	1 cut(s)	220
SfaNI	GCATC	2 cut(s)	33, 75
SfcI	CTRYAG	1 cut(s)	287
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
SspMI	CTAG	1 cut(s)	129
StyD4I	CCNGG	1 cut(s)	220
TaiI	ACGT	1 cut(s)	218
TaqI	TCGA	1 cut(s)	382
TfiI	GAWTC	2 cut(s)	193, 302
Tru1I	TTAA	3 cut(s)	174, 198, 351
Tru9I	TTAA	3 cut(s)	174, 198, 351
TspDTI	ATGAA	1 cut(s)	405
Vha464I	CTTAAG	1 cut(s)	197
XspI	CTAG	1 cut(s)	129
Zsp2I	ATGCAT	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.