Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000907.1

Orthogroup ID

OG0003161

Physical Location & Seq

Genomic Coordinates Forward (+)

160123 .. 160446

Gene Structure 324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000907.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

atgctgtgccacaaggggcccatctcggccatagctttccaccctagtaatcgtgatctcatggccacatctgggaaagagaaaaaagttaagctttgggacatgaggaatcttaagtggccactccaaacgttaccaggtcaggcagagactctggatttcagtcaaaagggtctgctcgctcgtggaactgggtcttttctacaggttctgagagattcttctgggactcagaagtacgagaaatatatgactcatccattagttaaaggttaccaaatagaaaaggtgttgcttcgaccatatgaagatgtttatgcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005732 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BING4CT WD40

Protein Analysis

107

Amino Acids

12.2

Weight (kDa)

9.55

Isoelectric Point (pI)

35.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10530
fragaria_vesca	FvH4_7g06900 FvH4_7g06900
malus_domestica	MD07G1075700.v1.1 MD13G1165600.v1.1
prunus_persica	Prupe.2G096600_v2.0.a1 Prupe.2G096600_v2.0.a1
pyrus_communis	pycom02g20600 pycom07g05980 pycom13g14170
rosa_chinensis	RchiOBHm_Chr1g0336741 RchiOBHm_Chr1g0336801 RchiOBHm_Chr1g0336811 RchiOBHm_Chr1g0336821
rosa_laevigata	RLG00000029332 RLG00000029335 RLG00000029337
rosa_multiflora	Rmu_sc0000907.1_g000012 Rmu_sc0000907.1_g000017 Rmu_sc0000907.1_g000032 Rmu_sc0000907.1_g000033 Rmu_sc0011778.1_g000010
rosa_roxburghii	Rroxscaffold_4G00315350
rosa_rugosa	Rorug01G0127500 Rorug01G0127800 Rorug01G0127900
rosa_samantha	Rh1AG148700 Rh1AG148900 Rh1BG116800 Rh1BG116900 Rh1CG140100 Rh1DG155500 Rh1DG156000 Rh1DG156100 Rh5AG191600
rosa_wichuraiana	Rw1G012000 Rw1G012010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	131
AcoI	YGGCCR	3 cut(s)	27, 63, 119
AfaI	GTAC	1 cut(s)	239
AfiI	CCNNNNNNNGG	1 cut(s)	72
AflII	CTTAAG	1 cut(s)	113
AjnI	CCWGG	1 cut(s)	136
AluBI	AGCT	2 cut(s)	35, 94
AluI	AGCT	2 cut(s)	35, 94
Alw26I	GTCTC	1 cut(s)	143
AlwNI	CAGNNNCTG	1 cut(s)	211
AoxI	GGCC	4 cut(s)	17, 27, 63, 119
ApaI	GGGCCC	1 cut(s)	21
AspS9I	GGNCC	2 cut(s)	17, 18
BaeGI	GKGCMC	1 cut(s)	21
BalI	TGGCCA	2 cut(s)	65, 121
BanII	GRGCYC	1 cut(s)	21
BauI	CACGAG	1 cut(s)	183
BccI	CCATC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	138
BcoDI	GTCTC	1 cut(s)	143
BfaI	CTAG	1 cut(s)	45
BfmI	CTRYAG	1 cut(s)	203
BfrI	CTTAAG	1 cut(s)	113
Bme1390I	CCNGG	1 cut(s)	138
BmgT120I	GGNCC	2 cut(s)	17, 18
BmiI	GGNNCC	2 cut(s)	18, 19
BmrFI	CCNGG	1 cut(s)	138
BmrI	ACTGGG	1 cut(s)	201
BmuI	ACTGGG	1 cut(s)	201
Bsc4I	CCNNNNNNNGG	1 cut(s)	72
Bse1I	ACTGG	1 cut(s)	196
BseBI	CCWGG	1 cut(s)	138
BseGI	GGATG	1 cut(s)	256
BseLI	CCNNNNNNNGG	1 cut(s)	72
BseMII	CTCAG	2 cut(s)	203, 245
BseNI	ACTGG	1 cut(s)	196
BseSI	GKGCMC	1 cut(s)	21
BshFI	GGCC	4 cut(s)	19, 29, 65, 121
BslFI	GGGAC	2 cut(s)	113, 241
BslI	CCNNNNNNNGG	1 cut(s)	72
BsmAI	GTCTC	1 cut(s)	143
BsmFI	GGGAC	2 cut(s)	113, 241
BsnI	GGCC	4 cut(s)	19, 29, 65, 121
Bsp120I	GGGCCC	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	1 cut(s)	55
BspANI	GGCC	4 cut(s)	19, 29, 65, 121
BspCNI	CTCAG	2 cut(s)	204, 244
BspLI	GGNNCC	2 cut(s)	18, 19
BspTI	CTTAAG	1 cut(s)	113
BsrI	ACTGG	1 cut(s)	196
BssMI	GATC	1 cut(s)	55
BssSI	CACGAG	1 cut(s)	183
Bst2BI	CACGAG	1 cut(s)	183
Bst2UI	CCWGG	1 cut(s)	138
BstAFI	CTTAAG	1 cut(s)	113
BstC8I	GCNNGC	1 cut(s)	180
BstDEI	CTNAG	2 cut(s)	212, 231
BstEII	GGTNACC	1 cut(s)	272
BstF5I	GGATG	1 cut(s)	256
BstKTI	GATC	1 cut(s)	58
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	1 cut(s)	55
BstNI	CCWGG	1 cut(s)	138
BstPI	GGTNACC	1 cut(s)	272
BstSCI	CCNGG	1 cut(s)	136
BstSFI	CTRYAG	1 cut(s)	203
BstSLI	GKGCMC	1 cut(s)	21
BsuRI	GGCC	4 cut(s)	19, 29, 65, 121
BtsCI	GGATG	1 cut(s)	256
Cac8I	GCNNGC	1 cut(s)	180
CaiI	CAGNNNCTG	1 cut(s)	211
Cfr13I	GGNCC	2 cut(s)	17, 18
CsiI	ACCWGGT	1 cut(s)	136
Csp6I	GTAC	1 cut(s)	238
CviAII	CATG	2 cut(s)	61, 103
CviJI	RGCY	6 cut(s)	19, 29, 35, 65, 94, 121
CviKI_1	RGCY	6 cut(s)	19, 29, 35, 65, 94, 121
CviQI	GTAC	1 cut(s)	238
DdeI	CTNAG	2 cut(s)	212, 231
DpnI	GATC	1 cut(s)	57
DpnII	GATC	1 cut(s)	55
EaeI	YGGCCR	3 cut(s)	27, 63, 119
Eco24I	GRGCYC	1 cut(s)	21
Eco91I	GGTNACC	1 cut(s)	272
EcoO109I	RGGNCCY	1 cut(s)	17
EcoO65I	GGTNACC	1 cut(s)	272
EcoRII	CCWGG	1 cut(s)	136
EcoT22I	ATGCAT	1 cut(s)	322
EcoT38I	GRGCYC	1 cut(s)	21
FaeI	CATG	2 cut(s)	64, 106
FaiI	YATR	9 cut(s)	32, 62, 104, 249, 251, 304, 306, 318, 322
FalI	AAGNNNNNCTT	2 cut(s)	78, 110
FaqI	GGGAC	2 cut(s)	113, 241
FatI	CATG	2 cut(s)	60, 102
FauNDI	CATATG	1 cut(s)	304
FokI	GGATG	1 cut(s)	243
FriOI	GRGCYC	1 cut(s)	21
FspBI	CTAG	1 cut(s)	45
HaeIII	GGCC	4 cut(s)	19, 29, 65, 121
Hin1II	CATG	2 cut(s)	64, 106
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	5 cut(s)	109, 151, 218, 229, 253
Hpy188I	TCNGA	2 cut(s)	213, 234
Hpy188III	TCNNGA	2 cut(s)	53, 155
HpyCH4IV	ACGT	1 cut(s)	131
HpyCH4V	TGCA	1 cut(s)	320
HpyF3I	CTNAG	2 cut(s)	212, 231
HpySE526I	ACGT	1 cut(s)	131
Hsp92II	CATG	2 cut(s)	64, 106
Kzo9I	GATC	1 cut(s)	55
LpnPI	CCDG	8 cut(s)	57, 123, 128, 140, 150, 177, 191, 210
MabI	ACCWGGT	1 cut(s)	136
MaeI	CTAG	1 cut(s)	45
MaeII	ACGT	1 cut(s)	131
MaeIII	GTNAC	2 cut(s)	132, 272
MalI	GATC	1 cut(s)	57
MboI	GATC	1 cut(s)	55
MboII	GAAGA	2 cut(s)	213, 320
MhlI	GDGCHC	1 cut(s)	21
MlsI	TGGCCA	2 cut(s)	65, 121
MluNI	TGGCCA	2 cut(s)	65, 121
MlyI	GAGTC	3 cut(s)	145, 223, 247
MnlI	CCTC	1 cut(s)	99
Mox20I	TGGCCA	2 cut(s)	65, 121
Mph1103I	ATGCAT	1 cut(s)	322
MscI	TGGCCA	2 cut(s)	65, 121
MseI	TTAA	3 cut(s)	90, 114, 267
Msp20I	TGGCCA	2 cut(s)	65, 121
MspCI	CTTAAG	1 cut(s)	113
MspR9I	CCNGG	1 cut(s)	138
MvaI	CCWGG	1 cut(s)	138
NdeI	CATATG	1 cut(s)	304
NdeII	GATC	1 cut(s)	55
NlaIII	CATG	2 cut(s)	64, 106
NlaIV	GGNNCC	2 cut(s)	18, 19
NmeAIII	GCCGAG	1 cut(s)	5
NsiI	ATGCAT	1 cut(s)	322
PfeI	GAWTC	2 cut(s)	109, 218
PleI	GAGTC	3 cut(s)	145, 223, 247
PpsI	GAGTC	3 cut(s)	145, 223, 247
Psp1406I	AACGTT	1 cut(s)	131
Psp6I	CCWGG	1 cut(s)	136
PspEI	GGTNACC	1 cut(s)	272
PspGI	CCWGG	1 cut(s)	136
PspN4I	GGNNCC	2 cut(s)	18, 19
PspOMI	GGGCCC	1 cut(s)	17
PspPI	GGNCC	2 cut(s)	17, 18
PstNI	CAGNNNCTG	1 cut(s)	211
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
SaqAI	TTAA	3 cut(s)	90, 114, 267
Sau3AI	GATC	1 cut(s)	55
Sau96I	GGNCC	2 cut(s)	17, 18
SchI	GAGTC	3 cut(s)	145, 223, 247
ScrFI	CCNGG	1 cut(s)	138
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	7 cut(s)	37, 96, 134, 142, 210, 274, 291
SexAI	ACCWGGT	1 cut(s)	136
SfcI	CTRYAG	1 cut(s)	203
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
SspMI	CTAG	1 cut(s)	45
StyD4I	CCNGG	1 cut(s)	136
TaiI	ACGT	1 cut(s)	134
TaqI	TCGA	1 cut(s)	298
TfiI	GAWTC	2 cut(s)	109, 218
Tru1I	TTAA	3 cut(s)	90, 114, 267
Tru9I	TTAA	3 cut(s)	90, 114, 267
TspDTI	ATGAA	1 cut(s)	321
Vha464I	CTTAAG	1 cut(s)	113
XspI	CTAG	1 cut(s)	45
Zsp2I	ATGCAT	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.