Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003161

Physical Location & Seq

Genomic Coordinates Forward (+)

21810125 .. 21810816

Gene Structure 692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0127800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGTCAGTGAATATCCAAAGGCGTACTTTAGGTTTAGAAAGAGAAGTACGGCGAAAGACAAGACAGCTGCATTCTAAGAAGCTGTGTTCCCAACTTAATCGTAGAATACCCATCACTTTGATGCAACATAATGGAAGACCCATAGGTCCATATGCAGAACTATTTGTGAATGATATCAGCTTAATAGTTAGGAACCTTGCACCTCTGAATAGCAAGTTCGACTTTAATATGTCCCTCCCTTGGGTCGAATACTATGTAAACAAGATGTGTATGGCAGCATTTTTAAAATTCCGTTATGGTCTAAAGAAGCATTTTGAGAAATTCCCTACAGTAGATGAAGCACGAGCAAACAAGCCTGAAAAAGTTAAGACTCAAGCAGAGTGGGATTTTCTATGTACTAGTTTTTCTAGTGAAGAGTTACATGTATCTAGTGTTTCTTTTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005732 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BING4CT WD40

Protein Analysis

148

Amino Acids

17.43

Weight (kDa)

9.82

Isoelectric Point (pI)

50.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10530
fragaria_vesca	FvH4_7g06900 FvH4_7g06900
malus_domestica	MD07G1075700.v1.1 MD13G1165600.v1.1
prunus_persica	Prupe.2G096600_v2.0.a1 Prupe.2G096600_v2.0.a1
pyrus_communis	pycom02g20600 pycom07g05980 pycom13g14170
rosa_chinensis	RchiOBHm_Chr1g0336741 RchiOBHm_Chr1g0336801 RchiOBHm_Chr1g0336811 RchiOBHm_Chr1g0336821
rosa_laevigata	RLG00000029332 RLG00000029335 RLG00000029337
rosa_multiflora	Rmu_sc0000907.1_g000012 Rmu_sc0000907.1_g000017 Rmu_sc0000907.1_g000032 Rmu_sc0000907.1_g000033 Rmu_sc0011778.1_g000010
rosa_roxburghii	Rroxscaffold_4G00315350
rosa_rugosa	Rorug01G0127500 Rorug01G0127800 Rorug01G0127900
rosa_samantha	Rh1AG148700 Rh1AG148900 Rh1BG116800 Rh1BG116900 Rh1CG140100 Rh1DG155500 Rh1DG156000 Rh1DG156100 Rh5AG191600
rosa_wichuraiana	Rw1G012000 Rw1G012010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	144
AcsI	RAATTY	2 cut(s)	287, 320
AfaI	GTAC	3 cut(s)	25, 48, 397
AfiI	CCNNNNNNNGG	2 cut(s)	240, 241
AflIII	ACRYGT	1 cut(s)	421
AhlI	ACTAGT	1 cut(s)	398
AluBI	AGCT	3 cut(s)	67, 82, 180
AluI	AGCT	3 cut(s)	67, 82, 180
ApeKI	GCWGC	2 cut(s)	67, 275
ApoI	RAATTY	2 cut(s)	287, 320
AspS9I	GGNCC	1 cut(s)	146
AvaII	GGWCC	1 cut(s)	146
BauI	CACGAG	1 cut(s)	342
BbsI	GAAGAC	1 cut(s)	142
BbvI	GCAGC	2 cut(s)	54, 287
BccI	CCATC	1 cut(s)	119
BceAI	ACGGC	1 cut(s)	65
BcuI	ACTAGT	1 cut(s)	398
BfaI	CTAG	3 cut(s)	399, 408, 429
BfmI	CTRYAG	1 cut(s)	327
BisI	GCNGC	2 cut(s)	68, 276
BlsI	GCNGC	2 cut(s)	69, 277
Bme18I	GGWCC	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	146
BmiI	GGNNCC	1 cut(s)	194
BmsI	GCATC	1 cut(s)	111
BpiI	GAAGAC	1 cut(s)	142
BpuEI	CTTGAG	1 cut(s)	357
BsaJI	CCNNGG	1 cut(s)	239
Bsc4I	CCNNNNNNNGG	2 cut(s)	240, 241
BseDI	CCNNGG	1 cut(s)	239
BseLI	CCNNNNNNNGG	2 cut(s)	240, 241
BseXI	GCAGC	2 cut(s)	54, 287
BslFI	GGGAC	1 cut(s)	217
BslI	CCNNNNNNNGG	2 cut(s)	240, 241
BsmFI	GGGAC	1 cut(s)	217
BsmI	GAATGC	1 cut(s)	70
BspLI	GGNNCC	1 cut(s)	194
BssECI	CCNNGG	1 cut(s)	239
BssSI	CACGAG	1 cut(s)	342
BssT1I	CCWWGG	1 cut(s)	239
Bst2BI	CACGAG	1 cut(s)	342
Bst4CI	ACNGT	1 cut(s)	331
Bst6I	CTCTTC	1 cut(s)	408
BstDEI	CTNAG	1 cut(s)	75
BstNSI	RCATGY	1 cut(s)	425
BstSFI	CTRYAG	1 cut(s)	327
BstV1I	GCAGC	2 cut(s)	54, 287
BstV2I	GAAGAC	1 cut(s)	142
BtsIMutI	CAGTG	1 cut(s)	12
Cfr13I	GGNCC	1 cut(s)	146
Csp6I	GTAC	3 cut(s)	24, 47, 396
CspCI	CAANNNNNGTGG	2 cut(s)	362, 397
CviAII	CATG	1 cut(s)	422
CviJI	RGCY	4 cut(s)	67, 82, 180, 355
CviKI_1	RGCY	4 cut(s)	67, 82, 180, 355
CviQI	GTAC	3 cut(s)	24, 47, 396
DdeI	CTNAG	1 cut(s)	75
DraI	TTTAAA	1 cut(s)	285
DrdI	GACNNNNNNGTC	1 cut(s)	144
DseDI	GACNNNNNNGTC	1 cut(s)	144
Eam1104I	CTCTTC	1 cut(s)	408
EarI	CTCTTC	1 cut(s)	408
Eco130I	CCWWGG	1 cut(s)	239
Eco32I	GATATC	1 cut(s)	175
Eco47I	GGWCC	1 cut(s)	146
EcoRV	GATATC	1 cut(s)	175
EcoT14I	CCWWGG	1 cut(s)	239
ErhI	CCWWGG	1 cut(s)	239
FaeI	CATG	1 cut(s)	425
FalI	AAGNNNNNCTT	4 cut(s)	10, 42, 206, 238
FaqI	GGGAC	1 cut(s)	217
FatI	CATG	1 cut(s)	421
FauNDI	CATATG	1 cut(s)	151
Fnu4HI	GCNGC	2 cut(s)	68, 276
Fsp4HI	GCNGC	2 cut(s)	68, 276
FspBI	CTAG	3 cut(s)	399, 408, 429
GluI	GCNGC	2 cut(s)	68, 276
Hin1II	CATG	1 cut(s)	425
HinfI	GANTC	1 cut(s)	370
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	1 cut(s)	207
Hpy8I	GTNNAC	1 cut(s)	259
HpyCH4III	ACNGT	1 cut(s)	331
HpyCH4V	TGCA	4 cut(s)	70, 124, 155, 200
HpyF3I	CTNAG	1 cut(s)	75
Hsp92II	CATG	1 cut(s)	425
LpnPI	CCDG	1 cut(s)	369
Lsp1109I	GCAGC	2 cut(s)	54, 287
LweI	GCATC	1 cut(s)	111
MaeI	CTAG	3 cut(s)	399, 408, 429
MaeIII	GTNAC	1 cut(s)	417
MboII	GAAGA	2 cut(s)	147, 425
MluCI	AATT	2 cut(s)	287, 320
MlyI	GAGTC	1 cut(s)	364
MnlI	CCTC	2 cut(s)	213, 245
MseI	TTAA	5 cut(s)	96, 182, 225, 284, 366
MslI	CAYNNNNRTG	1 cut(s)	119
MspA1I	CMGCKG	1 cut(s)	67
Mva1269I	GAATGC	1 cut(s)	70
NdeI	CATATG	1 cut(s)	151
NlaIII	CATG	1 cut(s)	425
NlaIV	GGNNCC	1 cut(s)	194
NspI	RCATGY	1 cut(s)	425
PciI	ACATGT	1 cut(s)	421
PctI	GAATGC	1 cut(s)	70
PkrI	GCNGC	2 cut(s)	69, 277
PleI	GAGTC	1 cut(s)	364
PpsI	GAGTC	1 cut(s)	364
PscI	ACATGT	1 cut(s)	421
PspN4I	GGNNCC	1 cut(s)	194
PspPI	GGNCC	1 cut(s)	146
PvuII	CAGCTG	1 cut(s)	67
RsaI	GTAC	3 cut(s)	25, 48, 397
RsaNI	GTAC	3 cut(s)	24, 47, 396
RseI	CAYNNNNRTG	1 cut(s)	119
SaqAI	TTAA	5 cut(s)	96, 182, 225, 284, 366
SatI	GCNGC	2 cut(s)	68, 276
Sau96I	GGNCC	1 cut(s)	146
SchI	GAGTC	1 cut(s)	364
SetI	ASST	7 cut(s)	34, 69, 84, 148, 182, 198, 205
SfaNI	GCATC	1 cut(s)	111
SfcI	CTRYAG	1 cut(s)	327
SinI	GGWCC	1 cut(s)	146
SmiMI	CAYNNNNRTG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	372
SmoI	CTYRAG	1 cut(s)	372
SpeI	ACTAGT	1 cut(s)	398
Sse9I	AATT	2 cut(s)	287, 320
SspMI	CTAG	3 cut(s)	399, 408, 429
StyI	CCWWGG	1 cut(s)	239
TaaI	ACNGT	1 cut(s)	331
TaqI	TCGA	2 cut(s)	219, 246
TasI	AATT	2 cut(s)	287, 320
TatI	WGTACW	1 cut(s)	395
Tru1I	TTAA	5 cut(s)	96, 182, 225, 284, 366
Tru9I	TTAA	5 cut(s)	96, 182, 225, 284, 366
TscAI	CASTG	1 cut(s)	12
TseI	GCWGC	2 cut(s)	67, 275
TspDTI	ATGAA	1 cut(s)	351
TspGWI	ACGGA	1 cut(s)	281
TspRI	CASTG	1 cut(s)	12
VpaK11BI	GGWCC	1 cut(s)	146
XapI	RAATTY	2 cut(s)	287, 320
XceI	RCATGY	1 cut(s)	425
XspI	CTAG	3 cut(s)	399, 408, 429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.