Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0003161

Physical Location & Seq

Genomic Coordinates Forward (+)

26923087 .. 26923389

Gene Structure 303 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G012010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGTGGTGTCCTACAAGCTCTTCTGCTGTTATTGAGATGCTGTGCCACAAGAGGCCCATCTCGGCCATAGCTTTCCACCCTAGTAATCGTGATCTCATGGCCACATCTGGGAAAGAGAAAAAAGTTAAGCTTTGGGACGTGAGGAATCTTAAGTGGCCACTCCAAATGTTACCAGGTCAGGCAGAGACTGGATTTCAGTCAAAAGGGTCTGCTCGCTCGTGGAACTGGGTCTTTTCTACAGGTTCTGAGAGATTCTTCTGGGACTCAAAAGTACGAGAAATATATGACTCATCCATTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005732 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BING4CT WD40

Protein Analysis

100

Amino Acids

11.48

Weight (kDa)

9.56

Isoelectric Point (pI)

55.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_THOC3	PF25174	11 - 51	7.7e-08	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10530
fragaria_vesca	FvH4_7g06900 FvH4_7g06900
malus_domestica	MD07G1075700.v1.1 MD13G1165600.v1.1
prunus_persica	Prupe.2G096600_v2.0.a1 Prupe.2G096600_v2.0.a1
pyrus_communis	pycom02g20600 pycom07g05980 pycom13g14170
rosa_chinensis	RchiOBHm_Chr1g0336741 RchiOBHm_Chr1g0336801 RchiOBHm_Chr1g0336811 RchiOBHm_Chr1g0336821
rosa_laevigata	RLG00000029332 RLG00000029335 RLG00000029337
rosa_multiflora	Rmu_sc0000907.1_g000012 Rmu_sc0000907.1_g000017 Rmu_sc0000907.1_g000032 Rmu_sc0000907.1_g000033 Rmu_sc0011778.1_g000010
rosa_roxburghii	Rroxscaffold_4G00315350
rosa_rugosa	Rorug01G0127500 Rorug01G0127800 Rorug01G0127900
rosa_samantha	Rh1AG148700 Rh1AG148900 Rh1BG116800 Rh1BG116900 Rh1CG140100 Rh1DG155500 Rh1DG156000 Rh1DG156100 Rh5AG191600
rosa_wichuraiana	Rw1G012000 Rw1G012010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	3 cut(s)	63, 99, 155
AfaI	GTAC	1 cut(s)	273
AfiI	CCNNNNNNNGG	1 cut(s)	108
AflII	CTTAAG	1 cut(s)	149
AjiI	CACGTC	1 cut(s)	139
AjnI	CCWGG	1 cut(s)	172
AluBI	AGCT	3 cut(s)	18, 71, 130
AluI	AGCT	3 cut(s)	18, 71, 130
Alw26I	GTCTC	1 cut(s)	179
AlwNI	CAGNNNCTG	2 cut(s)	188, 245
AoxI	GGCC	4 cut(s)	53, 63, 99, 155
AspS9I	GGNCC	1 cut(s)	54
BalI	TGGCCA	2 cut(s)	101, 157
BauI	CACGAG	1 cut(s)	217
BccI	CCATC	1 cut(s)	65
BciT130I	CCWGG	1 cut(s)	174
BcoDI	GTCTC	1 cut(s)	179
BfaI	CTAG	1 cut(s)	81
BfmI	CTRYAG	1 cut(s)	237
BfrI	CTTAAG	1 cut(s)	149
Bme1390I	CCNGG	1 cut(s)	174
BmgBI	CACGTC	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	54
BmrFI	CCNGG	1 cut(s)	174
BmrI	ACTGGG	1 cut(s)	235
BmsI	GCATC	1 cut(s)	27
BmuI	ACTGGG	1 cut(s)	235
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
Bse1I	ACTGG	2 cut(s)	193, 230
BseBI	CCWGG	1 cut(s)	174
BseGI	GGATG	1 cut(s)	290
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseMII	CTCAG	1 cut(s)	237
BseNI	ACTGG	2 cut(s)	193, 230
BshFI	GGCC	4 cut(s)	55, 65, 101, 157
BslFI	GGGAC	2 cut(s)	149, 275
BslI	CCNNNNNNNGG	1 cut(s)	108
BsmAI	GTCTC	1 cut(s)	179
BsmFI	GGGAC	2 cut(s)	149, 275
BsnI	GGCC	4 cut(s)	55, 65, 101, 157
Bsp143I	GATC	1 cut(s)	91
BspANI	GGCC	4 cut(s)	55, 65, 101, 157
BspCNI	CTCAG	1 cut(s)	238
BspQI	GCTCTTC	1 cut(s)	25
BspTI	CTTAAG	1 cut(s)	149
BsrI	ACTGG	2 cut(s)	193, 230
BssMI	GATC	1 cut(s)	91
BssSI	CACGAG	1 cut(s)	217
Bst2BI	CACGAG	1 cut(s)	217
Bst2UI	CCWGG	1 cut(s)	174
Bst6I	CTCTTC	1 cut(s)	25
BstAFI	CTTAAG	1 cut(s)	149
BstC8I	GCNNGC	1 cut(s)	214
BstDEI	CTNAG	1 cut(s)	246
BstF5I	GGATG	1 cut(s)	290
BstKTI	GATC	1 cut(s)	94
BstMAI	GTCTC	1 cut(s)	179
BstMBI	GATC	1 cut(s)	91
BstNI	CCWGG	1 cut(s)	174
BstSCI	CCNGG	1 cut(s)	172
BstSFI	CTRYAG	1 cut(s)	237
BsuRI	GGCC	4 cut(s)	55, 65, 101, 157
BtrI	CACGTC	1 cut(s)	139
BtsCI	GGATG	1 cut(s)	290
Cac8I	GCNNGC	1 cut(s)	214
CaiI	CAGNNNCTG	2 cut(s)	188, 245
Cfr13I	GGNCC	1 cut(s)	54
CsiI	ACCWGGT	1 cut(s)	172
Csp6I	GTAC	1 cut(s)	272
CviAII	CATG	1 cut(s)	97
CviJI	RGCY	7 cut(s)	18, 55, 65, 71, 101, 130, 157
CviKI_1	RGCY	7 cut(s)	18, 55, 65, 71, 101, 130, 157
CviQI	GTAC	1 cut(s)	272
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
EaeI	YGGCCR	3 cut(s)	63, 99, 155
Eam1104I	CTCTTC	1 cut(s)	25
EarI	CTCTTC	1 cut(s)	25
EcoRII	CCWGG	1 cut(s)	172
FaeI	CATG	1 cut(s)	100
FaiI	YATR	4 cut(s)	68, 98, 283, 285
FalI	AAGNNNNNCTT	2 cut(s)	114, 146
FaqI	GGGAC	2 cut(s)	149, 275
FatI	CATG	1 cut(s)	96
FokI	GGATG	1 cut(s)	277
FspBI	CTAG	1 cut(s)	81
HaeIII	GGCC	4 cut(s)	55, 65, 101, 157
Hin1II	CATG	1 cut(s)	100
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	4 cut(s)	145, 252, 263, 287
Hpy188I	TCNGA	1 cut(s)	247
Hpy188III	TCNNGA	1 cut(s)	89
HpyCH4IV	ACGT	1 cut(s)	138
HpyF3I	CTNAG	1 cut(s)	246
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	1 cut(s)	100
Kzo9I	GATC	1 cut(s)	91
LguI	GCTCTTC	1 cut(s)	25
LpnPI	CCDG	8 cut(s)	93, 159, 164, 174, 186, 211, 225, 244
LweI	GCATC	1 cut(s)	27
MabI	ACCWGGT	1 cut(s)	172
MaeI	CTAG	1 cut(s)	81
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	1 cut(s)	168
MalI	GATC	1 cut(s)	93
MboI	GATC	1 cut(s)	91
MboII	GAAGA	2 cut(s)	12, 247
MlsI	TGGCCA	2 cut(s)	101, 157
MluNI	TGGCCA	2 cut(s)	101, 157
MlyI	GAGTC	2 cut(s)	257, 281
MnlI	CCTC	2 cut(s)	45, 135
Mox20I	TGGCCA	2 cut(s)	101, 157
MscI	TGGCCA	2 cut(s)	101, 157
MseI	TTAA	3 cut(s)	126, 150, 301
Msp20I	TGGCCA	2 cut(s)	101, 157
MspCI	CTTAAG	1 cut(s)	149
MspR9I	CCNGG	1 cut(s)	174
MvaI	CCWGG	1 cut(s)	174
NdeII	GATC	1 cut(s)	91
NlaIII	CATG	1 cut(s)	100
NmeAIII	GCCGAG	1 cut(s)	41
PciSI	GCTCTTC	1 cut(s)	25
PfeI	GAWTC	2 cut(s)	145, 252
PleI	GAGTC	2 cut(s)	257, 281
PpsI	GAGTC	2 cut(s)	257, 281
Psp6I	CCWGG	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	172
PspPI	GGNCC	1 cut(s)	54
PstNI	CAGNNNCTG	2 cut(s)	188, 245
RsaI	GTAC	1 cut(s)	273
RsaNI	GTAC	1 cut(s)	272
SapI	GCTCTTC	1 cut(s)	25
SaqAI	TTAA	3 cut(s)	126, 150, 301
Sau3AI	GATC	1 cut(s)	91
Sau96I	GGNCC	1 cut(s)	54
SchI	GAGTC	2 cut(s)	257, 281
ScrFI	CCNGG	1 cut(s)	174
SetI	ASST	6 cut(s)	20, 73, 132, 141, 178, 244
SexAI	ACCWGGT	1 cut(s)	172
SfaNI	GCATC	1 cut(s)	27
SfcI	CTRYAG	1 cut(s)	237
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
SspMI	CTAG	1 cut(s)	81
StyD4I	CCNGG	1 cut(s)	172
TaiI	ACGT	1 cut(s)	141
TfiI	GAWTC	2 cut(s)	145, 252
Tru1I	TTAA	3 cut(s)	126, 150, 301
Tru9I	TTAA	3 cut(s)	126, 150, 301
Vha464I	CTTAAG	1 cut(s)	149
XspI	CTAG	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.