Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0003161

Physical Location & Seq

Genomic Coordinates Forward (+)

20059760 .. 20060080

Gene Structure 321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG116900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGTTTGATCCCACAAAGATTGGCACAGTGAAACCTCCAAGAAAAGAGAAGCCAACAAAGGAGGAGAAGGAAGCTGAGCTGGAAGCCGCTGTTGACGTTGCCAAGGACATTGTCCCAAAGAAGAAGAAAACAATGGGGAGGAGTAAGCCAAGTAAGATGAAGAAGAAGAAGCAGGAGATAATTGCCAATGCCAAGAGACCTTTCTTGGAACAACAAATGAAAGAGGACAAACAAATGGCTAGAAAGAAGCAGAAAGGAATGGAGCAAGTGGAACTACCAACATCTTTGCAGCAGTTTTCTCGCAAGAAAGCGGCTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005732 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BING4CT WD40

Protein Analysis

106

Amino Acids

12.2

Weight (kDa)

10.1

Isoelectric Point (pI)

50.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10530
fragaria_vesca	FvH4_7g06900 FvH4_7g06900
malus_domestica	MD07G1075700.v1.1 MD13G1165600.v1.1
prunus_persica	Prupe.2G096600_v2.0.a1 Prupe.2G096600_v2.0.a1
pyrus_communis	pycom02g20600 pycom07g05980 pycom13g14170
rosa_chinensis	RchiOBHm_Chr1g0336741 RchiOBHm_Chr1g0336801 RchiOBHm_Chr1g0336811 RchiOBHm_Chr1g0336821
rosa_laevigata	RLG00000029332 RLG00000029335 RLG00000029337
rosa_multiflora	Rmu_sc0000907.1_g000012 Rmu_sc0000907.1_g000017 Rmu_sc0000907.1_g000032 Rmu_sc0000907.1_g000033 Rmu_sc0011778.1_g000010
rosa_roxburghii	Rroxscaffold_4G00315350
rosa_rugosa	Rorug01G0127500 Rorug01G0127800 Rorug01G0127900
rosa_samantha	Rh1AG148700 Rh1AG148900 Rh1BG116800 Rh1BG116900 Rh1CG140100 Rh1DG155500 Rh1DG156000 Rh1DG156100 Rh5AG191600
rosa_wichuraiana	Rw1G012000 Rw1G012010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	87, 311
AclWI	GGATC	1 cut(s)	2
AjuI	GAANNNNNNNTTGG	2 cut(s)	185, 217
AluBI	AGCT	2 cut(s)	74, 79
AluI	AGCT	2 cut(s)	74, 79
Alw26I	GTCTC	1 cut(s)	190
AlwI	GGATC	1 cut(s)	2
ApeKI	GCWGC	1 cut(s)	289
BbvI	GCAGC	1 cut(s)	301
BcgI	CGANNNNNNTGC	2 cut(s)	281, 315
BcoDI	GTCTC	1 cut(s)	190
BfaI	CTAG	1 cut(s)	240
BisI	GCNGC	3 cut(s)	87, 290, 312
BlpI	GCTNAGC	1 cut(s)	75
BlsI	GCNGC	3 cut(s)	88, 291, 313
Bpu1102I	GCTNAGC	1 cut(s)	75
BsaI	GGTCTC	1 cut(s)	190
BsaJI	CCNNGG	1 cut(s)	102
BseDI	CCNNGG	1 cut(s)	102
BseMII	CTCAG	1 cut(s)	66
BseRI	GAGGAG	2 cut(s)	77, 154
BseXI	GCAGC	1 cut(s)	301
BslFI	GGGAC	1 cut(s)	98
BsmAI	GTCTC	1 cut(s)	190
BsmFI	GGGAC	1 cut(s)	98
Bso31I	GGTCTC	1 cut(s)	190
Bsp143I	GATC	1 cut(s)	7
Bsp1720I	GCTNAGC	1 cut(s)	75
BspACI	CCGC	2 cut(s)	87, 311
BspCNI	CTCAG	1 cut(s)	67
BspPI	GGATC	1 cut(s)	2
BspTNI	GGTCTC	1 cut(s)	190
BssECI	CCNNGG	1 cut(s)	102
BssMI	GATC	1 cut(s)	7
BssT1I	CCWWGG	1 cut(s)	102
Bst4CI	ACNGT	1 cut(s)	28
BstDEI	CTNAG	1 cut(s)	75
BstKTI	GATC	1 cut(s)	10
BstMAI	GTCTC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	7
BstV1I	GCAGC	1 cut(s)	301
BtsIMutI	CAGTG	1 cut(s)	33
CspCI	CAANNNNNGTGG	1 cut(s)	36
CviAII	CATG	1 cut(s)	318
CviJI	RGCY	7 cut(s)	52, 74, 79, 86, 148, 239, 314
CviKI_1	RGCY	7 cut(s)	52, 74, 79, 86, 148, 239, 314
DdeI	CTNAG	1 cut(s)	75
DpnI	GATC	1 cut(s)	9
DpnII	GATC	1 cut(s)	7
Eco130I	CCWWGG	1 cut(s)	102
Eco31I	GGTCTC	1 cut(s)	190
EcoT14I	CCWWGG	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	102
FaeI	CATG	1 cut(s)	321
FaiI	YATR	1 cut(s)	319
FaqI	GGGAC	1 cut(s)	98
FatI	CATG	1 cut(s)	317
Fnu4HI	GCNGC	3 cut(s)	87, 290, 312
Fsp4HI	GCNGC	3 cut(s)	87, 290, 312
FspBI	CTAG	1 cut(s)	240
GluI	GCNGC	3 cut(s)	87, 290, 312
Hin1II	CATG	1 cut(s)	321
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
Hpy166II	GTNNAC	1 cut(s)	94
Hpy8I	GTNNAC	1 cut(s)	94
HpyAV	CCTTC	1 cut(s)	61
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	1 cut(s)	289
HpyF3I	CTNAG	1 cut(s)	75
HpySE526I	ACGT	1 cut(s)	96
Hsp92II	CATG	1 cut(s)	321
Kzo9I	GATC	1 cut(s)	7
LmnI	GCTCC	1 cut(s)	262
LpnPI	CCDG	2 cut(s)	65, 158
Lsp1109I	GCAGC	1 cut(s)	301
MaeI	CTAG	1 cut(s)	240
MaeII	ACGT	1 cut(s)	96
MalI	GATC	1 cut(s)	9
MboI	GATC	1 cut(s)	7
MboII	GAAGA	5 cut(s)	133, 136, 172, 175, 178
MluCI	AATT	1 cut(s)	180
MnlI	CCTC	4 cut(s)	45, 55, 132, 217
MspA1I	CMGCKG	1 cut(s)	89
NdeII	GATC	1 cut(s)	7
NlaIII	CATG	1 cut(s)	321
PflFI	GACNNNGTC	1 cut(s)	110
PkrI	GCNGC	3 cut(s)	88, 291, 313
PsyI	GACNNNGTC	1 cut(s)	110
SatI	GCNGC	3 cut(s)	87, 290, 312
Sau3AI	GATC	1 cut(s)	7
SetI	ASST	5 cut(s)	37, 76, 81, 99, 202
Sse9I	AATT	1 cut(s)	180
SsiI	CCGC	2 cut(s)	87, 311
SspMI	CTAG	1 cut(s)	240
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	28
TaiI	ACGT	1 cut(s)	99
TasI	AATT	1 cut(s)	180
TauI	GCSGC	2 cut(s)	89, 314
TscAI	CASTG	1 cut(s)	33
TseI	GCWGC	1 cut(s)	289
TspDTI	ATGAA	2 cut(s)	173, 233
TspRI	CASTG	1 cut(s)	33
Tth111I	GACNNNGTC	1 cut(s)	110
XspI	CTAG	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.