U3 small nucleolar RNA-associated protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G10530 |
| fragaria_vesca | FvH4_7g06900 FvH4_7g06900 |
| malus_domestica | MD07G1075700.v1.1 MD13G1165600.v1.1 |
| prunus_persica | Prupe.2G096600_v2.0.a1 Prupe.2G096600_v2.0.a1 |
| pyrus_communis | pycom02g20600 pycom07g05980 pycom13g14170 |
| rosa_chinensis | RchiOBHm_Chr1g0336741 RchiOBHm_Chr1g0336801 RchiOBHm_Chr1g0336811 RchiOBHm_Chr1g0336821 |
| rosa_laevigata | RLG00000029332 RLG00000029335 RLG00000029337 |
| rosa_multiflora | Rmu_sc0000907.1_g000012 Rmu_sc0000907.1_g000017 Rmu_sc0000907.1_g000032 Rmu_sc0000907.1_g000033 Rmu_sc0011778.1_g000010 |
| rosa_roxburghii | Rroxscaffold_4G00315350 |
| rosa_rugosa | Rorug01G0127500 Rorug01G0127800 Rorug01G0127900 |
| rosa_samantha | Rh1AG148700 Rh1AG148900 Rh1BG116800 Rh1BG116900 Rh1CG140100 Rh1DG155500 Rh1DG156000 Rh1DG156100 Rh5AG191600 |
| rosa_wichuraiana | Rw1G012000 Rw1G012010 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 141 |
| Acc36I | ACCTGC | 1 cut(s) | 315 |
| AcoI | YGGCCR | 2 cut(s) | 91, 307 |
| AcyI | GRCGYC | 1 cut(s) | 227 |
| AfaI | GTAC | 1 cut(s) | 313 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 223 |
| AgsI | TTSAA | 1 cut(s) | 209 |
| AluBI | AGCT | 2 cut(s) | 188, 250 |
| AluI | AGCT | 2 cut(s) | 188, 250 |
| AoxI | GGCC | 2 cut(s) | 91, 307 |
| ApeKI | GCWGC | 1 cut(s) | 185 |
| AsuHPI | GGTGA | 1 cut(s) | 88 |
| BalI | TGGCCA | 1 cut(s) | 93 |
| BbvI | GCAGC | 1 cut(s) | 197 |
| BccI | CCATC | 2 cut(s) | 143, 266 |
| BceAI | ACGGC | 1 cut(s) | 294 |
| BfuAI | ACCTGC | 1 cut(s) | 315 |
| BisI | GCNGC | 1 cut(s) | 186 |
| BlsI | GCNGC | 1 cut(s) | 187 |
| BpmI | CTGGAG | 1 cut(s) | 19 |
| BsaAI | YACGTR | 1 cut(s) | 71 |
| BsaHI | GRCGYC | 1 cut(s) | 227 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 223 |
| BseGI | GGATG | 3 cut(s) | 154, 268, 285 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 223 |
| BseXI | GCAGC | 1 cut(s) | 197 |
| BsgI | GTGCAG | 1 cut(s) | 204 |
| BshFI | GGCC | 2 cut(s) | 93, 309 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 223 |
| BsnI | GGCC | 2 cut(s) | 93, 309 |
| Bsp143I | GATC | 1 cut(s) | 109 |
| BspANI | GGCC | 2 cut(s) | 93, 309 |
| BspMI | ACCTGC | 1 cut(s) | 315 |
| BssMI | GATC | 1 cut(s) | 109 |
| BssNI | GRCGYC | 1 cut(s) | 227 |
| BstACI | GRCGYC | 1 cut(s) | 227 |
| BstBAI | YACGTR | 1 cut(s) | 71 |
| BstDEI | CTNAG | 1 cut(s) | 100 |
| BstF5I | GGATG | 3 cut(s) | 154, 268, 285 |
| BstKTI | GATC | 1 cut(s) | 112 |
| BstMBI | GATC | 1 cut(s) | 109 |
| BstSNI | TACGTA | 1 cut(s) | 71 |
| BstV1I | GCAGC | 1 cut(s) | 197 |
| BsuRI | GGCC | 2 cut(s) | 93, 309 |
| BtsCI | GGATG | 3 cut(s) | 154, 268, 285 |
| BtsIMutI | CAGTG | 1 cut(s) | 153 |
| BveI | ACCTGC | 1 cut(s) | 315 |
| CseI | GACGC | 1 cut(s) | 216 |
| Csp6I | GTAC | 1 cut(s) | 312 |
| CviAII | CATG | 1 cut(s) | 179 |
| CviJI | RGCY | 6 cut(s) | 93, 188, 196, 250, 303, 309 |
| CviKI_1 | RGCY | 6 cut(s) | 93, 188, 196, 250, 303, 309 |
| CviQI | GTAC | 1 cut(s) | 312 |
| DdeI | CTNAG | 1 cut(s) | 100 |
| DpnI | GATC | 1 cut(s) | 111 |
| DpnII | GATC | 1 cut(s) | 109 |
| EaeI | YGGCCR | 2 cut(s) | 91, 307 |
| Eco105I | TACGTA | 1 cut(s) | 71 |
| FaeI | CATG | 1 cut(s) | 182 |
| FaiI | YATR | 6 cut(s) | 74, 133, 135, 141, 180, 243 |
| FatI | CATG | 1 cut(s) | 178 |
| Fnu4HI | GCNGC | 1 cut(s) | 186 |
| FokI | GGATG | 3 cut(s) | 161, 275, 292 |
| Fsp4HI | GCNGC | 1 cut(s) | 186 |
| GluI | GCNGC | 1 cut(s) | 186 |
| GsuI | CTGGAG | 1 cut(s) | 19 |
| HaeIII | GGCC | 2 cut(s) | 93, 309 |
| HgaI | GACGC | 1 cut(s) | 216 |
| Hin1I | GRCGYC | 1 cut(s) | 227 |
| Hin1II | CATG | 1 cut(s) | 182 |
| HincII | GTYRAC | 1 cut(s) | 10 |
| HindII | GTYRAC | 1 cut(s) | 10 |
| HpaI | GTTAAC | 1 cut(s) | 10 |
| HphI | GGTGA | 1 cut(s) | 88 |
| Hpy166II | GTNNAC | 2 cut(s) | 10, 68 |
| Hpy188I | TCNGA | 1 cut(s) | 279 |
| Hpy188III | TCNNGA | 4 cut(s) | 36, 146, 206, 260 |
| Hpy8I | GTNNAC | 2 cut(s) | 10, 68 |
| HpyCH4IV | ACGT | 1 cut(s) | 70 |
| HpyCH4V | TGCA | 2 cut(s) | 185, 324 |
| HpyF3I | CTNAG | 1 cut(s) | 100 |
| HpySE526I | ACGT | 1 cut(s) | 70 |
| Hsp92I | GRCGYC | 1 cut(s) | 227 |
| Hsp92II | CATG | 1 cut(s) | 182 |
| KspAI | GTTAAC | 1 cut(s) | 10 |
| Kzo9I | GATC | 1 cut(s) | 109 |
| LpnPI | CCDG | 7 cut(s) | 29, 49, 107, 245, 280, 285, 310 |
| Lsp1109I | GCAGC | 1 cut(s) | 197 |
| MaeII | ACGT | 1 cut(s) | 70 |
| MaeIII | GTNAC | 2 cut(s) | 265, 290 |
| MalI | GATC | 1 cut(s) | 111 |
| MboI | GATC | 1 cut(s) | 109 |
| MlsI | TGGCCA | 1 cut(s) | 93 |
| MluNI | TGGCCA | 1 cut(s) | 93 |
| MmeI | TCCRAC | 1 cut(s) | 257 |
| Mox20I | TGGCCA | 1 cut(s) | 93 |
| MscI | TGGCCA | 1 cut(s) | 93 |
| MseI | TTAA | 4 cut(s) | 9, 105, 170, 191 |
| Msp20I | TGGCCA | 1 cut(s) | 93 |
| NdeII | GATC | 1 cut(s) | 109 |
| NlaIII | CATG | 1 cut(s) | 182 |
| PkrI | GCNGC | 1 cut(s) | 187 |
| Ppu21I | YACGTR | 1 cut(s) | 71 |
| PsiI | TTATAA | 1 cut(s) | 141 |
| RsaI | GTAC | 1 cut(s) | 313 |
| RsaNI | GTAC | 1 cut(s) | 312 |
| SaqAI | TTAA | 4 cut(s) | 9, 105, 170, 191 |
| SatI | GCNGC | 1 cut(s) | 186 |
| Sau3AI | GATC | 1 cut(s) | 109 |
| SetI | ASST | 6 cut(s) | 18, 73, 190, 252, 289, 329 |
| SgeI | CNNG | 9 cut(s) | 28, 48, 106, 158, 191, 218, 272, 307, 312 |
| SnaBI | TACGTA | 1 cut(s) | 71 |
| SspI | AATATT | 1 cut(s) | 87 |
| TaiI | ACGT | 1 cut(s) | 73 |
| Tru1I | TTAA | 4 cut(s) | 9, 105, 170, 191 |
| Tru9I | TTAA | 4 cut(s) | 9, 105, 170, 191 |
| TscAI | CASTG | 1 cut(s) | 160 |
| TseI | GCWGC | 1 cut(s) | 185 |
| TspDTI | ATGAA | 2 cut(s) | 242, 252 |
| TspRI | CASTG | 1 cut(s) | 160 |