Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003161

Physical Location & Seq

Genomic Coordinates Forward (+)

28495186 .. 28495476

Gene Structure 291 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56475

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGTTTGGTCCCACAAAGATTGGCACAGTGAAACCGCCAAGAAAAGAGAAGCCAACAAAGGATGAGAAAGAGGCTGAGCTGGAAGCCGCTGTTGAAGTTGCCAAGGACATTGTCCCAAAGAATAAAACAAAGGGGAGGAGTAAGCCAAGTAAGAAGATGAAGAAGAAGCAGGAGATAATTGCCAATGCGAAGAGACCTTTCTTGGAACAACAAATGAAAGGGGACGAACAAATGGCTAGAAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005732 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BING4CT WD40

Protein Analysis

82

Amino Acids

9.33

Weight (kDa)

10.08

Isoelectric Point (pI)

44.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10530
fragaria_vesca	FvH4_7g06900 FvH4_7g06900
malus_domestica	MD07G1075700.v1.1 MD13G1165600.v1.1
prunus_persica	Prupe.2G096600_v2.0.a1 Prupe.2G096600_v2.0.a1
pyrus_communis	pycom02g20600 pycom07g05980 pycom13g14170
rosa_chinensis	RchiOBHm_Chr1g0336741 RchiOBHm_Chr1g0336801 RchiOBHm_Chr1g0336811 RchiOBHm_Chr1g0336821
rosa_laevigata	RLG00000029332 RLG00000029335 RLG00000029337
rosa_multiflora	Rmu_sc0000907.1_g000012 Rmu_sc0000907.1_g000017 Rmu_sc0000907.1_g000032 Rmu_sc0000907.1_g000033 Rmu_sc0011778.1_g000010
rosa_roxburghii	Rroxscaffold_4G00315350
rosa_rugosa	Rorug01G0127500 Rorug01G0127800 Rorug01G0127900
rosa_samantha	Rh1AG148700 Rh1AG148900 Rh1BG116800 Rh1BG116900 Rh1CG140100 Rh1DG155500 Rh1DG156000 Rh1DG156100 Rh5AG191600
rosa_wichuraiana	Rw1G012000 Rw1G012010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	35, 87
AgsI	TTSAA	1 cut(s)	95
AluBI	AGCT	1 cut(s)	79
AluI	AGCT	1 cut(s)	79
Alw26I	GTCTC	1 cut(s)	187
AspS9I	GGNCC	1 cut(s)	8
AvaII	GGWCC	1 cut(s)	8
BcoDI	GTCTC	1 cut(s)	187
BfaI	CTAG	1 cut(s)	237
BisI	GCNGC	1 cut(s)	87
BlpI	GCTNAGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	88
Bme18I	GGWCC	1 cut(s)	8
BmgT120I	GGNCC	1 cut(s)	8
BmiI	GGNNCC	1 cut(s)	10
Bpu1102I	GCTNAGC	1 cut(s)	75
BsaI	GGTCTC	1 cut(s)	187
BsaJI	CCNNGG	1 cut(s)	102
BseDI	CCNNGG	1 cut(s)	102
BseGI	GGATG	1 cut(s)	67
BseMII	CTCAG	1 cut(s)	66
BseRI	GAGGAG	1 cut(s)	151
BslFI	GGGAC	2 cut(s)	98, 236
BsmAI	GTCTC	1 cut(s)	187
BsmFI	GGGAC	2 cut(s)	98, 236
Bso31I	GGTCTC	1 cut(s)	187
Bsp1720I	GCTNAGC	1 cut(s)	75
BspACI	CCGC	2 cut(s)	35, 87
BspCNI	CTCAG	1 cut(s)	67
BspLI	GGNNCC	1 cut(s)	10
BspTNI	GGTCTC	1 cut(s)	187
BssECI	CCNNGG	1 cut(s)	102
BssT1I	CCWWGG	1 cut(s)	102
Bst4CI	ACNGT	1 cut(s)	28
Bst6I	CTCTTC	1 cut(s)	185
BstDEI	CTNAG	1 cut(s)	75
BstF5I	GGATG	1 cut(s)	67
BstMAI	GTCTC	1 cut(s)	187
BtsCI	GGATG	1 cut(s)	67
BtsIMutI	CAGTG	1 cut(s)	33
Cfr13I	GGNCC	1 cut(s)	8
CspCI	CAANNNNNGTGG	1 cut(s)	36
CviJI	RGCY	6 cut(s)	52, 74, 79, 86, 145, 236
CviKI_1	RGCY	6 cut(s)	52, 74, 79, 86, 145, 236
DdeI	CTNAG	1 cut(s)	75
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
Eco130I	CCWWGG	1 cut(s)	102
Eco31I	GGTCTC	1 cut(s)	187
Eco47I	GGWCC	1 cut(s)	8
EcoT14I	CCWWGG	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	102
FaqI	GGGAC	2 cut(s)	98, 236
Fnu4HI	GCNGC	1 cut(s)	87
FokI	GGATG	1 cut(s)	74
Fsp4HI	GCNGC	1 cut(s)	87
FspBI	CTAG	1 cut(s)	237
GluI	GCNGC	1 cut(s)	87
HpyCH4III	ACNGT	1 cut(s)	28
HpyF3I	CTNAG	1 cut(s)	75
LpnPI	CCDG	2 cut(s)	65, 155
MaeI	CTAG	1 cut(s)	237
MboII	GAAGA	4 cut(s)	166, 172, 175, 202
MluCI	AATT	1 cut(s)	177
MnlI	CCTC	2 cut(s)	64, 129
MspA1I	CMGCKG	1 cut(s)	89
NlaIV	GGNNCC	1 cut(s)	10
PflFI	GACNNNGTC	1 cut(s)	110
PkrI	GCNGC	1 cut(s)	88
PspN4I	GGNNCC	1 cut(s)	10
PspPI	GGNCC	1 cut(s)	8
PsyI	GACNNNGTC	1 cut(s)	110
SatI	GCNGC	1 cut(s)	87
Sau96I	GGNCC	1 cut(s)	8
SetI	ASST	2 cut(s)	81, 199
SgeI	CNNG	6 cut(s)	51, 92, 115, 159, 182, 214
SinI	GGWCC	1 cut(s)	8
Sse9I	AATT	1 cut(s)	177
SsiI	CCGC	2 cut(s)	35, 87
SspMI	CTAG	1 cut(s)	237
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	28
TasI	AATT	1 cut(s)	177
TauI	GCSGC	1 cut(s)	89
TscAI	CASTG	1 cut(s)	33
TspDTI	ATGAA	2 cut(s)	173, 230
TspRI	CASTG	1 cut(s)	33
Tth111I	GACNNNGTC	1 cut(s)	110
VpaK11BI	GGWCC	1 cut(s)	8
XspI	CTAG	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.