Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003161

Physical Location & Seq

Genomic Coordinates Reverse (-)

21826771 .. 21827434

Gene Structure 664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0127900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGATTCTGTGGGATACTTGGAGGAATAGGAATGCTAAAGTTTGGGAGGGTGATTTTAAGCAAGTCTCAGAGATTGTCCCAATGCCATTGGGTTGGTTGGAAGAATTTCAAGCAGCCCGCATTACTACCCGGTTGGGGTTGGCAGCTAGACTAGCACCGAAATGGTCGAAACCACCAGCTGGCTTTGTGAAGTTGAACGTTGATGCTGATTTTGATCAGACCTTGTGTCGTACGGGTTTAGACCCGCGTGCTTTGTTACATGAAGCTTTGGACGCTCGGGTACTCAAGGTAGCTAGGCAGGCCAATATTGTGGCCCATATTTTGGCTCAGGAGGCCAAGCTTGTTGATTTTCAGTTAGATTTTTTCTCAGGTATTCCTCTGTTTGTGGAGGTCACTTTAATCAATGATTGTAATGATGCTCAATCAATGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005732 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BING4CT WD40

Protein Analysis

144

Amino Acids

16.27

Weight (kDa)

5.65

Isoelectric Point (pI)

28.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10530
fragaria_vesca	FvH4_7g06900 FvH4_7g06900
malus_domestica	MD07G1075700.v1.1 MD13G1165600.v1.1
prunus_persica	Prupe.2G096600_v2.0.a1 Prupe.2G096600_v2.0.a1
pyrus_communis	pycom02g20600 pycom07g05980 pycom13g14170
rosa_chinensis	RchiOBHm_Chr1g0336741 RchiOBHm_Chr1g0336801 RchiOBHm_Chr1g0336811 RchiOBHm_Chr1g0336821
rosa_laevigata	RLG00000029332 RLG00000029335 RLG00000029337
rosa_multiflora	Rmu_sc0000907.1_g000012 Rmu_sc0000907.1_g000017 Rmu_sc0000907.1_g000032 Rmu_sc0000907.1_g000033 Rmu_sc0011778.1_g000010
rosa_roxburghii	Rroxscaffold_4G00315350
rosa_rugosa	Rorug01G0127500 Rorug01G0127800 Rorug01G0127900
rosa_samantha	Rh1AG148700 Rh1AG148900 Rh1BG116800 Rh1BG116900 Rh1CG140100 Rh1DG155500 Rh1DG156000 Rh1DG156100 Rh5AG191600
rosa_wichuraiana	Rw1G012000 Rw1G012010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	179, 322
AccII	CGCG	1 cut(s)	247
AciI	CCGC	2 cut(s)	118, 245
AclI	AACGTT	1 cut(s)	198
AcsI	RAATTY	1 cut(s)	104
AfaI	GTAC	2 cut(s)	232, 282
AfiI	CCNNNNNNNGG	3 cut(s)	135, 179, 322
AgsI	TTSAA	2 cut(s)	110, 196
AhdI	GACNNNNNGTC	1 cut(s)	225
AluBI	AGCT	5 cut(s)	146, 179, 266, 293, 340
AluI	AGCT	5 cut(s)	146, 179, 266, 293, 340
Alw26I	GTCTC	1 cut(s)	70
Ama87I	CYCGRG	1 cut(s)	276
AoxI	GGCC	3 cut(s)	300, 312, 333
ApeKI	GCWGC	2 cut(s)	113, 143
ApoI	RAATTY	1 cut(s)	104
Asp700I	GAANNNNTTC	1 cut(s)	105
AspS9I	GGNCC	1 cut(s)	313
AsuC2I	CCSGG	1 cut(s)	130
AsuHPI	GGTGA	1 cut(s)	62
AvaI	CYCGRG	1 cut(s)	276
BbvI	GCAGC	2 cut(s)	125, 155
BciVI	GTATCC	1 cut(s)	7
BclI	TGATCA	1 cut(s)	214
BcnI	CCSGG	1 cut(s)	130
BcoDI	GTCTC	1 cut(s)	70
BfaI	CTAG	3 cut(s)	147, 152, 294
BfuI	GTATCC	1 cut(s)	7
BisI	GCNGC	2 cut(s)	114, 144
BlsI	GCNGC	2 cut(s)	115, 145
Bme1390I	CCNGG	1 cut(s)	130
BmeRI	GACNNNNNGTC	1 cut(s)	225
BmeT110I	CYCGRG	1 cut(s)	276
BmgT120I	GGNCC	1 cut(s)	313
BmrFI	CCNGG	1 cut(s)	130
BmsI	GCATC	2 cut(s)	193, 406
Bpu10I	CCTNAGC	1 cut(s)	327
BpuEI	CTTGAG	1 cut(s)	269
BpuMI	CCSGG	1 cut(s)	130
BsaBI	GATNNNNATC	1 cut(s)	213
Bsc4I	CCNNNNNNNGG	3 cut(s)	135, 179, 322
Bse8I	GATNNNNATC	1 cut(s)	213
BseJI	GATNNNNATC	1 cut(s)	213
BseLI	CCNNNNNNNGG	3 cut(s)	135, 179, 322
BseMII	CTCAG	3 cut(s)	81, 341, 381
BseXI	GCAGC	2 cut(s)	125, 155
Bsh1236I	CGCG	1 cut(s)	247
BshFI	GGCC	3 cut(s)	302, 314, 335
BsiHKCI	CYCGRG	1 cut(s)	276
BsiSI	CCGG	1 cut(s)	130
BsiWI	CGTACG	1 cut(s)	230
BslFI	GGGAC	1 cut(s)	62
BslI	CCNNNNNNNGG	3 cut(s)	135, 179, 322
BsmAI	GTCTC	1 cut(s)	70
BsmFI	GGGAC	1 cut(s)	62
BsmI	GAATGC	1 cut(s)	37
BsnI	GGCC	3 cut(s)	302, 314, 335
BsoBI	CYCGRG	1 cut(s)	276
Bsp143I	GATC	1 cut(s)	214
BspACI	CCGC	2 cut(s)	118, 245
BspANI	GGCC	3 cut(s)	302, 314, 335
BspCNI	CTCAG	3 cut(s)	80, 340, 380
BspFNI	CGCG	1 cut(s)	247
BssMI	GATC	1 cut(s)	214
BstC8I	GCNNGC	4 cut(s)	118, 181, 249, 300
BstDEI	CTNAG	3 cut(s)	67, 327, 367
BstFNI	CGCG	1 cut(s)	247
BstKTI	GATC	1 cut(s)	217
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	1 cut(s)	214
BstMWI	GCNNNNNNNGC	4 cut(s)	152, 272, 299, 332
BstSCI	CCNGG	1 cut(s)	128
BstUI	CGCG	1 cut(s)	247
BstV1I	GCAGC	2 cut(s)	125, 155
BstXI	CCANNNNNNTGG	2 cut(s)	93, 310
BsuI	GTATCC	1 cut(s)	7
BsuRI	GGCC	3 cut(s)	302, 314, 335
Cac8I	GCNNGC	4 cut(s)	118, 181, 249, 300
Cfr13I	GGNCC	1 cut(s)	313
CseI	GACGC	1 cut(s)	281
Csp6I	GTAC	2 cut(s)	231, 281
CviAII	CATG	1 cut(s)	260
CviQI	GTAC	2 cut(s)	231, 281
DdeI	CTNAG	3 cut(s)	67, 327, 367
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
DriI	GACNNNNNGTC	1 cut(s)	225
Eam1105I	GACNNNNNGTC	1 cut(s)	225
Eco88I	CYCGRG	1 cut(s)	276
FaeI	CATG	1 cut(s)	263
FaiI	YATR	2 cut(s)	261, 318
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	1 cut(s)	259
FauI	CCCGC	2 cut(s)	125, 252
FbaI	TGATCA	1 cut(s)	214
Fnu4HI	GCNGC	2 cut(s)	114, 144
Fsp4HI	GCNGC	2 cut(s)	114, 144
FspBI	CTAG	3 cut(s)	147, 152, 294
GluI	GCNGC	2 cut(s)	114, 144
HaeIII	GGCC	3 cut(s)	302, 314, 335
HapII	CCGG	1 cut(s)	130
HgaI	GACGC	1 cut(s)	281
Hin1II	CATG	1 cut(s)	263
HindIII	AAGCTT	2 cut(s)	264, 338
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	130
HphI	GGTGA	1 cut(s)	62
Hpy188I	TCNGA	2 cut(s)	70, 219
Hpy188III	TCNNGA	1 cut(s)	329
HpyCH4IV	ACGT	1 cut(s)	198
HpyF10VI	GCNNNNNNNGC	4 cut(s)	152, 272, 299, 332
HpyF3I	CTNAG	3 cut(s)	67, 327, 367
HpySE526I	ACGT	1 cut(s)	198
Hsp92II	CATG	1 cut(s)	263
Ksp22I	TGATCA	1 cut(s)	214
Kzo9I	GATC	1 cut(s)	214
LpnPI	CCDG	6 cut(s)	143, 165, 189, 284, 314, 354
Lsp1109I	GCAGC	2 cut(s)	125, 155
LweI	GCATC	2 cut(s)	193, 406
MaeI	CTAG	3 cut(s)	147, 152, 294
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	2 cut(s)	255, 391
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MboII	GAAGA	1 cut(s)	113
MluCI	AATT	2 cut(s)	104, 430
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	5 cut(s)	15, 40, 325, 382, 387
MroXI	GAANNNNTTC	1 cut(s)	105
MseI	TTAA	2 cut(s)	57, 398
MslI	CAYNNNNRTG	1 cut(s)	160
MspA1I	CMGCKG	1 cut(s)	179
MspI	CCGG	1 cut(s)	130
MspR9I	CCNGG	1 cut(s)	130
Mva1269I	GAATGC	1 cut(s)	37
MvnI	CGCG	1 cut(s)	247
MwoI	GCNNNNNNNGC	4 cut(s)	152, 272, 299, 332
NciI	CCSGG	1 cut(s)	130
NdeII	GATC	1 cut(s)	214
NlaIII	CATG	1 cut(s)	263
NmuCI	GTSAC	1 cut(s)	391
PctI	GAATGC	1 cut(s)	37
PdmI	GAANNNNTTC	1 cut(s)	105
PfeI	GAWTC	1 cut(s)	4
Pfl23II	CGTACG	1 cut(s)	230
PflMI	CCANNNNNTGG	2 cut(s)	179, 322
PkrI	GCNGC	2 cut(s)	115, 145
Psp1406I	AACGTT	1 cut(s)	198
PspLI	CGTACG	1 cut(s)	230
PspPI	GGNCC	1 cut(s)	313
PvuII	CAGCTG	1 cut(s)	179
RsaI	GTAC	2 cut(s)	232, 282
RsaNI	GTAC	2 cut(s)	231, 281
RseI	CAYNNNNRTG	1 cut(s)	160
SaqAI	TTAA	2 cut(s)	57, 398
SatI	GCNGC	2 cut(s)	114, 144
Sau3AI	GATC	1 cut(s)	214
Sau96I	GGNCC	1 cut(s)	313
ScrFI	CCNGG	1 cut(s)	130
SfaNI	GCATC	2 cut(s)	193, 406
SmiMI	CAYNNNNRTG	1 cut(s)	160
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
Sse9I	AATT	2 cut(s)	104, 430
SsiI	CCGC	2 cut(s)	118, 245
SspI	AATATT	1 cut(s)	307
SspMI	CTAG	3 cut(s)	147, 152, 294
StyD4I	CCNGG	1 cut(s)	128
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	1 cut(s)	167
TasI	AATT	2 cut(s)	104, 430
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	2 cut(s)	57, 398
Tru9I	TTAA	2 cut(s)	57, 398
TseFI	GTSAC	1 cut(s)	391
TseI	GCWGC	2 cut(s)	113, 143
Tsp45I	GTSAC	1 cut(s)	391
TspDTI	ATGAA	1 cut(s)	276
Van91I	CCANNNNNTGG	2 cut(s)	179, 322
XapI	RAATTY	1 cut(s)	104
XmnI	GAANNNNTTC	1 cut(s)	105
XspI	CTAG	3 cut(s)	147, 152, 294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.