Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003521

Physical Location & Seq

Genomic Coordinates Forward (+)

22791986 .. 22795417

Gene Structure 3432 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G230200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGCTGTGGAAGCTGAGAAATCTGGGCCTGATGGGAAGCTGTGGAGTCTATTCAAAAATCCATTTGGGCAGTCGAGAAATGCCTCTTCCTCTTCTTCTTCTTCGTCGTCTTCGACCTTGTCTTCTATGCACAATGTTCATCAGCTGGGTCAGACTCATGAGTCTGTGGAGCGTGCGGCTCTTCATTCTGCCAGTACGGTGTCGTATGTGACCAAGTCTTTGCTTCCTGCTAGGAGGAGGCTCCGTCTTGATCCTGCTAATAAGCTCTTTTTTCCATATGAACCTGGTAAGCAGGTGAAGAGTGCCATTGGAATTAAAAACACAAGCAAGTCTCATGTAGCTTTCAAGTTCCAAACAACTGCACCAAAGAGTTGTTACATGCGTCCTCCAGGGGGAATACTTTCTCCGGGTGAAAGTCTTATTGCAACTGTCTTCAAGTTTGTGGAACCTCCGGAGACCAATGAAAAACTAGTAGACCAGAAGAGCAGGGTTAAGTTCAAGATCATGAGCTTGAAAGTGAAAGGAGATATGGACTACGTACCAGAACTGTTTGATGAGCAGAAGGACCAAGTTGTGGTTGAGCAGGTTTTGCGTGTTGTTTTCCTGGATCCTGAACGCCCTACCCTTGCGATGGAAAAACTTAAGCGGCAATTGGCTGAGGCTGAGGCTGCCCTCGAAGCACGAAAGAAGCCTCCAGAAGAAACAGGGCCCCGAATTGTAGGGGAAGGACTTGTCATAGATGAATGGAAAGAGCGCAGGGAAAGGTACCTAGCCCAGCAGCAGGTTGAAGGTGTTGATTCGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

269

Amino Acids

29.88

Weight (kDa)

9.25

Isoelectric Point (pI)

48.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003521)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54110 AT5G54110
fragaria_vesca	FvH4_3g21120 FvH4_6g44480 FvH4_6g44480
malus_domestica	MD03G1217600.v1.1 MD09G1096700.v1.1 MD11G1235400.v1.1 MD17G1085000.v1.1
prunus_persica	Prupe.3G230200_v2.0.a1 Prupe.4G191600_v2.0.a1
pyrus_communis	pycom03g16720 pycom09g02110 pycom11g20710 pycom17g08230
rosa_chinensis	RchiOBHm_Chr2g0161541 RchiOBHm_Chr5g0036131
rosa_laevigata	RLG00000021290 RLG00000033673
rosa_multiflora	Rmu_sc0000382.1_g000010 Rmu_sc0013623.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044610 Rroxscaffold_2G00088720
rosa_rugosa	Rorug02G0490400 Rorug05G0152700
rosa_samantha	Rh2AG556700 Rh2BG570000 Rh2CG540500 Rh2DG579400 Rh5AG247300 Rh5BG247700 Rh5CG278700 Rh5DG256100
rosa_wichuraiana	Rw2G046070 Rw5G022680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	283
AasI	GACNNNNNNGTC	1 cut(s)	160
Acc36I	ACCTGC	3 cut(s)	283, 574, 772
Acc65I	GGTACC	1 cut(s)	765
AccB1I	GGYRCC	1 cut(s)	765
AccB7I	CCANNNNNTGG	1 cut(s)	574
AccI	GTMKAC	1 cut(s)	474
AccIII	TCCGGA	1 cut(s)	451
AciI	CCGC	2 cut(s)	176, 646
AclWI	GGATC	3 cut(s)	245, 602, 615
AfaI	GTAC	3 cut(s)	196, 540, 767
AfiI	CCNNNNNNNGG	4 cut(s)	392, 574, 631, 781
AflII	CTTAAG	1 cut(s)	641
AgsI	TTSAA	6 cut(s)	55, 346, 436, 499, 514, 788
AhlI	ACTAGT	1 cut(s)	469
AjnI	CCWGG	3 cut(s)	283, 388, 603
AluBI	AGCT	6 cut(s)	14, 40, 145, 265, 341, 510
AluI	AGCT	6 cut(s)	14, 40, 145, 265, 341, 510
Alw26I	GTCTC	2 cut(s)	336, 449
AlwI	GGATC	3 cut(s)	245, 602, 615
Aor13HI	TCCGGA	1 cut(s)	451
AoxI	GGCC	2 cut(s)	26, 707
ApaI	GGGCCC	1 cut(s)	711
ApeKI	GCWGC	2 cut(s)	668, 778
ArsI	GACNNNNNNTTYG	2 cut(s)	202, 234
Asp700I	GAANNNNTTC	1 cut(s)	400
Asp718I	GGTACC	1 cut(s)	765
AspLEI	GCGC	1 cut(s)	756
AspS9I	GGNCC	4 cut(s)	26, 565, 707, 708
AsuC2I	CCSGG	1 cut(s)	408
AsuHPI	GGTGA	2 cut(s)	307, 422
AvaII	GGWCC	1 cut(s)	565
BaeGI	GKGCMC	1 cut(s)	711
BamHI	GGATCC	1 cut(s)	607
BanI	GGYRCC	1 cut(s)	765
BanII	GRGCYC	1 cut(s)	711
BbsI	GAAGAC	3 cut(s)	102, 114, 424
BbvCI	CCTCAGC	2 cut(s)	657, 663
BbvI	GCAGC	2 cut(s)	655, 790
BccI	CCATC	2 cut(s)	26, 625
BciT130I	CCWGG	3 cut(s)	285, 390, 605
BcnI	CCSGG	1 cut(s)	408
BcoDI	GTCTC	2 cut(s)	336, 449
BcuI	ACTAGT	1 cut(s)	469
BfaI	CTAG	3 cut(s)	231, 470, 770
BfrI	CTTAAG	1 cut(s)	641
BfuAI	ACCTGC	3 cut(s)	283, 574, 772
BisI	GCNGC	4 cut(s)	177, 647, 669, 779
BlsI	GCNGC	4 cut(s)	178, 648, 670, 780
Bme1390I	CCNGG	4 cut(s)	285, 390, 408, 605
Bme18I	GGWCC	1 cut(s)	565
BmgT120I	GGNCC	4 cut(s)	26, 565, 707, 708
BmiI	GGNNCC	6 cut(s)	242, 447, 609, 709, 710, 767
BmrFI	CCNGG	4 cut(s)	285, 390, 408, 605
BpiI	GAAGAC	3 cut(s)	102, 114, 424
BpmI	CTGGAG	2 cut(s)	372, 678
Bpu10I	CCTNAGC	2 cut(s)	657, 663
BpuMI	CCSGG	1 cut(s)	408
BsaAI	YACGTR	1 cut(s)	538
BsaI	GGTCTC	1 cut(s)	449
BsaJI	CCNNGG	1 cut(s)	389
BsaWI	WCCGGW	1 cut(s)	451
BsaXI	ACNNNNNCTCC	2 cut(s)	229, 259
Bsc4I	CCNNNNNNNGG	4 cut(s)	392, 574, 631, 781
Bse1I	ACTGG	1 cut(s)	192
BseAI	TCCGGA	1 cut(s)	451
BseBI	CCWGG	3 cut(s)	285, 390, 605
BseDI	CCNNGG	1 cut(s)	389
BseLI	CCNNNNNNNGG	4 cut(s)	392, 574, 631, 781
BseMII	CTCAG	3 cut(s)	6, 648, 654
BseNI	ACTGG	1 cut(s)	192
BseRI	GAGGAG	1 cut(s)	250
BseSI	GKGCMC	1 cut(s)	711
BseXI	GCAGC	2 cut(s)	655, 790
BseYI	CCCAGC	2 cut(s)	145, 774
BsgI	GTGCAG	1 cut(s)	345
BshFI	GGCC	2 cut(s)	28, 709
BshNI	GGYRCC	1 cut(s)	765
BsiSI	CCGG	2 cut(s)	407, 452
BslI	CCNNNNNNNGG	4 cut(s)	392, 574, 631, 781
BsmAI	GTCTC	2 cut(s)	336, 449
BsnI	GGCC	2 cut(s)	28, 709
Bso31I	GGTCTC	1 cut(s)	449
Bsp120I	GGGCCC	1 cut(s)	707
Bsp1286I	GDGCHC	1 cut(s)	711
Bsp13I	TCCGGA	1 cut(s)	451
Bsp143I	GATC	3 cut(s)	250, 501, 607
BspACI	CCGC	2 cut(s)	176, 646
BspANI	GGCC	2 cut(s)	28, 709
BspCNI	CTCAG	3 cut(s)	7, 649, 655
BspEI	TCCGGA	1 cut(s)	451
BspHI	TCATGA	2 cut(s)	157, 504
BspLI	GGNNCC	6 cut(s)	242, 447, 609, 709, 710, 767
BspMI	ACCTGC	3 cut(s)	283, 574, 772
BspPI	GGATC	3 cut(s)	245, 602, 615
BspQI	GCTCTTC	2 cut(s)	186, 476
BspT107I	GGYRCC	1 cut(s)	765
BspTI	CTTAAG	1 cut(s)	641
BspTNI	GGTCTC	1 cut(s)	449
BsrI	ACTGG	1 cut(s)	192
BssECI	CCNNGG	1 cut(s)	389
BssMI	GATC	3 cut(s)	250, 501, 607
Bst2UI	CCWGG	3 cut(s)	285, 390, 605
Bst4CI	ACNGT	3 cut(s)	199, 430, 549
Bst6I	CTCTTC	5 cut(s)	91, 97, 186, 293, 476
BstAFI	CTTAAG	1 cut(s)	641
BstAPI	GCANNNNNTGC	1 cut(s)	589
BstBAI	YACGTR	1 cut(s)	538
BstC8I	GCNNGC	1 cut(s)	174
BstDEI	CTNAG	3 cut(s)	15, 657, 663
BstHHI	GCGC	1 cut(s)	756
BstKTI	GATC	3 cut(s)	253, 504, 610
BstMAI	GTCTC	2 cut(s)	336, 449
BstMBI	GATC	3 cut(s)	250, 501, 607
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 589, 668, 677
BstNI	CCWGG	3 cut(s)	285, 390, 605
BstNSI	RCATGY	1 cut(s)	382
BstSCI	CCNGG	4 cut(s)	283, 388, 406, 603
BstSLI	GKGCMC	1 cut(s)	711
BstSNI	TACGTA	1 cut(s)	538
BstV1I	GCAGC	2 cut(s)	655, 790
BstV2I	GAAGAC	3 cut(s)	102, 114, 424
BstX2I	RGATCY	1 cut(s)	607
BstYI	RGATCY	1 cut(s)	607
BsuRI	GGCC	2 cut(s)	28, 709
BtgZI	GCGATG	1 cut(s)	644
BveI	ACCTGC	3 cut(s)	283, 574, 772
Cac8I	GCNNGC	1 cut(s)	174
CciI	TCATGA	2 cut(s)	157, 504
CfoI	GCGC	1 cut(s)	756
Cfr13I	GGNCC	4 cut(s)	26, 565, 707, 708
CseI	GACGC	1 cut(s)	371
CsiI	ACCWGGT	1 cut(s)	283
Csp6I	GTAC	3 cut(s)	195, 539, 766
CviAII	CATG	4 cut(s)	158, 335, 379, 505
CviQI	GTAC	3 cut(s)	195, 539, 766
DdeI	CTNAG	3 cut(s)	15, 657, 663
DpnI	GATC	3 cut(s)	252, 503, 609
DpnII	GATC	3 cut(s)	250, 501, 607
DrdI	GACNNNNNNGTC	1 cut(s)	160
DseDI	GACNNNNNNGTC	1 cut(s)	160
Eam1104I	CTCTTC	5 cut(s)	91, 97, 186, 293, 476
EarI	CTCTTC	5 cut(s)	91, 97, 186, 293, 476
Eco105I	TACGTA	1 cut(s)	538
Eco24I	GRGCYC	1 cut(s)	711
Eco31I	GGTCTC	1 cut(s)	449
Eco47I	GGWCC	1 cut(s)	565
EcoO109I	RGGNCCY	2 cut(s)	707, 708
EcoRII	CCWGG	3 cut(s)	283, 388, 603
EcoT38I	GRGCYC	1 cut(s)	711
FaeI	CATG	4 cut(s)	161, 338, 382, 508
FatI	CATG	4 cut(s)	157, 334, 378, 504
FauNDI	CATATG	1 cut(s)	277
FblI	GTMKAC	1 cut(s)	474
Fnu4HI	GCNGC	4 cut(s)	177, 647, 669, 779
FriOI	GRGCYC	1 cut(s)	711
Fsp4HI	GCNGC	4 cut(s)	177, 647, 669, 779
FspBI	CTAG	3 cut(s)	231, 470, 770
GlaI	GCGC	1 cut(s)	755
GluI	GCNGC	4 cut(s)	177, 647, 669, 779
GsaI	CCCAGC	2 cut(s)	149, 778
GsuI	CTGGAG	2 cut(s)	372, 678
HaeIII	GGCC	2 cut(s)	28, 709
HapII	CCGG	2 cut(s)	407, 452
HgaI	GACGC	1 cut(s)	371
HhaI	GCGC	1 cut(s)	756
Hin1II	CATG	4 cut(s)	161, 338, 382, 508
Hin6I	GCGC	1 cut(s)	754
HinP1I	GCGC	1 cut(s)	754
HinfI	GANTC	4 cut(s)	46, 154, 161, 797
HpaII	CCGG	2 cut(s)	407, 452
HphI	GGTGA	2 cut(s)	307, 422
Hpy166II	GTNNAC	1 cut(s)	475
Hpy188I	TCNGA	1 cut(s)	153
Hpy188III	TCNNGA	8 cut(s)	75, 158, 248, 452, 499, 505, 611, 695
Hpy8I	GTNNAC	1 cut(s)	475
Hpy99I	CGWCG	1 cut(s)	109
HpyAV	CCTTC	3 cut(s)	556, 719, 782
HpyCH4III	ACNGT	3 cut(s)	199, 430, 549
HpyCH4IV	ACGT	1 cut(s)	537
HpyCH4V	TGCA	3 cut(s)	130, 362, 425
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 589, 668, 677
HpyF3I	CTNAG	3 cut(s)	15, 657, 663
HpySE526I	ACGT	1 cut(s)	537
Hsp92II	CATG	4 cut(s)	161, 338, 382, 508
HspAI	GCGC	1 cut(s)	754
Kpn2I	TCCGGA	1 cut(s)	451
KpnI	GGTACC	1 cut(s)	769
Kzo9I	GATC	3 cut(s)	250, 501, 607
LguI	GCTCTTC	2 cut(s)	186, 476
LmnI	GCTCC	2 cut(s)	169, 246
Lsp1109I	GCAGC	2 cut(s)	655, 790
MabI	ACCWGGT	1 cut(s)	283
MaeI	CTAG	3 cut(s)	231, 470, 770
MaeII	ACGT	1 cut(s)	537
MaeIII	GTNAC	2 cut(s)	208, 374
MalI	GATC	3 cut(s)	252, 503, 609
MboI	GATC	3 cut(s)	250, 501, 607
MfeI	CAATTG	1 cut(s)	650
MflI	RGATCY	1 cut(s)	607
MhlI	GDGCHC	1 cut(s)	711
MluCI	AATT	3 cut(s)	312, 650, 714
MlyI	GAGTC	3 cut(s)	55, 148, 170
MroI	TCCGGA	1 cut(s)	451
MroXI	GAANNNNTTC	1 cut(s)	400
MseI	TTAA	3 cut(s)	315, 492, 642
MspA1I	CMGCKG	1 cut(s)	145
MspCI	CTTAAG	1 cut(s)	641
MspI	CCGG	2 cut(s)	407, 452
MspR9I	CCNGG	4 cut(s)	285, 390, 408, 605
MunI	CAATTG	1 cut(s)	650
MvaI	CCWGG	3 cut(s)	285, 390, 605
MwoI	GCNNNNNNNGC	4 cut(s)	11, 589, 668, 677
NciI	CCSGG	1 cut(s)	408
NdeI	CATATG	1 cut(s)	277
NdeII	GATC	3 cut(s)	250, 501, 607
NlaIII	CATG	4 cut(s)	161, 338, 382, 508
NlaIV	GGNNCC	6 cut(s)	242, 447, 609, 709, 710, 767
NmuCI	GTSAC	1 cut(s)	208
NspI	RCATGY	1 cut(s)	382
PagI	TCATGA	2 cut(s)	157, 504
PaqCI	CACCTGC	1 cut(s)	283
PciSI	GCTCTTC	2 cut(s)	186, 476
PcsI	WCGNNNNNNNCGW	1 cut(s)	110
PdmI	GAANNNNTTC	1 cut(s)	400
PfeI	GAWTC	1 cut(s)	797
PflFI	GACNNNGTC	2 cut(s)	118, 214
PflMI	CCANNNNNTGG	1 cut(s)	574
PfoI	TCCNGGA	1 cut(s)	603
PkrI	GCNGC	4 cut(s)	178, 648, 670, 780
PleI	GAGTC	3 cut(s)	54, 148, 169
PpsI	GAGTC	3 cut(s)	54, 148, 169
Ppu21I	YACGTR	1 cut(s)	538
Psp6I	CCWGG	3 cut(s)	283, 388, 603
PspFI	CCCAGC	2 cut(s)	145, 774
PspGI	CCWGG	3 cut(s)	283, 388, 603
PspN4I	GGNNCC	6 cut(s)	242, 447, 609, 709, 710, 767
PspOMI	GGGCCC	1 cut(s)	707
PspPI	GGNCC	4 cut(s)	26, 565, 707, 708
PsuI	RGATCY	1 cut(s)	607
PsyI	GACNNNGTC	2 cut(s)	118, 214
PvuII	CAGCTG	1 cut(s)	145
RsaI	GTAC	3 cut(s)	196, 540, 767
RsaNI	GTAC	3 cut(s)	195, 539, 766
SapI	GCTCTTC	2 cut(s)	186, 476
SaqAI	TTAA	3 cut(s)	315, 492, 642
SatI	GCNGC	4 cut(s)	177, 647, 669, 779
Sau3AI	GATC	3 cut(s)	250, 501, 607
Sau96I	GGNCC	4 cut(s)	26, 565, 707, 708
SchI	GAGTC	3 cut(s)	55, 148, 170
ScrFI	CCNGG	4 cut(s)	285, 390, 408, 605
SduI	GDGCHC	1 cut(s)	711
SexAI	ACCWGGT	1 cut(s)	283
SinI	GGWCC	1 cut(s)	565
SmlI	CTYRAG	1 cut(s)	641
SmoI	CTYRAG	1 cut(s)	641
SnaBI	TACGTA	1 cut(s)	538
SpeI	ACTAGT	1 cut(s)	469
Sse9I	AATT	3 cut(s)	312, 650, 714
SsiI	CCGC	2 cut(s)	176, 646
SspMI	CTAG	3 cut(s)	231, 470, 770
StyD4I	CCNGG	4 cut(s)	283, 388, 406, 603
TaaI	ACNGT	3 cut(s)	199, 430, 549
TaiI	ACGT	1 cut(s)	540
TaqI	TCGA	3 cut(s)	74, 113, 675
TasI	AATT	3 cut(s)	312, 650, 714
TauI	GCSGC	2 cut(s)	179, 649
TfiI	GAWTC	1 cut(s)	797
Tru1I	TTAA	3 cut(s)	315, 492, 642
Tru9I	TTAA	3 cut(s)	315, 492, 642
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	2 cut(s)	668, 778
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	5 cut(s)	128, 173, 294, 477, 756
TspGWI	ACGGA	1 cut(s)	233
Tth111I	GACNNNGTC	2 cut(s)	118, 214
Van91I	CCANNNNNTGG	1 cut(s)	574
Vha464I	CTTAAG	1 cut(s)	641
VpaK11BI	GGWCC	1 cut(s)	565
XceI	RCATGY	1 cut(s)	382
XmiI	GTMKAC	1 cut(s)	474
XmnI	GAANNNNTTC	1 cut(s)	400
XspI	CTAG	3 cut(s)	231, 470, 770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.