Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013623.1

Orthogroup ID

OG0003521

Physical Location & Seq

Genomic Coordinates Reverse (-)

3236 .. 5962

Gene Structure 2727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013623.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

atggctgtggaggctgagaagtttgggtccgacgggaagctttggagtctgtgcaaaaggccattttggcagtcaagaaatgctgctcctccttcttactcttcatcttcttcttcgtcttcgaatttgtcttctaggcataatgctcagcagcttagtcggattcacgagtctgtggagcgtccgacgctttattctgccagtacggtgtcgtatgtggccaagtctttgcttcccgctaggagaaggctccgtcttgatcctcctaataagctcttcttcccatatgaacctggaaagcaggttaagagtgctgttgggattaaaaacacttccaagtctcatgtagctttcaagttccaaacaactgcaccaaagagttgttacatgcgtcctcctgggggaatacttgctcctggtgaaagtcttgttgcaactgtattcaagttcgtggaacctccggagaacaatgaaaaaccagtagaccagaaaagcaaggttaagttcaagatcatgagcttaaaagtgaaaggagaaatggactatgttccagaattgtttgaggagcagaaggaacaagtcgttgttgagcaggttttacgtgttgttttccttgacccagaacgccctacccttgcaatggaaaaactcaagcggcaattggctgaggccgaggctgctcttgagtcacgaaagaagcctccagaagaagcagggccccgagttgtaggagaaggactggtcatagatgaatggaaagaacggagggaaagatacctagcacagcagcaagttgaaggagtagttgattcaatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

272

Amino Acids

30.62

Weight (kDa)

9.41

Isoelectric Point (pI)

56.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003521)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54110 AT5G54110
fragaria_vesca	FvH4_3g21120 FvH4_6g44480 FvH4_6g44480
malus_domestica	MD03G1217600.v1.1 MD09G1096700.v1.1 MD11G1235400.v1.1 MD17G1085000.v1.1
prunus_persica	Prupe.3G230200_v2.0.a1 Prupe.4G191600_v2.0.a1
pyrus_communis	pycom03g16720 pycom09g02110 pycom11g20710 pycom17g08230
rosa_chinensis	RchiOBHm_Chr2g0161541 RchiOBHm_Chr5g0036131
rosa_laevigata	RLG00000021290 RLG00000033673
rosa_multiflora	Rmu_sc0000382.1_g000010 Rmu_sc0013623.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044610 Rroxscaffold_2G00088720
rosa_rugosa	Rorug02G0490400 Rorug05G0152700
rosa_samantha	Rh2AG556700 Rh2BG570000 Rh2CG540500 Rh2DG579400 Rh5AG247300 Rh5BG247700 Rh5CG278700 Rh5DG256100
rosa_wichuraiana	Rw2G046070 Rw5G022680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	292, 583
AccI	GTMKAC	1 cut(s)	483
AccIII	TCCGGA	1 cut(s)	460
AciI	CCGC	2 cut(s)	237, 655
AclWI	GGATC	1 cut(s)	254
AcoI	YGGCCR	1 cut(s)	219
AcsI	RAATTY	1 cut(s)	124
AfaI	GTAC	1 cut(s)	205
AfiI	CCNNNNNNNGG	2 cut(s)	401, 640
AflIII	ACRYGT	1 cut(s)	601
AgsI	TTSAA	5 cut(s)	355, 445, 508, 797, 813
AjnI	CCWGG	3 cut(s)	292, 397, 415
AluBI	AGCT	5 cut(s)	40, 154, 274, 350, 519
AluI	AGCT	5 cut(s)	40, 154, 274, 350, 519
Alw26I	GTCTC	1 cut(s)	345
AlwI	GGATC	1 cut(s)	254
Ama87I	CYCGRG	1 cut(s)	720
Aor13HI	TCCGGA	1 cut(s)	460
AoxI	GGCC	4 cut(s)	59, 219, 669, 716
ApaI	GGGCCC	1 cut(s)	720
ApeKI	GCWGC	4 cut(s)	83, 151, 677, 787
ApoI	RAATTY	1 cut(s)	124
AspS9I	GGNCC	3 cut(s)	27, 716, 717
AsuHPI	GGTGA	1 cut(s)	431
AsuII	TTCGAA	1 cut(s)	122
AvaI	CYCGRG	1 cut(s)	720
AvaII	GGWCC	1 cut(s)	27
BaeGI	GKGCMC	1 cut(s)	720
BalI	TGGCCA	1 cut(s)	221
BanII	GRGCYC	1 cut(s)	720
BauI	CACGAG	1 cut(s)	167
BbsI	GAAGAC	2 cut(s)	111, 123
BbvCI	CCTCAGC	1 cut(s)	666
BbvI	GCAGC	4 cut(s)	70, 163, 664, 799
BcgI	CGANNNNNNTGC	2 cut(s)	140, 174
BciT130I	CCWGG	3 cut(s)	294, 399, 417
BcoDI	GTCTC	1 cut(s)	345
BfaI	CTAG	3 cut(s)	135, 240, 779
BfuAI	ACCTGC	2 cut(s)	292, 583
BglI	GCCNNNNNGGC	1 cut(s)	67
BisI	GCNGC	5 cut(s)	84, 152, 656, 678, 788
BlpI	GCTNAGC	1 cut(s)	147
BlsI	GCNGC	5 cut(s)	85, 153, 657, 679, 789
Bme1390I	CCNGG	3 cut(s)	294, 399, 417
Bme18I	GGWCC	1 cut(s)	27
BmeT110I	CYCGRG	1 cut(s)	720
BmgT120I	GGNCC	3 cut(s)	27, 716, 717
BmiI	GGNNCC	5 cut(s)	28, 251, 456, 718, 719
BmrFI	CCNGG	3 cut(s)	294, 399, 417
BpiI	GAAGAC	2 cut(s)	111, 123
BpmI	CTGGAG	1 cut(s)	687
Bpu10I	CCTNAGC	1 cut(s)	666
Bpu1102I	GCTNAGC	1 cut(s)	147
Bpu14I	TTCGAA	1 cut(s)	122
BpuEI	CTTGAG	2 cut(s)	635, 704
BsaAI	YACGTR	1 cut(s)	602
BsaJI	CCNNGG	2 cut(s)	398, 672
BsaWI	WCCGGW	1 cut(s)	460
Bsc4I	CCNNNNNNNGG	2 cut(s)	401, 640
Bse1I	ACTGG	3 cut(s)	201, 479, 744
Bse3DI	GCAATG	1 cut(s)	645
BseAI	TCCGGA	1 cut(s)	460
BseBI	CCWGG	3 cut(s)	294, 399, 417
BseDI	CCNNGG	2 cut(s)	398, 672
BseLI	CCNNNNNNNGG	2 cut(s)	401, 640
BseMI	GCAATG	1 cut(s)	645
BseMII	CTCAG	3 cut(s)	6, 161, 657
BseNI	ACTGG	3 cut(s)	201, 479, 744
BseRI	GAGGAG	2 cut(s)	78, 578
BseSI	GKGCMC	1 cut(s)	720
BseXI	GCAGC	4 cut(s)	70, 163, 664, 799
BsgI	GTGCAG	1 cut(s)	354
BshFI	GGCC	4 cut(s)	61, 221, 671, 718
BsiHKCI	CYCGRG	1 cut(s)	720
BsiSI	CCGG	1 cut(s)	461
BslI	CCNNNNNNNGG	2 cut(s)	401, 640
BsmAI	GTCTC	1 cut(s)	345
BsnI	GGCC	4 cut(s)	61, 221, 671, 718
BsoBI	CYCGRG	1 cut(s)	720
Bsp119I	TTCGAA	1 cut(s)	122
Bsp120I	GGGCCC	1 cut(s)	716
Bsp1286I	GDGCHC	1 cut(s)	720
Bsp13I	TCCGGA	1 cut(s)	460
Bsp143I	GATC	2 cut(s)	259, 510
Bsp1720I	GCTNAGC	1 cut(s)	147
BspACI	CCGC	2 cut(s)	237, 655
BspANI	GGCC	4 cut(s)	61, 221, 671, 718
BspCNI	CTCAG	3 cut(s)	7, 160, 658
BspEI	TCCGGA	1 cut(s)	460
BspHI	TCATGA	1 cut(s)	513
BspLI	GGNNCC	5 cut(s)	28, 251, 456, 718, 719
BspMI	ACCTGC	2 cut(s)	292, 583
BspPI	GGATC	1 cut(s)	254
BspQI	GCTCTTC	1 cut(s)	281
BspT104I	TTCGAA	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	645
BsrI	ACTGG	3 cut(s)	201, 479, 744
BssECI	CCNNGG	2 cut(s)	398, 672
BssMI	GATC	2 cut(s)	259, 510
BssSI	CACGAG	1 cut(s)	167
Bst2BI	CACGAG	1 cut(s)	167
Bst2UI	CCWGG	3 cut(s)	294, 399, 417
Bst4CI	ACNGT	2 cut(s)	208, 439
Bst6I	CTCTTC	2 cut(s)	106, 281
BstBAI	YACGTR	1 cut(s)	602
BstBI	TTCGAA	1 cut(s)	122
BstDEI	CTNAG	4 cut(s)	15, 147, 155, 666
BstKTI	GATC	2 cut(s)	262, 513
BstMAI	GTCTC	1 cut(s)	345
BstMBI	GATC	2 cut(s)	259, 510
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 67, 187, 677
BstNI	CCWGG	3 cut(s)	294, 399, 417
BstNSI	RCATGY	1 cut(s)	391
BstSCI	CCNGG	3 cut(s)	292, 397, 415
BstSLI	GKGCMC	1 cut(s)	720
BstV1I	GCAGC	4 cut(s)	70, 163, 664, 799
BstV2I	GAAGAC	2 cut(s)	111, 123
BsuRI	GGCC	4 cut(s)	61, 221, 671, 718
BveI	ACCTGC	2 cut(s)	292, 583
CciI	TCATGA	1 cut(s)	513
Cfr13I	GGNCC	3 cut(s)	27, 716, 717
CseI	GACGC	3 cut(s)	170, 196, 380
Csp6I	GTAC	1 cut(s)	204
CviAII	CATG	3 cut(s)	344, 388, 514
CviQI	GTAC	1 cut(s)	204
DdeI	CTNAG	4 cut(s)	15, 147, 155, 666
DpnI	GATC	2 cut(s)	261, 512
DpnII	GATC	2 cut(s)	259, 510
EaeI	YGGCCR	1 cut(s)	219
Eam1104I	CTCTTC	2 cut(s)	106, 281
EarI	CTCTTC	2 cut(s)	106, 281
Eco24I	GRGCYC	1 cut(s)	720
Eco47I	GGWCC	1 cut(s)	27
Eco88I	CYCGRG	1 cut(s)	720
EcoO109I	RGGNCCY	2 cut(s)	716, 717
EcoRII	CCWGG	3 cut(s)	292, 397, 415
EcoT38I	GRGCYC	1 cut(s)	720
FaeI	CATG	3 cut(s)	347, 391, 517
FaiI	YATR	9 cut(s)	141, 216, 286, 288, 345, 389, 515, 546, 746
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
FatI	CATG	3 cut(s)	343, 387, 513
FauI	CCCGC	1 cut(s)	244
FauNDI	CATATG	1 cut(s)	286
FblI	GTMKAC	1 cut(s)	483
Fnu4HI	GCNGC	5 cut(s)	84, 152, 656, 678, 788
FriOI	GRGCYC	1 cut(s)	720
Fsp4HI	GCNGC	5 cut(s)	84, 152, 656, 678, 788
FspBI	CTAG	3 cut(s)	135, 240, 779
GluI	GCNGC	5 cut(s)	84, 152, 656, 678, 788
GsuI	CTGGAG	1 cut(s)	687
HaeIII	GGCC	4 cut(s)	61, 221, 671, 718
HapII	CCGG	1 cut(s)	461
HgaI	GACGC	3 cut(s)	170, 196, 380
Hin1II	CATG	3 cut(s)	347, 391, 517
HindIII	AAGCTT	1 cut(s)	38
HinfI	GANTC	5 cut(s)	46, 163, 170, 686, 809
HpaII	CCGG	1 cut(s)	461
HphI	GGTGA	1 cut(s)	431
Hpy166II	GTNNAC	1 cut(s)	484
Hpy188I	TCNGA	3 cut(s)	31, 162, 186
Hpy8I	GTNNAC	1 cut(s)	484
Hpy99I	CGWCG	2 cut(s)	35, 190
HpyAV	CCTTC	5 cut(s)	102, 240, 565, 728, 791
HpyCH4III	ACNGT	2 cut(s)	208, 439
HpyCH4IV	ACGT	1 cut(s)	601
HpyCH4V	TGCA	4 cut(s)	54, 371, 434, 638
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 67, 187, 677
HpyF3I	CTNAG	4 cut(s)	15, 147, 155, 666
HpySE526I	ACGT	1 cut(s)	601
Hsp92II	CATG	3 cut(s)	347, 391, 517
Kpn2I	TCCGGA	1 cut(s)	460
Kzo9I	GATC	2 cut(s)	259, 510
LguI	GCTCTTC	1 cut(s)	281
LmnI	GCTCC	5 cut(s)	91, 178, 255, 418, 565
Lsp1109I	GCAGC	4 cut(s)	70, 163, 664, 799
MaeI	CTAG	3 cut(s)	135, 240, 779
MaeII	ACGT	1 cut(s)	601
MaeIII	GTNAC	2 cut(s)	383, 687
MalI	GATC	2 cut(s)	261, 512
MboI	GATC	2 cut(s)	259, 510
MboII	GAAGA	9 cut(s)	93, 99, 102, 105, 111, 123, 268, 271, 719
MfeI	CAATTG	1 cut(s)	659
MhlI	GDGCHC	1 cut(s)	720
MlsI	TGGCCA	1 cut(s)	221
MluCI	AATT	3 cut(s)	124, 554, 659
MluNI	TGGCCA	1 cut(s)	221
MlyI	GAGTC	3 cut(s)	55, 179, 695
MmeI	TCCRAC	3 cut(s)	54, 140, 209
Mox20I	TGGCCA	1 cut(s)	221
MroI	TCCGGA	1 cut(s)	460
MscI	TGGCCA	1 cut(s)	221
MseI	TTAA	4 cut(s)	306, 324, 501, 521
Msp20I	TGGCCA	1 cut(s)	221
MspI	CCGG	1 cut(s)	461
MspR9I	CCNGG	3 cut(s)	294, 399, 417
MunI	CAATTG	1 cut(s)	659
MvaI	CCWGG	3 cut(s)	294, 399, 417
MwoI	GCNNNNNNNGC	4 cut(s)	11, 67, 187, 677
NdeI	CATATG	1 cut(s)	286
NdeII	GATC	2 cut(s)	259, 510
NlaIII	CATG	3 cut(s)	347, 391, 517
NlaIV	GGNNCC	5 cut(s)	28, 251, 456, 718, 719
NmeAIII	GCCGAG	1 cut(s)	697
NmuCI	GTSAC	1 cut(s)	687
NspI	RCATGY	1 cut(s)	391
NspV	TTCGAA	1 cut(s)	122
PagI	TCATGA	1 cut(s)	513
PciSI	GCTCTTC	1 cut(s)	281
PfeI	GAWTC	2 cut(s)	163, 809
PkrI	GCNGC	5 cut(s)	85, 153, 657, 679, 789
PleI	GAGTC	3 cut(s)	54, 178, 694
PpsI	GAGTC	3 cut(s)	54, 178, 694
Ppu21I	YACGTR	1 cut(s)	602
Psp6I	CCWGG	3 cut(s)	292, 397, 415
PspGI	CCWGG	3 cut(s)	292, 397, 415
PspN4I	GGNNCC	5 cut(s)	28, 251, 456, 718, 719
PspOMI	GGGCCC	1 cut(s)	716
PspPI	GGNCC	3 cut(s)	27, 716, 717
RsaI	GTAC	1 cut(s)	205
RsaNI	GTAC	1 cut(s)	204
SapI	GCTCTTC	1 cut(s)	281
SaqAI	TTAA	4 cut(s)	306, 324, 501, 521
SatI	GCNGC	5 cut(s)	84, 152, 656, 678, 788
Sau3AI	GATC	2 cut(s)	259, 510
Sau96I	GGNCC	3 cut(s)	27, 716, 717
SchI	GAGTC	3 cut(s)	55, 179, 695
ScrFI	CCNGG	3 cut(s)	294, 399, 417
SduI	GDGCHC	1 cut(s)	720
SfuI	TTCGAA	1 cut(s)	122
SinI	GGWCC	1 cut(s)	27
SmlI	CTYRAG	2 cut(s)	650, 683
SmoI	CTYRAG	2 cut(s)	650, 683
Sse9I	AATT	3 cut(s)	124, 554, 659
SsiI	CCGC	2 cut(s)	237, 655
SspMI	CTAG	3 cut(s)	135, 240, 779
StyD4I	CCNGG	3 cut(s)	292, 397, 415
TaaI	ACNGT	2 cut(s)	208, 439
TaiI	ACGT	1 cut(s)	604
TaqI	TCGA	1 cut(s)	122
TasI	AATT	3 cut(s)	124, 554, 659
TauI	GCSGC	1 cut(s)	658
TfiI	GAWTC	2 cut(s)	163, 809
Tru1I	TTAA	4 cut(s)	306, 324, 501, 521
Tru9I	TTAA	4 cut(s)	306, 324, 501, 521
TseFI	GTSAC	1 cut(s)	687
TseI	GCWGC	4 cut(s)	83, 151, 677, 787
Tsp45I	GTSAC	1 cut(s)	687
TspDTI	ATGAA	4 cut(s)	93, 303, 486, 765
TspGWI	ACGGA	2 cut(s)	242, 778
VpaK11BI	GGWCC	1 cut(s)	27
XapI	RAATTY	1 cut(s)	124
XceI	RCATGY	1 cut(s)	391
XmiI	GTMKAC	1 cut(s)	483
XspI	CTAG	3 cut(s)	135, 240, 779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.